HEADER DNA BINDING PROTEIN/DNA 04-AUG-10 3OA6 TITLE HUMAN MSL3 CHROMODOMAIN BOUND TO DNA AND H4K20ME1 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALE-SPECIFIC LETHAL 3 HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CHROMODOMAIN; COMPND 5 SYNONYM: MALE-SPECIFIC LETHAL-3 PROTEIN-LIKE 1, MSL3-LIKE 1, MALE- COMPND 6 SPECIFIC LETHAL-3 HOMOLOG 1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*GP*CP*TP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*A)- COMPND 10 3'); COMPND 11 CHAIN: C, E; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*AP*G)- COMPND 15 3'); COMPND 16 CHAIN: D, F; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: H4 PEPTIDE MONOMETHYLATED AT LYSINE 20; COMPND 20 CHAIN: G; COMPND 21 FRAGMENT: HISTONE H4; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MSL3, MSL3L1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 MOL_ID: 4; SOURCE 16 SYNTHETIC: YES KEYWDS CHROMODOMAIN, MSL3, HISTONE H4 TAIL, DNA BACKBONE RECOGNITION, KEYWDS 2 METHYLLYSINE RECOGNITION, H4K20ME1, AROMATIC CAGE, MSL COMPLEX, KEYWDS 3 TRANSCRIPTION UPREGULATION, DNA BINDING PROTEIN-DNA COMPLEX, DNA KEYWDS 4 BINDING PROTEIN, DNA EXPDTA X-RAY DIFFRACTION AUTHOR D.KIM,P.HUANG,F.RASTINEJAD,S.KHORASANIZADEH REVDAT 2 08-NOV-17 3OA6 1 REMARK REVDAT 1 18-AUG-10 3OA6 0 SPRSDE 18-AUG-10 3OA6 3M9P JRNL AUTH D.KIM,B.J.BLUS,V.CHANDRA,P.HUANG,F.RASTINEJAD, JRNL AUTH 2 S.KHORASANIZADEH JRNL TITL CORECOGNITION OF DNA AND A METHYLATED HISTONE TAIL BY THE JRNL TITL 2 MSL3 CHROMODOMAIN. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 1027 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20657587 JRNL DOI 10.1038/NSMB.1856 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 16389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 880 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1091 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1435 REMARK 3 NUCLEIC ACID ATOMS : 1300 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.31000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : -0.21000 REMARK 3 B13 (A**2) : -0.18000 REMARK 3 B23 (A**2) : 0.02000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.279 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.241 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.793 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2928 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1660 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4215 ; 1.940 ; 2.503 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4057 ; 1.641 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 170 ; 7.530 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;31.585 ;22.179 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 266 ;22.198 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;22.872 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 453 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2291 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 464 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 858 ; 1.473 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 345 ; 0.245 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1373 ; 2.557 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2070 ; 1.273 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2842 ; 2.073 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 10 A 91 2 REMARK 3 1 B 10 B 91 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 485 ; 0.030 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 721 ; 0.070 ; 0.500 REMARK 3 TIGHT THERMAL 1 A (A**2): 485 ; 0.130 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 721 ; 0.090 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 91 REMARK 3 RESIDUE RANGE : B 10 B 91 REMARK 3 ORIGIN FOR THE GROUP (A): -7.3670 -1.6460 8.8290 REMARK 3 T TENSOR REMARK 3 T11: 0.2132 T22: 0.0381 REMARK 3 T33: 0.0917 T12: 0.1691 REMARK 3 T13: 0.1122 T23: -0.0916 REMARK 3 L TENSOR REMARK 3 L11: 0.0017 L22: 0.3745 REMARK 3 L33: 6.5049 L12: -0.0243 REMARK 3 L13: -0.0801 L23: 0.9637 REMARK 3 S TENSOR REMARK 3 S11: -0.1190 S12: 0.0381 S13: -0.0078 REMARK 3 S21: 0.0104 S22: 0.0174 S23: 0.0693 REMARK 3 S31: -0.0404 S32: 0.1160 S33: 0.1017 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 16 REMARK 3 RESIDUE RANGE : E 1 E 16 REMARK 3 RESIDUE RANGE : D 1 D 16 REMARK 3 RESIDUE RANGE : F 1 F 16 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9030 -11.5610 -1.5680 REMARK 3 T TENSOR REMARK 3 T11: 0.2722 T22: -0.1216 REMARK 3 T33: 0.1008 T12: 0.0960 REMARK 3 T13: 0.1220 T23: 0.0548 REMARK 3 L TENSOR REMARK 3 L11: 0.2965 L22: 0.3322 REMARK 3 L33: 4.0979 L12: -0.3116 REMARK 3 L13: -0.4360 L23: 0.5875 REMARK 3 S TENSOR REMARK 3 S11: -0.0370 S12: -0.0659 S13: -0.1910 REMARK 3 S21: 0.2067 S22: -0.0034 S23: 0.0045 REMARK 3 S31: 0.5442 S32: -0.0057 S33: 0.0404 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 18 G 22 REMARK 3 RESIDUE RANGE : B 102 B 102 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5740 -9.8030 21.0610 REMARK 3 T TENSOR REMARK 3 T11: 1.0193 T22: 0.6373 REMARK 3 T33: 0.5324 T12: -0.1920 REMARK 3 T13: 0.1311 T23: -0.1482 REMARK 3 L TENSOR REMARK 3 L11: 21.2686 L22: 8.4661 REMARK 3 L33: 14.1217 L12: -5.1933 REMARK 3 L13: 12.7894 L23: 3.6809 REMARK 3 S TENSOR REMARK 3 S11: 0.2827 S12: -0.1217 S13: -1.9781 REMARK 3 S21: 1.4839 S22: -1.2556 S23: 0.3203 REMARK 3 S31: 4.8630 S32: 4.9085 S33: 0.9728 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3OA6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17458 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04M BARIUM ACETATE, 0.05M SODIUM REMARK 280 CACODYLATE, 18% 2-METHYL-2,4-PENTANEDIOL, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 LYS A -7 REMARK 465 LYS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 GLU A 5 REMARK 465 GLY A 6 REMARK 465 MET A 7 REMARK 465 LYS A 8 REMARK 465 ARG A 93 REMARK 465 LEU A 94 REMARK 465 ARG A 95 REMARK 465 SER A 96 REMARK 465 THR A 97 REMARK 465 GLY A 98 REMARK 465 ARG A 99 REMARK 465 LYS A 100 REMARK 465 LYS A 101 REMARK 465 MET B -8 REMARK 465 LYS B -7 REMARK 465 LYS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 GLU B 5 REMARK 465 GLY B 6 REMARK 465 MET B 7 REMARK 465 LYS B 8 REMARK 465 ARG B 93 REMARK 465 LEU B 94 REMARK 465 ARG B 95 REMARK 465 SER B 96 REMARK 465 THR B 97 REMARK 465 GLY B 98 REMARK 465 ARG B 99 REMARK 465 LYS B 100 REMARK 465 LYS B 101 REMARK 465 GLY G 9 REMARK 465 LEU G 10 REMARK 465 GLY G 11 REMARK 465 LYS G 12 REMARK 465 GLY G 13 REMARK 465 GLY G 14 REMARK 465 ALA G 15 REMARK 465 LYS G 16 REMARK 465 ARG G 17 REMARK 465 ARG G 23 REMARK 465 ASP G 24 REMARK 465 ASN G 25 REMARK 465 ILE G 26 REMARK 465 GLN G 27 REMARK 465 GLY G 28 REMARK 465 ILE G 29 REMARK 465 THR G 30 REMARK 465 LYS G 31 REMARK 465 TYR G 32 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 9 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE B 9 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL G 21 CG1 CG2 REMARK 470 LEU G 22 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 57 O HOH A 122 1.68 REMARK 500 OP2 DC F 6 O HOH F 50 1.90 REMARK 500 OH TYR A 31 O HOH A 118 2.02 REMARK 500 ND2 ASN B 57 O HOH B 127 2.07 REMARK 500 OE2 GLU A 69 O HOH A 133 2.10 REMARK 500 N LYS B 10 O HOH B 108 2.12 REMARK 500 N PHE B 9 O HOH B 116 2.12 REMARK 500 OE2 GLU A 51 O HOH A 135 2.14 REMARK 500 OP1 DA C 11 O HOH C 76 2.15 REMARK 500 O HOH E 30 O HOH E 31 2.15 REMARK 500 N LYS A 10 O HOH A 133 2.16 REMARK 500 OE2 GLU B 69 O HOH B 108 2.16 REMARK 500 N2 DG C 5 O2 DC D 13 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O3' DA C 16 O5' DG E 1 1565 1.98 REMARK 500 O4 DT F 7 O HOH B 133 1655 2.11 REMARK 500 O5' DG C 1 O3' DA E 16 1546 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA C 9 O3' DA C 9 C3' -0.041 REMARK 500 DT E 7 O3' DT E 7 C3' -0.036 REMARK 500 DA E 9 O3' DA E 9 C3' 0.089 REMARK 500 DG E 12 O3' DG E 12 C3' -0.070 REMARK 500 DG E 13 O3' DG E 13 C3' -0.047 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 1 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC C 2 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG C 6 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT C 7 O4' - C1' - N1 ANGL. DEV. = 6.5 DEGREES REMARK 500 DT C 14 N3 - C4 - O4 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT C 14 C5 - C4 - O4 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC D 1 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT D 7 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DG D 10 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DA D 11 C1' - O4' - C4' ANGL. DEV. = -8.0 DEGREES REMARK 500 DA D 11 C4' - C3' - C2' ANGL. DEV. = -10.6 DEGREES REMARK 500 DA D 11 O4' - C1' - N9 ANGL. DEV. = 6.4 DEGREES REMARK 500 DC D 12 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC D 13 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT D 14 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA D 15 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG D 16 O4' - C1' - N9 ANGL. DEV. = 6.4 DEGREES REMARK 500 DC E 2 C4' - C3' - C2' ANGL. DEV. = -7.0 DEGREES REMARK 500 DC E 2 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DC E 2 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG E 5 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 DG E 6 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES REMARK 500 DG E 6 C2 - N3 - C4 ANGL. DEV. = -3.5 DEGREES REMARK 500 DG E 6 N3 - C4 - C5 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG E 6 N3 - C4 - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DA E 10 C3' - O3' - P ANGL. DEV. = -7.3 DEGREES REMARK 500 DA E 11 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 DG E 12 O4' - C4' - C3' ANGL. DEV. = 3.8 DEGREES REMARK 500 DG E 12 C1' - O4' - C4' ANGL. DEV. = -7.1 DEGREES REMARK 500 DG E 12 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG E 12 N3 - C4 - C5 ANGL. DEV. = 4.1 DEGREES REMARK 500 DG E 12 C4 - C5 - N7 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG E 12 C5 - N7 - C8 ANGL. DEV. = -3.8 DEGREES REMARK 500 DG E 12 N9 - C4 - C5 ANGL. DEV. = -2.9 DEGREES REMARK 500 DT E 14 O4' - C1' - N1 ANGL. DEV. = -7.3 DEGREES REMARK 500 DC E 15 O4' - C1' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DA E 16 O5' - C5' - C4' ANGL. DEV. = -5.8 DEGREES REMARK 500 DA E 16 O4' - C1' - N9 ANGL. DEV. = 6.5 DEGREES REMARK 500 DC F 1 N1 - C2 - O2 ANGL. DEV. = -3.7 DEGREES REMARK 500 DC F 1 C2 - N1 - C1' ANGL. DEV. = -6.8 DEGREES REMARK 500 DG F 3 OP1 - P - OP2 ANGL. DEV. = 9.5 DEGREES REMARK 500 DG F 3 N3 - C4 - N9 ANGL. DEV. = -3.6 DEGREES REMARK 500 DA F 4 O4' - C1' - N9 ANGL. DEV. = -5.9 DEGREES REMARK 500 DC F 5 O4' - C1' - N1 ANGL. DEV. = 8.0 DEGREES REMARK 500 DC F 6 O4' - C1' - N1 ANGL. DEV. = 6.3 DEGREES REMARK 500 DC F 6 C2 - N3 - C4 ANGL. DEV. = -3.1 DEGREES REMARK 500 DT F 8 O4' - C1' - N1 ANGL. DEV. = -4.9 DEGREES REMARK 500 DC F 12 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DA F 15 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG F 16 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MLZ G 20 -132.99 57.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M9Q RELATED DB: PDB REMARK 900 DROSOPHILA MSL3 CHROMODOMAIN DBREF 3OA6 A 1 101 UNP Q8N5Y2 MS3L1_HUMAN 1 101 DBREF 3OA6 B 1 101 UNP Q8N5Y2 MS3L1_HUMAN 1 101 DBREF 3OA6 C 1 16 PDB 3OA6 3OA6 1 16 DBREF 3OA6 E 1 16 PDB 3OA6 3OA6 1 16 DBREF 3OA6 D 1 16 PDB 3OA6 3OA6 1 16 DBREF 3OA6 F 1 16 PDB 3OA6 3OA6 1 16 DBREF 3OA6 G 9 32 PDB 3OA6 3OA6 9 32 SEQADV 3OA6 MET A -8 UNP Q8N5Y2 EXPRESSION TAG SEQADV 3OA6 LYS A -7 UNP Q8N5Y2 EXPRESSION TAG SEQADV 3OA6 LYS A -6 UNP Q8N5Y2 EXPRESSION TAG SEQADV 3OA6 HIS A -5 UNP Q8N5Y2 EXPRESSION TAG SEQADV 3OA6 HIS A -4 UNP Q8N5Y2 EXPRESSION TAG SEQADV 3OA6 HIS A -3 UNP Q8N5Y2 EXPRESSION TAG SEQADV 3OA6 HIS A -2 UNP Q8N5Y2 EXPRESSION TAG SEQADV 3OA6 HIS A -1 UNP Q8N5Y2 EXPRESSION TAG SEQADV 3OA6 HIS A 0 UNP Q8N5Y2 EXPRESSION TAG SEQADV 3OA6 MET B -8 UNP Q8N5Y2 EXPRESSION TAG SEQADV 3OA6 LYS B -7 UNP Q8N5Y2 EXPRESSION TAG SEQADV 3OA6 LYS B -6 UNP Q8N5Y2 EXPRESSION TAG SEQADV 3OA6 HIS B -5 UNP Q8N5Y2 EXPRESSION TAG SEQADV 3OA6 HIS B -4 UNP Q8N5Y2 EXPRESSION TAG SEQADV 3OA6 HIS B -3 UNP Q8N5Y2 EXPRESSION TAG SEQADV 3OA6 HIS B -2 UNP Q8N5Y2 EXPRESSION TAG SEQADV 3OA6 HIS B -1 UNP Q8N5Y2 EXPRESSION TAG SEQADV 3OA6 HIS B 0 UNP Q8N5Y2 EXPRESSION TAG SEQRES 1 A 110 MET LYS LYS HIS HIS HIS HIS HIS HIS MET SER ALA SER SEQRES 2 A 110 GLU GLY MET LYS PHE LYS PHE HIS SER GLY GLU LYS VAL SEQRES 3 A 110 LEU CYS PHE GLU PRO ASP PRO THR LYS ALA ARG VAL LEU SEQRES 4 A 110 TYR ASP ALA LYS ILE VAL ASP VAL ILE VAL GLY LYS ASP SEQRES 5 A 110 GLU LYS GLY ARG LYS ILE PRO GLU TYR LEU ILE HIS PHE SEQRES 6 A 110 ASN GLY TRP ASN ARG SER TRP ASP ARG TRP ALA ALA GLU SEQRES 7 A 110 ASP HIS VAL LEU ARG ASP THR ASP GLU ASN ARG ARG LEU SEQRES 8 A 110 GLN ARG LYS LEU ALA ARG LYS ALA VAL ALA ARG LEU ARG SEQRES 9 A 110 SER THR GLY ARG LYS LYS SEQRES 1 B 110 MET LYS LYS HIS HIS HIS HIS HIS HIS MET SER ALA SER SEQRES 2 B 110 GLU GLY MET LYS PHE LYS PHE HIS SER GLY GLU LYS VAL SEQRES 3 B 110 LEU CYS PHE GLU PRO ASP PRO THR LYS ALA ARG VAL LEU SEQRES 4 B 110 TYR ASP ALA LYS ILE VAL ASP VAL ILE VAL GLY LYS ASP SEQRES 5 B 110 GLU LYS GLY ARG LYS ILE PRO GLU TYR LEU ILE HIS PHE SEQRES 6 B 110 ASN GLY TRP ASN ARG SER TRP ASP ARG TRP ALA ALA GLU SEQRES 7 B 110 ASP HIS VAL LEU ARG ASP THR ASP GLU ASN ARG ARG LEU SEQRES 8 B 110 GLN ARG LYS LEU ALA ARG LYS ALA VAL ALA ARG LEU ARG SEQRES 9 B 110 SER THR GLY ARG LYS LYS SEQRES 1 C 16 DG DC DT DA DG DG DT DC DA DA DA DG DG SEQRES 2 C 16 DT DC DA SEQRES 1 D 16 DC DT DG DA DC DC DT DT DT DG DA DC DC SEQRES 2 D 16 DT DA DG SEQRES 1 E 16 DG DC DT DA DG DG DT DC DA DA DA DG DG SEQRES 2 E 16 DT DC DA SEQRES 1 F 16 DC DT DG DA DC DC DT DT DT DG DA DC DC SEQRES 2 F 16 DT DA DG SEQRES 1 G 24 GLY LEU GLY LYS GLY GLY ALA LYS ARG HIS ARG MLZ VAL SEQRES 2 G 24 LEU ARG ASP ASN ILE GLN GLY ILE THR LYS TYR MODRES 3OA6 MLZ G 20 LYS N-METHYL-LYSINE HET MLZ G 20 10 HET IMD B 102 5 HETNAM MLZ N-METHYL-LYSINE HETNAM IMD IMIDAZOLE FORMUL 7 MLZ C7 H16 N2 O2 FORMUL 8 IMD C3 H5 N2 1+ FORMUL 9 HOH *108(H2 O) HELIX 1 1 ASN A 60 ASP A 64 5 5 HELIX 2 2 THR A 76 ALA A 92 1 17 HELIX 3 3 ASN B 60 ASP B 64 5 5 HELIX 4 4 THR B 76 ALA B 92 1 17 SHEET 1 A 5 ARG A 65 ALA A 68 0 SHEET 2 A 5 LYS A 48 PHE A 56 -1 N ILE A 54 O ARG A 65 SHEET 3 A 5 LEU A 30 LYS A 42 -1 N ASP A 37 O LEU A 53 SHEET 4 A 5 LYS A 16 PHE A 20 -1 N VAL A 17 O ALA A 33 SHEET 5 A 5 VAL A 72 ARG A 74 -1 O LEU A 73 N LEU A 18 SHEET 1 B 5 ARG B 65 ALA B 68 0 SHEET 2 B 5 LYS B 48 PHE B 56 -1 N ILE B 54 O ARG B 65 SHEET 3 B 5 LEU B 30 LYS B 42 -1 N ASP B 37 O LEU B 53 SHEET 4 B 5 LYS B 16 PHE B 20 -1 N VAL B 17 O ALA B 33 SHEET 5 B 5 VAL B 72 ARG B 74 -1 O LEU B 73 N LEU B 18 LINK C ARG G 19 N MLZ G 20 1555 1555 1.32 LINK C MLZ G 20 N VAL G 21 1555 1555 1.33 SITE 1 AC1 2 TRP B 63 HOH B 126 CRYST1 37.976 44.094 67.500 81.35 89.84 90.04 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026332 0.000020 -0.000078 0.00000 SCALE2 0.000000 0.022679 -0.003449 0.00000 SCALE3 0.000000 0.000000 0.014985 0.00000