HEADER TRANSFERASE 02-AUG-10 3O80 TITLE CRYSTAL STRUCTURE OF MONOMERIC KLHXK1 IN CRYSTAL FORM IX (OPEN STATE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEXOKINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLUYVEROMYCES LACTIS; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 28985; SOURCE 5 STRAIN: CBS2359/152; SOURCE 6 GENE: KLLA0D11352G, RAG5; SOURCE 7 EXPRESSION_SYSTEM: KLUYVEROMYCES LACTIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 28985; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: JA6-DELTA-RAG5; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PTS32X; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PTSRAG5 KEYWDS RNASEH-LIKE FOLD, HEXOKINASE, GLYCOLYSIS, GLUCOSE REPRESSION, ATP KEYWDS 2 BINDING, MIG1 BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.B.KUETTNER,K.KETTNER,A.KEIM,T.M.KRIEGEL,N.STRATER REVDAT 4 06-SEP-23 3O80 1 REMARK REVDAT 3 08-NOV-17 3O80 1 REMARK REVDAT 2 29-DEC-10 3O80 1 JRNL REVDAT 1 13-OCT-10 3O80 0 JRNL AUTH E.B.KUETTNER,K.KETTNER,A.KEIM,D.I.SVERGUN,D.VOLKE,D.SINGER, JRNL AUTH 2 R.HOFFMANN,E.C.MULLER,A.OTTO,T.M.KRIEGEL,N.STRATER JRNL TITL CRYSTAL STRUCTURE OF HEXOKINASE KLHXK1 OF KLUYVEROMYCES JRNL TITL 2 LACTIS: A MOLECULAR BASIS FOR UNDERSTANDING THE CONTROL OF JRNL TITL 3 YEAST HEXOKINASE FUNCTIONS VIA COVALENT MODIFICATION AND JRNL TITL 4 OLIGOMERIZATION. JRNL REF J.BIOL.CHEM. V. 285 41019 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20943665 JRNL DOI 10.1074/JBC.M110.185850 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.B.KUETTNER,T.M.KRIEGEL,A.KEIM,M.NAUMANN,N.STRATER REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDIES OF REMARK 1 TITL 2 HEXOKINASE KLHXK1 FROM KLUYVEROMYCES LACTIS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 63 430 2007 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 17565189 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 35317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1136 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2559 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3651 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.07000 REMARK 3 B22 (A**2) : -0.92000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.105 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3777 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5126 ; 1.890 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 468 ; 7.150 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;39.200 ;25.305 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 657 ;17.250 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.553 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 575 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2823 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2325 ; 2.315 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3759 ; 3.434 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1452 ; 6.042 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1367 ; 8.602 ; 9.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 76 REMARK 3 RESIDUE RANGE : A 210 A 456 REMARK 3 ORIGIN FOR THE GROUP (A): 21.6956 40.8065 1.4814 REMARK 3 T TENSOR REMARK 3 T11: 0.0347 T22: 0.0476 REMARK 3 T33: 0.0438 T12: -0.0300 REMARK 3 T13: -0.0012 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.3894 L22: 2.8681 REMARK 3 L33: 1.4324 L12: 0.4272 REMARK 3 L13: -0.0097 L23: 1.4192 REMARK 3 S TENSOR REMARK 3 S11: -0.0418 S12: 0.0160 S13: 0.0406 REMARK 3 S21: -0.0671 S22: 0.0174 S23: 0.0236 REMARK 3 S31: 0.0062 S32: 0.0444 S33: 0.0243 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 209 REMARK 3 RESIDUE RANGE : A 457 A 485 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9042 11.4929 12.3025 REMARK 3 T TENSOR REMARK 3 T11: 0.0935 T22: 0.1267 REMARK 3 T33: 0.0372 T12: 0.0147 REMARK 3 T13: -0.0240 T23: -0.0609 REMARK 3 L TENSOR REMARK 3 L11: 3.8675 L22: 2.6076 REMARK 3 L33: 3.4198 L12: -0.9914 REMARK 3 L13: -1.8673 L23: -0.5272 REMARK 3 S TENSOR REMARK 3 S11: -0.0686 S12: -0.6588 S13: 0.3204 REMARK 3 S21: 0.3014 S22: 0.2056 S23: -0.2313 REMARK 3 S31: 0.0376 S32: 0.4580 S33: -0.1370 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. FULL B FACTORS AND ANISO RECORDS WERE COMPUTED BY REMARK 3 CCP4 PROGRAMM TLSANL. REMARK 4 REMARK 4 3O80 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : 1ST MIRROR: SILICON, ACTIVE REMARK 200 SURFACE 50 NM RH-COATED; 2ND REMARK 200 MIRROR: GLAS, ACTIVE S URFACE 50 REMARK 200 NM RH-COATED REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36453 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50600 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3O08 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5MICROL RESERVOIR + 0.5MICROL REMARK 280 PROTEIN, RESERVOIR: 1.6M TRIAMMONIUM CITRATE PH 6, PROTEIN: 10MG/ REMARK 280 ML KLHXK1, 10MM TRIS PH 7.4, 1MM EDTA, 1MM DTT, 0.5MM PMSF, 2MM REMARK 280 AMPPCP, CRYSTAL SOAKED IN 50MM AMPPNP, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 292K, PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.87200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 24.87200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 59.17300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 116.95200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 59.17300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 116.95200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.87200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 59.17300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 116.95200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 24.87200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 59.17300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 116.95200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ARG A 3 REMARK 465 LEU A 4 REMARK 465 GLY A 5 REMARK 465 PRO A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 PRO A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 11 REMARK 465 ARG A 12 REMARK 465 LYS A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 MET A 16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 121 N - CA - C ANGL. DEV. = 15.0 DEGREES REMARK 500 PRO A 149 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 ASP A 186 CB - CG - OD1 ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 166 46.71 -92.70 REMARK 500 VAL A 278 -36.05 -136.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 120 GLY A 121 131.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ANP A 486 REMARK 610 ANP A 487 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 486 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 487 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3O08 RELATED DB: PDB REMARK 900 CRYSTAL FORM I OF KLHXK1 (DIMER) REMARK 900 RELATED ID: 3O1B RELATED DB: PDB REMARK 900 CRYSTAL FORM II OF KLHXK1 (DIMER) REMARK 900 RELATED ID: 3O1W RELATED DB: PDB REMARK 900 CRYSTAL FORM III OF KLHXK1 (DIMER) REMARK 900 RELATED ID: 3O4W RELATED DB: PDB REMARK 900 CRYSTAL FORM IV OF KLHXK1 (DIMER) REMARK 900 RELATED ID: 3O5B RELATED DB: PDB REMARK 900 CRYSTAL FORM VII OF KLHXK1 (DIMER) WITH GLUCOSE BOUND REMARK 900 RELATED ID: 3O6W RELATED DB: PDB REMARK 900 CRYSTAL FORM VIII OF KLHXK1 (MONOMER) REMARK 900 RELATED ID: 3O8M RELATED DB: PDB REMARK 900 CRYSTAL FORM XI OF KLHXK1 (MONONER) WITH GLUCOSE BOUND DBREF 3O80 A 1 485 UNP P33284 HXK_KLULA 1 485 SEQRES 1 A 485 MET VAL ARG LEU GLY PRO LYS LYS PRO PRO ALA ARG LYS SEQRES 2 A 485 GLY SER MET ALA ASP VAL PRO ALA ASN LEU MET GLU GLN SEQRES 3 A 485 ILE HIS GLY LEU GLU THR LEU PHE THR VAL SER SER GLU SEQRES 4 A 485 LYS MET ARG SER ILE VAL LYS HIS PHE ILE SER GLU LEU SEQRES 5 A 485 ASP LYS GLY LEU SER LYS LYS GLY GLY ASN ILE PRO MET SEQRES 6 A 485 ILE PRO GLY TRP VAL VAL GLU TYR PRO THR GLY LYS GLU SEQRES 7 A 485 THR GLY ASP PHE LEU ALA LEU ASP LEU GLY GLY THR ASN SEQRES 8 A 485 LEU ARG VAL VAL LEU VAL LYS LEU GLY GLY ASN HIS ASP SEQRES 9 A 485 PHE ASP THR THR GLN ASN LYS TYR ARG LEU PRO ASP HIS SEQRES 10 A 485 LEU ARG THR GLY THR SER GLU GLN LEU TRP SER PHE ILE SEQRES 11 A 485 ALA LYS CYS LEU LYS GLU PHE VAL ASP GLU TRP TYR PRO SEQRES 12 A 485 ASP GLY VAL SER GLU PRO LEU PRO LEU GLY PHE THR PHE SEQRES 13 A 485 SER TYR PRO ALA SER GLN LYS LYS ILE ASN SER GLY VAL SEQRES 14 A 485 LEU GLN ARG TRP THR LYS GLY PHE ASP ILE GLU GLY VAL SEQRES 15 A 485 GLU GLY HIS ASP VAL VAL PRO MET LEU GLN GLU GLN ILE SEQRES 16 A 485 GLU LYS LEU ASN ILE PRO ILE ASN VAL VAL ALA LEU ILE SEQRES 17 A 485 ASN ASP THR THR GLY THR LEU VAL ALA SER LEU TYR THR SEQRES 18 A 485 ASP PRO GLN THR LYS MET GLY ILE ILE ILE GLY THR GLY SEQRES 19 A 485 VAL ASN GLY ALA TYR TYR ASP VAL VAL SER GLY ILE GLU SEQRES 20 A 485 LYS LEU GLU GLY LEU LEU PRO GLU ASP ILE GLY PRO ASP SEQRES 21 A 485 SER PRO MET ALA ILE ASN CYS GLU TYR GLY SER PHE ASP SEQRES 22 A 485 ASN GLU HIS LEU VAL LEU PRO ARG THR LYS TYR ASP VAL SEQRES 23 A 485 ILE ILE ASP GLU GLU SER PRO ARG PRO GLY GLN GLN ALA SEQRES 24 A 485 PHE GLU LYS MET THR SER GLY TYR TYR LEU GLY GLU ILE SEQRES 25 A 485 MET ARG LEU VAL LEU LEU ASP LEU TYR ASP SER GLY PHE SEQRES 26 A 485 ILE PHE LYS ASP GLN ASP ILE SER LYS LEU LYS GLU ALA SEQRES 27 A 485 TYR VAL MET ASP THR SER TYR PRO SER LYS ILE GLU ASP SEQRES 28 A 485 ASP PRO PHE GLU ASN LEU GLU ASP THR ASP ASP LEU PHE SEQRES 29 A 485 LYS THR ASN LEU ASN ILE GLU THR THR VAL VAL GLU ARG SEQRES 30 A 485 LYS LEU ILE ARG LYS LEU ALA GLU LEU VAL GLY THR ARG SEQRES 31 A 485 ALA ALA ARG LEU THR VAL CYS GLY VAL SER ALA ILE CYS SEQRES 32 A 485 ASP LYS ARG GLY TYR LYS THR ALA HIS ILE ALA ALA ASP SEQRES 33 A 485 GLY SER VAL PHE ASN ARG TYR PRO GLY TYR LYS GLU LYS SEQRES 34 A 485 ALA ALA GLN ALA LEU LYS ASP ILE TYR ASN TRP ASP VAL SEQRES 35 A 485 GLU LYS MET GLU ASP HIS PRO ILE GLN LEU VAL ALA ALA SEQRES 36 A 485 GLU ASP GLY SER GLY VAL GLY ALA ALA ILE ILE ALA CYS SEQRES 37 A 485 LEU THR GLN LYS ARG LEU ALA ALA GLY LYS SER VAL GLY SEQRES 38 A 485 ILE LYS GLY GLU HET ANP A 486 23 HET ANP A 487 23 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 2 ANP 2(C10 H17 N6 O12 P3) FORMUL 4 HOH *99(H2 O) HELIX 1 1 PRO A 20 THR A 35 1 16 HELIX 2 2 SER A 37 LYS A 58 1 22 HELIX 3 3 PRO A 115 THR A 120 1 6 HELIX 4 4 THR A 122 TYR A 142 1 21 HELIX 5 5 ASP A 186 LEU A 198 1 13 HELIX 6 6 ASN A 209 ASP A 222 1 14 HELIX 7 7 SER A 244 GLU A 250 5 7 HELIX 8 8 GLU A 268 PHE A 272 5 5 HELIX 9 9 THR A 282 SER A 292 1 11 HELIX 10 10 GLN A 298 MET A 303 1 6 HELIX 11 11 SER A 305 TYR A 307 5 3 HELIX 12 12 TYR A 308 SER A 323 1 16 HELIX 13 13 THR A 343 ASP A 352 1 10 HELIX 14 14 LEU A 357 ASN A 369 1 13 HELIX 15 15 THR A 373 GLY A 407 1 35 HELIX 16 16 GLY A 417 TYR A 423 1 7 HELIX 17 17 GLY A 425 ASN A 439 1 15 HELIX 18 18 LYS A 444 HIS A 448 5 5 HELIX 19 19 GLY A 460 ALA A 476 1 17 SHEET 1 A 6 ILE A 66 PRO A 67 0 SHEET 2 A 6 PRO A 262 ASN A 266 -1 O ASN A 266 N ILE A 66 SHEET 3 A 6 VAL A 235 VAL A 242 -1 N TYR A 239 O ILE A 265 SHEET 4 A 6 THR A 225 ILE A 231 -1 N ILE A 230 O ASN A 236 SHEET 5 A 6 ALA A 411 ASP A 416 1 O ALA A 414 N ILE A 229 SHEET 6 A 6 ILE A 450 ALA A 454 1 O VAL A 453 N ALA A 415 SHEET 1 B 5 PHE A 105 ARG A 113 0 SHEET 2 B 5 ASN A 91 GLY A 100 -1 N LYS A 98 O ASP A 106 SHEET 3 B 5 THR A 79 LEU A 87 -1 N PHE A 82 O VAL A 97 SHEET 4 B 5 LEU A 150 PHE A 156 1 O PRO A 151 N LEU A 83 SHEET 5 B 5 ILE A 202 ILE A 208 1 O ALA A 206 N PHE A 154 SHEET 1 C 2 ALA A 160 SER A 161 0 SHEET 2 C 2 VAL A 169 LEU A 170 -1 O VAL A 169 N SER A 161 SITE 1 AC1 4 SER A 347 LYS A 348 ASP A 351 ARG A 422 SITE 1 AC2 11 PHE A 34 THR A 35 VAL A 36 SER A 37 SITE 2 AC2 11 SER A 38 GLU A 39 LEU A 386 THR A 389 SITE 3 AC2 11 ARG A 390 ARG A 393 ASP A 436 CRYST1 118.346 233.904 49.744 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008450 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004275 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020103 0.00000