HEADER TRANSFERASE 01-AUG-10 3O7W TITLE THE CRYSTAL STRUCTURE OF HUMAN LEUCINE CARBOXYL METHYLTRANSFERASE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE CARBOXYL METHYLTRANSFERASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 23-334 WITH DELETION OF RESIDUES 233-258; COMPND 5 SYNONYM: PROTEIN-LEUCINE O-METHYLTRANSFERASE; COMPND 6 EC: 2.1.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LCMT1, LCMT, CGI-68; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MODIFIED ROSSMANN FOLD, TRANSFERASE, PP2A EXPDTA X-RAY DIFFRACTION AUTHOR M.L.TSAI,N.CRONIN,S.DJORDJEVIC REVDAT 3 20-MAR-24 3O7W 1 REMARK SEQADV REVDAT 2 13-JUL-11 3O7W 1 JRNL SEQADV REVDAT 1 08-SEP-10 3O7W 0 SPRSDE 08-SEP-10 3O7W 3MNT JRNL AUTH M.L.TSAI,N.CRONIN,S.DJORDJEVIC JRNL TITL THE STRUCTURE OF HUMAN LEUCINE CARBOXYL METHYLTRANSFERASE 1 JRNL TITL 2 THAT REGULATES PROTEIN PHOSPHATASE PP2A JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 67 14 2011 JRNL REFN ISSN 0907-4449 JRNL PMID 21206058 JRNL DOI 10.1107/S0907444910042204 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 16072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 862 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1117 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.4650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2281 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.46000 REMARK 3 B33 (A**2) : 0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.179 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2361 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3187 ; 1.587 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 281 ; 6.423 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;35.920 ;24.128 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 439 ;17.249 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.745 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 351 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1748 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1413 ; 0.925 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2277 ; 1.590 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 948 ; 2.927 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 910 ; 4.350 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 33 REMARK 3 ORIGIN FOR THE GROUP (A): 31.7740 -7.4490 8.0240 REMARK 3 T TENSOR REMARK 3 T11: 0.2568 T22: 0.1851 REMARK 3 T33: 0.2967 T12: 0.0285 REMARK 3 T13: 0.1538 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 19.5302 L22: 8.9752 REMARK 3 L33: 15.9073 L12: 2.4340 REMARK 3 L13: 13.7584 L23: -4.7205 REMARK 3 S TENSOR REMARK 3 S11: -0.2650 S12: 0.6321 S13: -0.2423 REMARK 3 S21: -0.8685 S22: -0.2235 S23: -1.1460 REMARK 3 S31: -0.2174 S32: 0.5229 S33: 0.4885 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 59 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2220 -9.3450 10.9050 REMARK 3 T TENSOR REMARK 3 T11: 0.1182 T22: 0.1963 REMARK 3 T33: 0.1837 T12: 0.0379 REMARK 3 T13: 0.0411 T23: 0.0681 REMARK 3 L TENSOR REMARK 3 L11: 0.3023 L22: 3.1226 REMARK 3 L33: 2.6142 L12: 0.1482 REMARK 3 L13: -0.9425 L23: 0.9495 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: -0.0170 S13: -0.0292 REMARK 3 S21: 0.1722 S22: 0.0571 S23: 0.0851 REMARK 3 S31: 0.0869 S32: -0.0036 S33: -0.0245 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8740 3.4250 5.6000 REMARK 3 T TENSOR REMARK 3 T11: 0.1384 T22: 0.2356 REMARK 3 T33: 0.1049 T12: -0.0087 REMARK 3 T13: 0.0102 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.0876 L22: 2.2164 REMARK 3 L33: 4.8592 L12: -0.9219 REMARK 3 L13: 1.4417 L23: -0.9137 REMARK 3 S TENSOR REMARK 3 S11: -0.0955 S12: -0.2150 S13: -0.1175 REMARK 3 S21: 0.1962 S22: 0.0951 S23: 0.0218 REMARK 3 S31: -0.2093 S32: -0.3801 S33: 0.0003 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6550 -6.3450 -6.1300 REMARK 3 T TENSOR REMARK 3 T11: 0.0988 T22: 0.1774 REMARK 3 T33: 0.1101 T12: -0.0080 REMARK 3 T13: -0.0037 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.2494 L22: 2.2331 REMARK 3 L33: 1.0025 L12: -0.1589 REMARK 3 L13: -0.2453 L23: 0.5295 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: 0.0569 S13: -0.1441 REMARK 3 S21: 0.0354 S22: -0.0388 S23: 0.2320 REMARK 3 S31: 0.0283 S32: -0.1089 S33: 0.0527 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 130 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1060 -18.8720 -2.2430 REMARK 3 T TENSOR REMARK 3 T11: 0.1502 T22: 0.1868 REMARK 3 T33: 0.2004 T12: -0.0407 REMARK 3 T13: 0.0241 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 4.2014 L22: 4.1156 REMARK 3 L33: 3.1578 L12: 1.0707 REMARK 3 L13: 0.6357 L23: -3.3414 REMARK 3 S TENSOR REMARK 3 S11: 0.0649 S12: 0.0421 S13: -0.3108 REMARK 3 S21: -0.0200 S22: -0.1533 S23: -0.1665 REMARK 3 S31: 0.1020 S32: 0.0701 S33: 0.0884 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8270 -16.7120 -12.3810 REMARK 3 T TENSOR REMARK 3 T11: 0.0683 T22: 0.1649 REMARK 3 T33: 0.1224 T12: -0.0221 REMARK 3 T13: -0.0327 T23: 0.0438 REMARK 3 L TENSOR REMARK 3 L11: 11.5469 L22: 11.4101 REMARK 3 L33: 5.2728 L12: 5.0903 REMARK 3 L13: 5.0215 L23: -3.4687 REMARK 3 S TENSOR REMARK 3 S11: 0.2771 S12: -0.4812 S13: 0.1427 REMARK 3 S21: -0.0736 S22: -0.3049 S23: 0.2077 REMARK 3 S31: 0.2217 S32: -0.1054 S33: 0.0278 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 152 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): 20.2110 -20.3520 -12.8460 REMARK 3 T TENSOR REMARK 3 T11: 0.2928 T22: 0.4688 REMARK 3 T33: 0.5437 T12: 0.0851 REMARK 3 T13: -0.1404 T23: -0.1296 REMARK 3 L TENSOR REMARK 3 L11: 53.7321 L22: 21.5014 REMARK 3 L33: 0.6954 L12: 28.2467 REMARK 3 L13: 5.9021 L23: 7.1178 REMARK 3 S TENSOR REMARK 3 S11: -1.1393 S12: 1.3655 S13: -3.4438 REMARK 3 S21: -0.3632 S22: 1.6502 S23: -1.8683 REMARK 3 S31: 0.0769 S32: 0.5956 S33: -0.5110 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 159 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5060 -10.2770 -12.2970 REMARK 3 T TENSOR REMARK 3 T11: 0.1439 T22: 0.1822 REMARK 3 T33: 0.1510 T12: -0.0038 REMARK 3 T13: -0.0308 T23: -0.0310 REMARK 3 L TENSOR REMARK 3 L11: 2.5043 L22: 1.3165 REMARK 3 L33: 0.8527 L12: 0.5481 REMARK 3 L13: 0.5187 L23: -0.8642 REMARK 3 S TENSOR REMARK 3 S11: 0.0765 S12: -0.0152 S13: -0.4125 REMARK 3 S21: -0.1117 S22: 0.0311 S23: -0.0339 REMARK 3 S31: 0.0566 S32: -0.0059 S33: -0.1075 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): 27.5790 0.1710 -13.5410 REMARK 3 T TENSOR REMARK 3 T11: 0.1246 T22: 0.1794 REMARK 3 T33: 0.0652 T12: -0.0049 REMARK 3 T13: 0.0057 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.1694 L22: 1.4899 REMARK 3 L33: 1.3341 L12: 0.1705 REMARK 3 L13: 0.5638 L23: 0.5335 REMARK 3 S TENSOR REMARK 3 S11: -0.0037 S12: 0.1312 S13: -0.0962 REMARK 3 S21: -0.1199 S22: -0.0048 S23: -0.0509 REMARK 3 S31: -0.0152 S32: 0.0481 S33: 0.0085 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 228 A 234 REMARK 3 ORIGIN FOR THE GROUP (A): 36.7390 10.4240 -1.3310 REMARK 3 T TENSOR REMARK 3 T11: 0.1303 T22: 0.2257 REMARK 3 T33: 0.2017 T12: 0.0364 REMARK 3 T13: -0.0344 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 2.5072 L22: 0.9756 REMARK 3 L33: 9.1692 L12: 1.9607 REMARK 3 L13: -2.0050 L23: -0.9832 REMARK 3 S TENSOR REMARK 3 S11: -0.0849 S12: -0.1657 S13: -0.4434 REMARK 3 S21: -0.0492 S22: -0.0599 S23: -0.3521 REMARK 3 S31: 0.1926 S32: 0.7233 S33: 0.1448 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 259 A 261 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7380 12.6000 -1.9620 REMARK 3 T TENSOR REMARK 3 T11: 0.1726 T22: 0.1656 REMARK 3 T33: 0.0433 T12: 0.0015 REMARK 3 T13: -0.0136 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.9252 L22: 0.7945 REMARK 3 L33: 2.5392 L12: 1.1204 REMARK 3 L13: -1.4493 L23: -1.1581 REMARK 3 S TENSOR REMARK 3 S11: 0.0520 S12: -0.0644 S13: 0.0584 REMARK 3 S21: 0.0920 S22: -0.0406 S23: 0.0110 REMARK 3 S31: -0.4383 S32: 0.1200 S33: -0.0114 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 262 A 275 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1970 7.8160 15.5740 REMARK 3 T TENSOR REMARK 3 T11: 0.1518 T22: 0.1627 REMARK 3 T33: 0.0817 T12: 0.0117 REMARK 3 T13: 0.0629 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 2.4752 L22: 8.5303 REMARK 3 L33: 6.5464 L12: -1.5557 REMARK 3 L13: 1.0109 L23: -4.6164 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: -0.2738 S13: 0.1568 REMARK 3 S21: 0.3993 S22: -0.0473 S23: 0.2012 REMARK 3 S31: -0.3464 S32: 0.1729 S33: 0.0291 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 276 A 281 REMARK 3 ORIGIN FOR THE GROUP (A): 27.5550 6.1960 25.4240 REMARK 3 T TENSOR REMARK 3 T11: 0.8199 T22: 0.9596 REMARK 3 T33: 0.7836 T12: 0.1342 REMARK 3 T13: -0.0816 T23: -0.1926 REMARK 3 L TENSOR REMARK 3 L11: 90.2818 L22: 18.8681 REMARK 3 L33: -6.2387 L12: 50.5727 REMARK 3 L13: 4.6849 L23: 1.4715 REMARK 3 S TENSOR REMARK 3 S11: -0.1313 S12: -0.3775 S13: 0.3068 REMARK 3 S21: 0.4926 S22: -0.0654 S23: -0.1368 REMARK 3 S31: -0.1380 S32: -0.1708 S33: 0.1966 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 282 A 298 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3620 9.2090 5.0190 REMARK 3 T TENSOR REMARK 3 T11: 0.1385 T22: 0.1516 REMARK 3 T33: 0.0461 T12: -0.0420 REMARK 3 T13: -0.0419 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.8011 L22: 1.7589 REMARK 3 L33: 19.6286 L12: -1.4517 REMARK 3 L13: 4.1336 L23: -3.6690 REMARK 3 S TENSOR REMARK 3 S11: 0.2503 S12: -0.2182 S13: -0.1243 REMARK 3 S21: 0.1802 S22: 0.1713 S23: -0.0118 REMARK 3 S31: -0.1149 S32: 0.4964 S33: -0.4216 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 299 A 309 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0170 15.1150 -9.5270 REMARK 3 T TENSOR REMARK 3 T11: 0.1735 T22: 0.1010 REMARK 3 T33: 0.1305 T12: 0.0228 REMARK 3 T13: 0.0483 T23: -0.0754 REMARK 3 L TENSOR REMARK 3 L11: 11.6236 L22: 6.8375 REMARK 3 L33: 27.9938 L12: -2.9183 REMARK 3 L13: 12.6949 L23: -5.3381 REMARK 3 S TENSOR REMARK 3 S11: -0.3288 S12: -0.2701 S13: 0.6749 REMARK 3 S21: -0.0627 S22: 0.0394 S23: 0.0125 REMARK 3 S31: -1.5723 S32: -0.2875 S33: 0.2894 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3O7W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060776. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : VARIMAX VHF REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17062 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 17.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M AMMONIUM SULFATE, 0.05M BIS REMARK 280 TRIS (PH6.5), 30% PENTAERYTHRITOL ETHOXYLATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.54300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.88500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.64800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.88500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.54300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.64800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 17 REMARK 465 ALA A 18 REMARK 465 MET A 19 REMARK 465 ASP A 20 REMARK 465 GLU A 21 REMARK 465 ASN A 22 REMARK 465 ASP A 23 REMARK 465 GLU A 24 REMARK 465 GLY A 25 REMARK 465 VAL A 26 REMARK 465 ARG A 27 REMARK 465 GLY A 28 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 301 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 48 89.30 -152.42 REMARK 500 MET A 101 39.20 -88.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1 DBREF 3O7W A 23 334 UNP Q9UIC8 LCMT1_HUMAN 23 334 SEQADV 3O7W GLY A 17 UNP Q9UIC8 EXPRESSION TAG SEQADV 3O7W ALA A 18 UNP Q9UIC8 EXPRESSION TAG SEQADV 3O7W MET A 19 UNP Q9UIC8 EXPRESSION TAG SEQADV 3O7W ASP A 20 UNP Q9UIC8 EXPRESSION TAG SEQADV 3O7W GLU A 21 UNP Q9UIC8 EXPRESSION TAG SEQADV 3O7W ASN A 22 UNP Q9UIC8 EXPRESSION TAG SEQADV 3O7W GLU A 233 UNP Q9UIC8 LINKER SEQADV 3O7W GLY A 234 UNP Q9UIC8 LINKER SEQADV 3O7W A UNP Q9UIC8 MET 233 DELETION SEQADV 3O7W A UNP Q9UIC8 GLY 234 DELETION SEQADV 3O7W A UNP Q9UIC8 ASP 235 DELETION SEQADV 3O7W A UNP Q9UIC8 ARG 236 DELETION SEQADV 3O7W A UNP Q9UIC8 PHE 237 DELETION SEQADV 3O7W A UNP Q9UIC8 GLY 238 DELETION SEQADV 3O7W A UNP Q9UIC8 GLN 239 DELETION SEQADV 3O7W A UNP Q9UIC8 ILE 240 DELETION SEQADV 3O7W A UNP Q9UIC8 MET 241 DELETION SEQADV 3O7W A UNP Q9UIC8 ILE 242 DELETION SEQADV 3O7W A UNP Q9UIC8 ASN 244 DELETION SEQADV 3O7W A UNP Q9UIC8 LEU 245 DELETION SEQADV 3O7W A UNP Q9UIC8 ARG 246 DELETION SEQADV 3O7W A UNP Q9UIC8 ARG 247 DELETION SEQADV 3O7W A UNP Q9UIC8 ARG 248 DELETION SEQADV 3O7W A UNP Q9UIC8 GLN 249 DELETION SEQADV 3O7W A UNP Q9UIC8 CYS 250 DELETION SEQADV 3O7W A UNP Q9UIC8 ASP 251 DELETION SEQADV 3O7W A UNP Q9UIC8 LEU 252 DELETION SEQADV 3O7W A UNP Q9UIC8 ALA 253 DELETION SEQADV 3O7W A UNP Q9UIC8 VAL 255 DELETION SEQADV 3O7W A UNP Q9UIC8 GLU 256 DELETION SEQADV 3O7W A UNP Q9UIC8 THR 257 DELETION SEQADV 3O7W A UNP Q9UIC8 CYS 258 DELETION SEQRES 1 A 294 GLY ALA MET ASP GLU ASN ASP GLU GLY VAL ARG GLY THR SEQRES 2 A 294 CYS GLU ASP ALA SER LEU CYS LYS ARG PHE ALA VAL SER SEQRES 3 A 294 ILE GLY TYR TRP HIS ASP PRO TYR ILE GLN HIS PHE VAL SEQRES 4 A 294 ARG LEU SER LYS GLU ARG LYS ALA PRO GLU ILE ASN ARG SEQRES 5 A 294 GLY TYR PHE ALA ARG VAL HIS GLY VAL SER GLN LEU ILE SEQRES 6 A 294 LYS ALA PHE LEU ARG LYS THR GLU CYS HIS CYS GLN ILE SEQRES 7 A 294 VAL ASN LEU GLY ALA GLY MET ASP THR THR PHE TRP ARG SEQRES 8 A 294 LEU LYS ASP GLU ASP LEU LEU PRO SER LYS TYR PHE GLU SEQRES 9 A 294 VAL ASP PHE PRO MET ILE VAL THR ARG LYS LEU HIS SER SEQRES 10 A 294 ILE LYS CYS LYS PRO PRO LEU SER SER PRO ILE LEU GLU SEQRES 11 A 294 LEU HIS SER GLU ASP THR LEU GLN MET ASP GLY HIS ILE SEQRES 12 A 294 LEU ASP SER LYS ARG TYR ALA VAL ILE GLY ALA ASP LEU SEQRES 13 A 294 ARG ASP LEU SER GLU LEU GLU GLU LYS LEU LYS LYS CYS SEQRES 14 A 294 ASN MET ASN THR GLN LEU PRO THR LEU LEU ILE ALA GLU SEQRES 15 A 294 CYS VAL LEU VAL TYR MET THR PRO GLU GLN SER ALA ASN SEQRES 16 A 294 LEU LEU LYS TRP ALA ALA ASN SER PHE GLU ARG ALA MET SEQRES 17 A 294 PHE ILE ASN TYR GLU GLN VAL ASN GLU GLY LYS SER LEU SEQRES 18 A 294 GLU SER GLN LYS GLU ARG LEU LEU SER ASN GLY TRP GLU SEQRES 19 A 294 THR ALA SER ALA VAL ASP MET MET GLU LEU TYR ASN ARG SEQRES 20 A 294 LEU PRO ARG ALA GLU VAL SER ARG ILE GLU SER LEU GLU SEQRES 21 A 294 PHE LEU ASP GLU MET GLU LEU LEU GLU GLN LEU MET ARG SEQRES 22 A 294 HIS TYR CYS LEU CYS TRP ALA THR LYS GLY GLY ASN GLU SEQRES 23 A 294 LEU GLY LEU LYS GLU ILE THR TYR HET GOL A 701 6 HET SAM A 801 27 HET NA A 1 1 HETNAM GOL GLYCEROL HETNAM SAM S-ADENOSYLMETHIONINE HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 SAM C15 H22 N6 O5 S FORMUL 4 NA NA 1+ FORMUL 5 HOH *138(H2 O) HELIX 1 1 ASP A 32 GLY A 44 1 13 HELIX 2 2 TYR A 50 PHE A 54 5 5 HELIX 3 3 ALA A 63 GLU A 89 1 27 HELIX 4 4 THR A 103 GLU A 111 1 9 HELIX 5 5 PHE A 123 LYS A 137 1 15 HELIX 6 6 LYS A 137 LEU A 147 1 11 HELIX 7 7 ASP A 174 CYS A 185 1 12 HELIX 8 8 VAL A 200 MET A 204 5 5 HELIX 9 9 THR A 205 PHE A 220 1 16 HELIX 10 10 SER A 260 SER A 270 1 11 HELIX 11 11 MET A 281 ARG A 287 1 7 HELIX 12 12 PRO A 289 SER A 298 1 10 HELIX 13 13 LEU A 307 ARG A 313 1 7 HELIX 14 14 GLY A 328 ILE A 332 5 5 SHEET 1 A 8 ILE A 159 ASP A 161 0 SHEET 2 A 8 TYR A 165 GLY A 169 -1 O VAL A 167 N LEU A 160 SHEET 3 A 8 LYS A 117 ASP A 122 1 N GLU A 120 O ILE A 168 SHEET 4 A 8 GLN A 93 LEU A 97 1 N ILE A 94 O PHE A 119 SHEET 5 A 8 THR A 193 GLU A 198 1 O LEU A 194 N VAL A 95 SHEET 6 A 8 ALA A 223 GLN A 230 1 O ILE A 226 N ALA A 197 SHEET 7 A 8 TYR A 315 LYS A 322 -1 O ALA A 320 N PHE A 225 SHEET 8 A 8 THR A 275 ASP A 280 -1 N VAL A 279 O LEU A 317 SITE 1 AC1 6 ARG A 86 SER A 260 LEU A 261 GLU A 262 SITE 2 AC1 6 HOH A 354 HOH A 377 SITE 1 AC2 20 HOH A 3 ALA A 33 LYS A 37 ARG A 73 SITE 2 AC2 20 GLY A 98 ALA A 99 ASP A 122 PHE A 123 SITE 3 AC2 20 ILE A 126 PRO A 138 ALA A 170 ASP A 171 SITE 4 AC2 20 LEU A 172 ARG A 173 GLU A 198 CYS A 199 SITE 5 AC2 20 TYR A 203 HOH A 338 HOH A 342 HOH A 376 SITE 1 AC3 3 HIS A 53 PRO A 124 MET A 125 CRYST1 49.086 63.296 81.770 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020372 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015799 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012229 0.00000