HEADER OXIDOREDUCTASE 03-AUG-10 3O8Q TITLE 1.45 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF SHIKIMATE 5- TITLE 2 DEHYDROGENASE (AROE) FROM VIBRIO CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHIKIMATE 5-DEHYDROGENASE I ALPHA; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.25; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SHIKIMATE 5-DEHYDROGENASE I ALPHA; COMPND 8 CHAIN: B; COMPND 9 EC: 1.1.1.25; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE BIOVAR EL TOR; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: N16961; SOURCE 5 GENE: AROE, VCD_001524; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3(MAGIC); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR; SOURCE 13 ORGANISM_TAXID: 243277; SOURCE 14 STRAIN: N16961; SOURCE 15 GENE: AROE, VCD_001524; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21-DE3(MAGIC); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, ALPHA/BETA DOMAIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,S.H.LIGHT,L.SHUVALOVA,L.PAPAZISI,W.F.ANDERSON,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 06-SEP-23 3O8Q 1 REMARK LINK REVDAT 3 25-DEC-19 3O8Q 1 SEQADV SEQRES LINK REVDAT 2 08-NOV-17 3O8Q 1 REMARK REVDAT 1 18-AUG-10 3O8Q 0 JRNL AUTH G.MINASOV,S.H.LIGHT,L.SHUVALOVA,L.PAPAZISI,W.F.ANDERSON, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL 1.45 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF SHIKIMATE JRNL TITL 2 5-DEHYDROGENASE (AROE) FROM VIBRIO CHOLERAE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 83518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4417 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6110 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.1660 REMARK 3 BIN FREE R VALUE SET COUNT : 301 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4138 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 521 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30000 REMARK 3 B22 (A**2) : -0.32000 REMARK 3 B33 (A**2) : 0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.250 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4602 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3126 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6276 ; 1.539 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7635 ; 0.955 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 610 ; 4.122 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 211 ;33.429 ;24.218 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 792 ;11.110 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;12.621 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 682 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5359 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 955 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2887 ; 1.664 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1187 ; 2.198 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4661 ; 2.507 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1715 ; 3.684 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1615 ; 5.414 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4602 ; 1.875 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3O8Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060806. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88234 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.54900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1NYT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 6.8 MGR/ML, 0.5 SODIUM REMARK 280 CLORIDE, 0.01M TRIS-HCL PH 8.3, 10 MM CURCUMIN; SCREEN: PEGS II REMARK 280 (D1), 0.1M SODIUM ACETATE, 0.1M HEPES PH 7.5, 22% (W/V) PEG 4000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.43550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.42100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.57300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.42100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.43550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.57300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 196 REMARK 465 ASP A 197 REMARK 465 GLY A 198 REMARK 465 GLU A 199 REMARK 465 ALA B 194 REMARK 465 SER B 195 REMARK 465 LEU B 196 REMARK 465 ASP B 197 REMARK 465 ALA B 277 REMARK 465 LEU B 278 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 268 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 112.11 -171.82 REMARK 500 PRO A 67 31.96 -97.98 REMARK 500 LYS A 182 20.30 -144.19 REMARK 500 PRO A 205 0.75 -62.45 REMARK 500 GLN A 237 130.81 -171.02 REMARK 500 ILE B 15 59.12 33.60 REMARK 500 ILE B 15 59.03 33.60 REMARK 500 PRO B 67 30.74 -99.48 REMARK 500 PRO B 205 1.55 -67.47 REMARK 500 CYS B 235 132.82 -38.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 279 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 32 OE1 REMARK 620 2 GLN A 32 OE1 32.3 REMARK 620 3 HOH A 501 O 83.7 65.2 REMARK 620 4 HOH A 502 O 95.6 107.4 166.2 REMARK 620 5 HOH A 503 O 110.4 84.1 91.8 75.4 REMARK 620 6 HOH A 504 O 88.7 117.8 103.0 90.7 157.1 REMARK 620 7 HOH A 505 O 167.7 141.3 84.4 96.7 73.1 90.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 2 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG B 74 O REMARK 620 2 ALA B 76 O 96.9 REMARK 620 3 HOH B 399 O 89.3 89.2 REMARK 620 4 HOH B 464 O 76.5 83.7 163.2 REMARK 620 5 HOH B 516 O 161.5 91.6 107.3 88.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 279 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP90792 RELATED DB: TARGETDB DBREF 3O8Q A 1 278 UNP C3NTR0 C3NTR0_VIBCJ 1 278 DBREF 3O8Q B 4 278 UNP C3NTR0 C3NTR0_VIBCJ 4 278 SEQADV 3O8Q SER A -2 UNP C3NTR0 EXPRESSION TAG SEQADV 3O8Q ASN A -1 UNP C3NTR0 EXPRESSION TAG SEQADV 3O8Q ALA A 0 UNP C3NTR0 EXPRESSION TAG SEQRES 1 A 281 SER ASN ALA MET ALA SER GLN ILE ASP GLN TYR ALA VAL SEQRES 2 A 281 PHE GLY ASN PRO ILE ASN HIS SER LYS SER PRO PHE ILE SEQRES 3 A 281 HIS THR LEU PHE ALA ARG GLN THR GLN GLN SER MET ILE SEQRES 4 A 281 TYR THR ALA GLN CYS VAL PRO VAL ASP GLY PHE THR GLU SEQRES 5 A 281 ALA ALA LYS HIS PHE PHE ALA GLN GLY GLY ARG GLY CYS SEQRES 6 A 281 ASN VAL THR VAL PRO PHE LYS GLU GLU ALA TYR ARG PHE SEQRES 7 A 281 ALA ASP ARG LEU THR GLU ARG ALA ARG LEU ALA GLY ALA SEQRES 8 A 281 VAL ASN THR LEU LYS LYS LEU ASP ASP GLY GLU ILE LEU SEQRES 9 A 281 GLY ASP ASN THR ASP GLY GLU GLY LEU VAL GLN ASP LEU SEQRES 10 A 281 LEU ALA GLN GLN VAL LEU LEU LYS GLY ALA THR ILE LEU SEQRES 11 A 281 LEU ILE GLY ALA GLY GLY ALA ALA ARG GLY VAL LEU LYS SEQRES 12 A 281 PRO LEU LEU ASP GLN GLN PRO ALA SER ILE THR VAL THR SEQRES 13 A 281 ASN ARG THR PHE ALA LYS ALA GLU GLN LEU ALA GLU LEU SEQRES 14 A 281 VAL ALA ALA TYR GLY GLU VAL LYS ALA GLN ALA PHE GLU SEQRES 15 A 281 GLN LEU LYS GLN SER TYR ASP VAL ILE ILE ASN SER THR SEQRES 16 A 281 SER ALA SER LEU ASP GLY GLU LEU PRO ALA ILE ASP PRO SEQRES 17 A 281 VAL ILE PHE SER SER ARG SER VAL CYS TYR ASP MET MET SEQRES 18 A 281 TYR GLY LYS GLY TYR THR VAL PHE ASN GLN TRP ALA ARG SEQRES 19 A 281 GLN HIS GLY CYS ALA GLN ALA ILE ASP GLY LEU GLY MET SEQRES 20 A 281 LEU VAL GLY GLN ALA ALA GLU SER PHE MET LEU TRP ARG SEQRES 21 A 281 GLY LEU ARG PRO GLY THR LYS GLN ILE LEU ARG GLU LEU SEQRES 22 A 281 ARG LYS ASN LEU GLU GLY ALA LEU SEQRES 1 B 275 PCA ILE ASP GLN TYR ALA VAL PHE GLY ASN PRO ILE ASN SEQRES 2 B 275 HIS SER LYS SER PRO PHE ILE HIS THR LEU PHE ALA ARG SEQRES 3 B 275 GLN THR GLN GLN SER MET ILE TYR THR ALA GLN CYS VAL SEQRES 4 B 275 PRO VAL ASP GLY PHE THR GLU ALA ALA LYS HIS PHE PHE SEQRES 5 B 275 ALA GLN GLY GLY ARG GLY CYS ASN VAL THR VAL PRO PHE SEQRES 6 B 275 LYS GLU GLU ALA TYR ARG PHE ALA ASP ARG LEU THR GLU SEQRES 7 B 275 ARG ALA ARG LEU ALA GLY ALA VAL ASN THR LEU LYS LYS SEQRES 8 B 275 LEU ASP ASP GLY GLU ILE LEU GLY ASP ASN THR ASP GLY SEQRES 9 B 275 GLU GLY LEU VAL GLN ASP LEU LEU ALA GLN GLN VAL LEU SEQRES 10 B 275 LEU LYS GLY ALA THR ILE LEU LEU ILE GLY ALA GLY GLY SEQRES 11 B 275 ALA ALA ARG GLY VAL LEU LYS PRO LEU LEU ASP GLN GLN SEQRES 12 B 275 PRO ALA SER ILE THR VAL THR ASN ARG THR PHE ALA LYS SEQRES 13 B 275 ALA GLU GLN LEU ALA GLU LEU VAL ALA ALA TYR GLY GLU SEQRES 14 B 275 VAL LYS ALA GLN ALA PHE GLU GLN LEU LYS GLN SER TYR SEQRES 15 B 275 ASP VAL ILE ILE ASN SER THR SER ALA SER LEU ASP GLY SEQRES 16 B 275 GLU LEU PRO ALA ILE ASP PRO VAL ILE PHE SER SER ARG SEQRES 17 B 275 SER VAL CYS TYR ASP MET MET TYR GLY LYS GLY TYR THR SEQRES 18 B 275 VAL PHE ASN GLN TRP ALA ARG GLN HIS GLY CYS ALA GLN SEQRES 19 B 275 ALA ILE ASP GLY LEU GLY MET LEU VAL GLY GLN ALA ALA SEQRES 20 B 275 GLU SER PHE MET LEU TRP ARG GLY LEU ARG PRO GLY THR SEQRES 21 B 275 LYS GLN ILE LEU ARG GLU LEU ARG LYS ASN LEU GLU GLY SEQRES 22 B 275 ALA LEU MODRES 3O8Q PCA B 4 GLN PYROGLUTAMIC ACID HET PCA B 4 8 HET NA A 279 1 HET SO4 A 280 5 HET SO4 A 281 5 HET SO4 A 282 5 HET EPE A 283 15 HET NA B 2 1 HET SO4 B 279 5 HETNAM PCA PYROGLUTAMIC ACID HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 2 PCA C5 H7 N O3 FORMUL 3 NA 2(NA 1+) FORMUL 4 SO4 4(O4 S 2-) FORMUL 7 EPE C8 H18 N2 O4 S FORMUL 10 HOH *521(H2 O) HELIX 1 1 LYS A 19 THR A 31 1 13 HELIX 2 2 GLY A 46 GLN A 57 1 12 HELIX 3 3 PHE A 68 ALA A 76 1 9 HELIX 4 4 THR A 80 GLY A 87 1 8 HELIX 5 5 THR A 105 GLN A 117 1 13 HELIX 6 6 GLY A 132 ASP A 144 1 13 HELIX 7 7 THR A 156 ALA A 168 1 13 HELIX 8 8 ALA A 169 GLY A 171 5 3 HELIX 9 9 GLU A 179 LEU A 181 5 3 HELIX 10 10 ASP A 204 VAL A 206 5 3 HELIX 11 11 THR A 224 HIS A 233 1 10 HELIX 12 12 GLY A 241 GLY A 258 1 18 HELIX 13 13 GLY A 262 GLU A 275 1 14 HELIX 14 14 LYS B 19 GLN B 32 1 14 HELIX 15 15 GLY B 46 GLN B 57 1 12 HELIX 16 16 PHE B 68 ALA B 76 1 9 HELIX 17 17 THR B 80 GLY B 87 1 8 HELIX 18 18 THR B 105 GLN B 117 1 13 HELIX 19 19 GLY B 132 ASP B 144 1 13 HELIX 20 20 THR B 156 VAL B 167 1 12 HELIX 21 21 ALA B 168 GLY B 171 5 4 HELIX 22 22 GLU B 179 LEU B 181 5 3 HELIX 23 23 ASP B 204 PHE B 208 5 5 HELIX 24 24 THR B 224 HIS B 233 1 10 HELIX 25 25 GLY B 241 GLY B 258 1 18 HELIX 26 26 THR B 263 GLY B 276 1 14 SHEET 1 A 6 MET A 35 GLN A 40 0 SHEET 2 A 6 ASP A 6 PHE A 11 1 N VAL A 10 O GLN A 40 SHEET 3 A 6 GLY A 61 VAL A 64 1 O ASN A 63 N ALA A 9 SHEET 4 A 6 THR A 91 LYS A 94 -1 O LEU A 92 N CYS A 62 SHEET 5 A 6 ILE A 100 ASP A 103 -1 O ASP A 103 N THR A 91 SHEET 6 A 6 ARG A 78 LEU A 79 1 N ARG A 78 O GLY A 102 SHEET 1 B 6 VAL A 173 ALA A 177 0 SHEET 2 B 6 SER A 149 ASN A 154 1 N VAL A 152 O LYS A 174 SHEET 3 B 6 THR A 125 ILE A 129 1 N LEU A 128 O THR A 151 SHEET 4 B 6 TYR A 185 ASN A 190 1 O ILE A 189 N ILE A 129 SHEET 5 B 6 PHE A 208 ASP A 216 1 O TYR A 215 N ILE A 188 SHEET 6 B 6 GLN A 237 ILE A 239 1 O GLN A 237 N CYS A 214 SHEET 1 C 6 MET B 35 CYS B 41 0 SHEET 2 C 6 ASP B 6 GLY B 12 1 N VAL B 10 O GLN B 40 SHEET 3 C 6 GLY B 61 VAL B 64 1 O ASN B 63 N ALA B 9 SHEET 4 C 6 THR B 91 LYS B 94 -1 O LEU B 92 N CYS B 62 SHEET 5 C 6 ILE B 100 ASP B 103 -1 O ASP B 103 N THR B 91 SHEET 6 C 6 ARG B 78 LEU B 79 1 N ARG B 78 O GLY B 102 SHEET 1 D 6 VAL B 173 ALA B 177 0 SHEET 2 D 6 SER B 149 ASN B 154 1 N VAL B 152 O LYS B 174 SHEET 3 D 6 THR B 125 ILE B 129 1 N LEU B 128 O THR B 151 SHEET 4 D 6 VAL B 187 ASN B 190 1 O ILE B 189 N ILE B 129 SHEET 5 D 6 VAL B 213 ASP B 216 1 O TYR B 215 N ASN B 190 SHEET 6 D 6 GLN B 237 ILE B 239 1 O GLN B 237 N CYS B 214 SSBOND 1 CYS A 41 CYS B 41 1555 1555 2.10 LINK C PCA B 4 N ILE B 5 1555 1555 1.31 LINK OE1AGLN A 32 NA NA A 279 1555 1555 2.24 LINK OE1BGLN A 32 NA NA A 279 1555 1555 2.94 LINK NA NA A 279 O HOH A 501 1555 1555 2.56 LINK NA NA A 279 O HOH A 502 1555 1555 2.73 LINK NA NA A 279 O HOH A 503 1555 1555 2.61 LINK NA NA A 279 O BHOH A 504 1555 1555 2.55 LINK NA NA A 279 O HOH A 505 1555 1555 2.54 LINK NA NA B 2 O ARG B 74 1555 1555 2.56 LINK NA NA B 2 O ALA B 76 1555 1555 2.26 LINK NA NA B 2 O HOH B 399 1555 1555 2.43 LINK NA NA B 2 O HOH B 464 1555 1555 2.51 LINK NA NA B 2 O HOH B 516 1555 1555 2.35 CISPEP 1 VAL A 66 PRO A 67 0 0.31 CISPEP 2 VAL A 66 PRO A 67 0 2.87 CISPEP 3 ASN B 13 PRO B 14 0 4.10 CISPEP 4 VAL B 66 PRO B 67 0 5.31 CISPEP 5 VAL B 66 PRO B 67 0 -0.26 SITE 1 AC1 6 GLN A 32 HOH A 501 HOH A 502 HOH A 503 SITE 2 AC1 6 HOH A 504 HOH A 505 SITE 1 AC2 4 THR A 65 VAL A 66 LYS A 69 HOH A 463 SITE 1 AC3 6 VAL A 66 PRO A 67 PHE A 68 LYS A 69 SITE 2 AC3 6 GLU A 70 HOH A 493 SITE 1 AC4 6 GLY A 262 THR A 263 LYS A 264 HOH A 288 SITE 2 AC4 6 HOH A 488 HOH A 506 SITE 1 AC5 10 THR A 80 GLU A 81 ARG A 82 GLU A 108 SITE 2 AC5 10 GLN A 145 HOH A 393 HOH A 416 HOH A 454 SITE 3 AC5 10 HOH A 473 GLU B 172 SITE 1 AC6 5 ARG B 74 ALA B 76 HOH B 399 HOH B 464 SITE 2 AC6 5 HOH B 516 SITE 1 AC7 8 VAL B 66 PRO B 67 PHE B 68 LYS B 69 SITE 2 AC7 8 GLU B 70 HOH B 352 HOH B 507 HOH B 517 CRYST1 56.871 63.146 136.842 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017584 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015836 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007308 0.00000