data_3OA7 # _entry.id 3OA7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.284 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3OA7 RCSB RCSB060859 WWPDB D_1000060859 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3OA7 _pdbx_database_status.recvd_initial_deposition_date 2010-08-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Klenchin, V.A.' 1 ? 'Frye, J.J.' 2 ? 'Rayment, I.' 3 ? # _citation.id primary _citation.title 'Structure-function analysis of the C-terminal domain of CNM67, a core component of the Saccharomyces cerevisiae spindle pole body.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 286 _citation.page_first 18240 _citation.page_last 18250 _citation.year 2011 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21454609 _citation.pdbx_database_id_DOI 10.1074/jbc.M111.227371 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Klenchin, V.A.' 1 primary 'Frye, J.J.' 2 primary 'Jones, M.H.' 3 primary 'Winey, M.' 4 primary 'Rayment, I.' 5 # _cell.entry_id 3OA7 _cell.length_a 58.760 _cell.length_b 198.563 _cell.length_c 53.232 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3OA7 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Head morphogenesis protein, Chaotic nuclear migration protein 67 fusion protein' 24281.709 1 ? ? ? ? 2 water nat water 18.015 18 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Late protein GP7-Cnm67 fusion protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GGSGPLKPEEHEDILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERITI KNILQSRPDISAEECNFL(MSE)VEQIDSANLTTLQNTVKEIVLAVGIPYPKLRRKIPLLAIKLKYENI(MSE)LSNFAQ RLHRQVYSQE(MSE)NLKKFTDQAYYDF(MSE)STRR(MSE)DSIDHHLERCLDHLYDHILEK(MSE)VK ; _entity_poly.pdbx_seq_one_letter_code_can ;GGSGPLKPEEHEDILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERITI KNILQSRPDISAEECNFLMVEQIDSANLTTLQNTVKEIVLAVGIPYPKLRRKIPLLAIKLKYENIMLSNFAQRLHRQVYS QEMNLKKFTDQAYYDFMSTRRMDSIDHHLERCLDHLYDHILEKMVK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 SER n 1 4 GLY n 1 5 PRO n 1 6 LEU n 1 7 LYS n 1 8 PRO n 1 9 GLU n 1 10 GLU n 1 11 HIS n 1 12 GLU n 1 13 ASP n 1 14 ILE n 1 15 LEU n 1 16 ASN n 1 17 LYS n 1 18 LEU n 1 19 LEU n 1 20 ASP n 1 21 PRO n 1 22 GLU n 1 23 LEU n 1 24 ALA n 1 25 GLN n 1 26 SER n 1 27 GLU n 1 28 ARG n 1 29 THR n 1 30 GLU n 1 31 ALA n 1 32 LEU n 1 33 GLN n 1 34 GLN n 1 35 LEU n 1 36 ARG n 1 37 VAL n 1 38 ASN n 1 39 TYR n 1 40 GLY n 1 41 SER n 1 42 PHE n 1 43 VAL n 1 44 SER n 1 45 GLU n 1 46 TYR n 1 47 ASN n 1 48 ASP n 1 49 LEU n 1 50 THR n 1 51 LYS n 1 52 SER n 1 53 HIS n 1 54 ASN n 1 55 THR n 1 56 LEU n 1 57 SER n 1 58 LYS n 1 59 GLU n 1 60 LEU n 1 61 ASP n 1 62 ASN n 1 63 LEU n 1 64 ARG n 1 65 SER n 1 66 ARG n 1 67 PHE n 1 68 GLY n 1 69 ASN n 1 70 LEU n 1 71 GLU n 1 72 GLY n 1 73 ASN n 1 74 THR n 1 75 SER n 1 76 GLU n 1 77 ARG n 1 78 ILE n 1 79 THR n 1 80 ILE n 1 81 LYS n 1 82 ASN n 1 83 ILE n 1 84 LEU n 1 85 GLN n 1 86 SER n 1 87 ARG n 1 88 PRO n 1 89 ASP n 1 90 ILE n 1 91 SER n 1 92 ALA n 1 93 GLU n 1 94 GLU n 1 95 CYS n 1 96 ASN n 1 97 PHE n 1 98 LEU n 1 99 MSE n 1 100 VAL n 1 101 GLU n 1 102 GLN n 1 103 ILE n 1 104 ASP n 1 105 SER n 1 106 ALA n 1 107 ASN n 1 108 LEU n 1 109 THR n 1 110 THR n 1 111 LEU n 1 112 GLN n 1 113 ASN n 1 114 THR n 1 115 VAL n 1 116 LYS n 1 117 GLU n 1 118 ILE n 1 119 VAL n 1 120 LEU n 1 121 ALA n 1 122 VAL n 1 123 GLY n 1 124 ILE n 1 125 PRO n 1 126 TYR n 1 127 PRO n 1 128 LYS n 1 129 LEU n 1 130 ARG n 1 131 ARG n 1 132 LYS n 1 133 ILE n 1 134 PRO n 1 135 LEU n 1 136 LEU n 1 137 ALA n 1 138 ILE n 1 139 LYS n 1 140 LEU n 1 141 LYS n 1 142 TYR n 1 143 GLU n 1 144 ASN n 1 145 ILE n 1 146 MSE n 1 147 LEU n 1 148 SER n 1 149 ASN n 1 150 PHE n 1 151 ALA n 1 152 GLN n 1 153 ARG n 1 154 LEU n 1 155 HIS n 1 156 ARG n 1 157 GLN n 1 158 VAL n 1 159 TYR n 1 160 SER n 1 161 GLN n 1 162 GLU n 1 163 MSE n 1 164 ASN n 1 165 LEU n 1 166 LYS n 1 167 LYS n 1 168 PHE n 1 169 THR n 1 170 ASP n 1 171 GLN n 1 172 ALA n 1 173 TYR n 1 174 TYR n 1 175 ASP n 1 176 PHE n 1 177 MSE n 1 178 SER n 1 179 THR n 1 180 ARG n 1 181 ARG n 1 182 MSE n 1 183 ASP n 1 184 SER n 1 185 ILE n 1 186 ASP n 1 187 HIS n 1 188 HIS n 1 189 LEU n 1 190 GLU n 1 191 ARG n 1 192 CYS n 1 193 LEU n 1 194 ASP n 1 195 HIS n 1 196 LEU n 1 197 TYR n 1 198 ASP n 1 199 HIS n 1 200 ILE n 1 201 LEU n 1 202 GLU n 1 203 LYS n 1 204 MSE n 1 205 VAL n 1 206 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 5 53 'virus, yeast' ? '7, CNM67, YNL225C, N1264' ? ? ? ? ? ? 'Bacillus phage phi29' 10756 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample ? 54 206 'virus, yeast' ? '7, CNM67, YNL225C, N1264' ? ? ? ? ? ? 'Saccharomyces cerevisiae' 4932 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP VG7_BPPH2 P13848 1 PLKPEEHEDILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSH 2 ? 2 UNP CNM67_YEAST P53865 1 ;NTLSKELDNLRSRFGNLEGNTSERITIKNILQSRPDISAEECNFLMVEQIDSANLTTLQNTVKEIVLAVGIPYPKLRRKI PLLAIKLKYENIMLSNFAQRLHRQVYSQEMNLKKFTDQAYYDFMSTRRMDSIDHHLERCLDHLYDHILEKMVK ; 429 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3OA7 A 5 ? 53 ? P13848 2 ? 50 ? 2 50 2 2 3OA7 A 54 ? 206 ? P53865 429 ? 581 ? 429 581 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3OA7 GLY A 1 ? UNP P13848 ? ? 'EXPRESSION TAG' -2 1 1 3OA7 GLY A 2 ? UNP P13848 ? ? 'EXPRESSION TAG' -1 2 1 3OA7 SER A 3 ? UNP P13848 ? ? 'EXPRESSION TAG' 0 3 1 3OA7 GLY A 4 ? UNP P13848 ? ? 'EXPRESSION TAG' 1 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3OA7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.23 _exptl_crystal.density_percent_sol 61.98 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.pdbx_details '10% monomethyl PEG 5000, 1.0M tetramethyl ammonium chloride, 100 mM CHES, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210r' _diffrn_detector.pdbx_collection_date 2007-08-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'ROSENBAUM-ROCK DOUBLE-CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97921 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97921 # _reflns.entry_id 3OA7 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 2.3 _reflns.number_obs 14536 _reflns.number_all 14536 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.101 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3OA7 _refine.ls_number_reflns_obs 13508 _refine.ls_number_reflns_all 13554 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 99.66 _refine.ls_R_factor_obs 0.23931 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23765 _refine.ls_R_factor_R_free 0.27069 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 719 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.947 _refine.B_iso_mean 81.842 _refine.aniso_B[1][1] 2.43 _refine.aniso_B[2][2] -1.39 _refine.aniso_B[3][3] -1.04 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.00 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.218 _refine.overall_SU_ML 0.133 _refine.overall_SU_B 13.059 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.265 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1585 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 1603 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.019 0.022 ? 1610 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.677 1.977 ? 2170 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.058 5.000 ? 191 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.978 24.588 ? 85 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 20.573 15.000 ? 310 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.645 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.114 0.200 ? 244 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.021 ? 1207 'X-RAY DIFFRACTION' ? r_mcbond_it 5.283 6.000 ? 965 'X-RAY DIFFRACTION' ? r_mcangle_it 8.620 60.000 ? 1565 'X-RAY DIFFRACTION' ? r_scbond_it 9.194 8.000 ? 645 'X-RAY DIFFRACTION' ? r_scangle_it 14.292 80.000 ? 605 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.300 _refine_ls_shell.d_res_low 2.359 _refine_ls_shell.number_reflns_R_work 955 _refine_ls_shell.R_factor_R_work 0.272 _refine_ls_shell.percent_reflns_obs 99.31 _refine_ls_shell.R_factor_R_free 0.287 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 51 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3OA7 _struct.title 'Structure of the C-terminal domain of Cnm67, a core component of the spindle pole body of Saccharomyces cerevisiae' _struct.pdbx_descriptor 'Head morphogenesis protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3OA7 _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text 'coiled coils, structural protein, spindle pole body' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 7 ? ASP A 20 ? LYS A 4 ASP A 17 1 ? 14 HELX_P HELX_P2 2 ALA A 24 ? GLY A 72 ? ALA A 21 GLY A 447 1 ? 49 HELX_P HELX_P3 3 ASN A 73 ? ARG A 77 ? ASN A 448 ARG A 452 5 ? 5 HELX_P HELX_P4 4 THR A 79 ? ARG A 87 ? THR A 454 ARG A 462 1 ? 9 HELX_P HELX_P5 5 SER A 91 ? MSE A 99 ? SER A 466 MSE A 474 1 ? 9 HELX_P HELX_P6 6 VAL A 100 ? ALA A 106 ? VAL A 475 ALA A 481 5 ? 7 HELX_P HELX_P7 7 ASN A 107 ? GLY A 123 ? ASN A 482 GLY A 498 1 ? 17 HELX_P HELX_P8 8 PRO A 125 ? PRO A 127 ? PRO A 500 PRO A 502 5 ? 3 HELX_P HELX_P9 9 LYS A 128 ? TYR A 142 ? LYS A 503 TYR A 517 1 ? 15 HELX_P HELX_P10 10 TYR A 142 ? TYR A 159 ? TYR A 517 TYR A 534 1 ? 18 HELX_P HELX_P11 11 ASN A 164 ? ARG A 180 ? ASN A 539 ARG A 555 1 ? 17 HELX_P HELX_P12 12 HIS A 187 ? TYR A 197 ? HIS A 562 TYR A 572 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LEU 98 C ? ? ? 1_555 A MSE 99 N ? ? A LEU 473 A MSE 474 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A MSE 99 C ? ? ? 1_555 A VAL 100 N ? ? A MSE 474 A VAL 475 1_555 ? ? ? ? ? ? ? 1.337 ? covale3 covale ? ? A ILE 145 C ? ? ? 1_555 A MSE 146 N ? ? A ILE 520 A MSE 521 1_555 ? ? ? ? ? ? ? 1.322 ? covale4 covale ? ? A MSE 146 C ? ? ? 1_555 A LEU 147 N ? ? A MSE 521 A LEU 522 1_555 ? ? ? ? ? ? ? 1.322 ? covale5 covale ? ? A GLU 162 C ? ? ? 1_555 A MSE 163 N ? ? A GLU 537 A MSE 538 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? A MSE 163 C ? ? ? 1_555 A ASN 164 N ? ? A MSE 538 A ASN 539 1_555 ? ? ? ? ? ? ? 1.330 ? covale7 covale ? ? A PHE 176 C ? ? ? 1_555 A MSE 177 N ? ? A PHE 551 A MSE 552 1_555 ? ? ? ? ? ? ? 1.326 ? covale8 covale ? ? A MSE 177 C ? ? ? 1_555 A SER 178 N ? ? A MSE 552 A SER 553 1_555 ? ? ? ? ? ? ? 1.345 ? covale9 covale ? ? A ARG 181 C ? ? ? 1_555 A MSE 182 N ? ? A ARG 556 A MSE 557 1_555 ? ? ? ? ? ? ? 1.326 ? covale10 covale ? ? A MSE 182 C ? ? ? 1_555 A ASP 183 N ? ? A MSE 557 A ASP 558 1_555 ? ? ? ? ? ? ? 1.330 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 3OA7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3OA7 _atom_sites.fract_transf_matrix[1][1] 0.017018 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005036 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018786 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 ? ? ? A . n A 1 2 GLY 2 -1 ? ? ? A . n A 1 3 SER 3 0 ? ? ? A . n A 1 4 GLY 4 1 1 GLY GLY A . n A 1 5 PRO 5 2 2 PRO PRO A . n A 1 6 LEU 6 3 3 LEU LEU A . n A 1 7 LYS 7 4 4 LYS LYS A . n A 1 8 PRO 8 5 5 PRO PRO A . n A 1 9 GLU 9 6 6 GLU GLU A . n A 1 10 GLU 10 7 7 GLU GLU A . n A 1 11 HIS 11 8 8 HIS HIS A . n A 1 12 GLU 12 9 9 GLU GLU A . n A 1 13 ASP 13 10 10 ASP ASP A . n A 1 14 ILE 14 11 11 ILE ILE A . n A 1 15 LEU 15 12 12 LEU LEU A . n A 1 16 ASN 16 13 13 ASN ASN A . n A 1 17 LYS 17 14 14 LYS LYS A . n A 1 18 LEU 18 15 15 LEU LEU A . n A 1 19 LEU 19 16 16 LEU LEU A . n A 1 20 ASP 20 17 17 ASP ASP A . n A 1 21 PRO 21 18 18 PRO PRO A . n A 1 22 GLU 22 19 19 GLU GLU A . n A 1 23 LEU 23 20 20 LEU LEU A . n A 1 24 ALA 24 21 21 ALA ALA A . n A 1 25 GLN 25 22 22 GLN GLN A . n A 1 26 SER 26 23 23 SER SER A . n A 1 27 GLU 27 24 24 GLU GLU A . n A 1 28 ARG 28 25 25 ARG ARG A . n A 1 29 THR 29 26 26 THR THR A . n A 1 30 GLU 30 27 27 GLU GLU A . n A 1 31 ALA 31 28 28 ALA ALA A . n A 1 32 LEU 32 29 29 LEU LEU A . n A 1 33 GLN 33 30 30 GLN GLN A . n A 1 34 GLN 34 31 31 GLN GLN A . n A 1 35 LEU 35 32 32 LEU LEU A . n A 1 36 ARG 36 33 33 ARG ARG A . n A 1 37 VAL 37 34 34 VAL VAL A . n A 1 38 ASN 38 35 35 ASN ASN A . n A 1 39 TYR 39 36 36 TYR TYR A . n A 1 40 GLY 40 37 37 GLY GLY A . n A 1 41 SER 41 38 38 SER SER A . n A 1 42 PHE 42 39 39 PHE PHE A . n A 1 43 VAL 43 40 40 VAL VAL A . n A 1 44 SER 44 41 41 SER SER A . n A 1 45 GLU 45 42 42 GLU GLU A . n A 1 46 TYR 46 43 43 TYR TYR A . n A 1 47 ASN 47 44 44 ASN ASN A . n A 1 48 ASP 48 45 45 ASP ASP A . n A 1 49 LEU 49 46 46 LEU LEU A . n A 1 50 THR 50 47 47 THR THR A . n A 1 51 LYS 51 48 48 LYS LYS A . n A 1 52 SER 52 49 49 SER SER A . n A 1 53 HIS 53 50 50 HIS HIS A . n A 1 54 ASN 54 429 429 ASN ASN A . n A 1 55 THR 55 430 430 THR THR A . n A 1 56 LEU 56 431 431 LEU LEU A . n A 1 57 SER 57 432 432 SER SER A . n A 1 58 LYS 58 433 433 LYS LYS A . n A 1 59 GLU 59 434 434 GLU GLU A . n A 1 60 LEU 60 435 435 LEU LEU A . n A 1 61 ASP 61 436 436 ASP ASP A . n A 1 62 ASN 62 437 437 ASN ASN A . n A 1 63 LEU 63 438 438 LEU LEU A . n A 1 64 ARG 64 439 439 ARG ARG A . n A 1 65 SER 65 440 440 SER SER A . n A 1 66 ARG 66 441 441 ARG ARG A . n A 1 67 PHE 67 442 442 PHE PHE A . n A 1 68 GLY 68 443 443 GLY GLY A . n A 1 69 ASN 69 444 444 ASN ASN A . n A 1 70 LEU 70 445 445 LEU LEU A . n A 1 71 GLU 71 446 446 GLU GLU A . n A 1 72 GLY 72 447 447 GLY GLY A . n A 1 73 ASN 73 448 448 ASN ASN A . n A 1 74 THR 74 449 449 THR THR A . n A 1 75 SER 75 450 450 SER SER A . n A 1 76 GLU 76 451 451 GLU GLU A . n A 1 77 ARG 77 452 452 ARG ARG A . n A 1 78 ILE 78 453 453 ILE ILE A . n A 1 79 THR 79 454 454 THR THR A . n A 1 80 ILE 80 455 455 ILE ILE A . n A 1 81 LYS 81 456 456 LYS LYS A . n A 1 82 ASN 82 457 457 ASN ASN A . n A 1 83 ILE 83 458 458 ILE ILE A . n A 1 84 LEU 84 459 459 LEU LEU A . n A 1 85 GLN 85 460 460 GLN GLN A . n A 1 86 SER 86 461 461 SER SER A . n A 1 87 ARG 87 462 462 ARG ARG A . n A 1 88 PRO 88 463 463 PRO PRO A . n A 1 89 ASP 89 464 464 ASP ASP A . n A 1 90 ILE 90 465 465 ILE ILE A . n A 1 91 SER 91 466 466 SER SER A . n A 1 92 ALA 92 467 467 ALA ALA A . n A 1 93 GLU 93 468 468 GLU GLU A . n A 1 94 GLU 94 469 469 GLU GLU A . n A 1 95 CYS 95 470 470 CYS CYS A . n A 1 96 ASN 96 471 471 ASN ASN A . n A 1 97 PHE 97 472 472 PHE PHE A . n A 1 98 LEU 98 473 473 LEU LEU A . n A 1 99 MSE 99 474 474 MSE MSE A . n A 1 100 VAL 100 475 475 VAL VAL A . n A 1 101 GLU 101 476 476 GLU GLU A . n A 1 102 GLN 102 477 477 GLN GLN A . n A 1 103 ILE 103 478 478 ILE ILE A . n A 1 104 ASP 104 479 479 ASP ASP A . n A 1 105 SER 105 480 480 SER SER A . n A 1 106 ALA 106 481 481 ALA ALA A . n A 1 107 ASN 107 482 482 ASN ASN A . n A 1 108 LEU 108 483 483 LEU LEU A . n A 1 109 THR 109 484 484 THR THR A . n A 1 110 THR 110 485 485 THR THR A . n A 1 111 LEU 111 486 486 LEU LEU A . n A 1 112 GLN 112 487 487 GLN GLN A . n A 1 113 ASN 113 488 488 ASN ASN A . n A 1 114 THR 114 489 489 THR THR A . n A 1 115 VAL 115 490 490 VAL VAL A . n A 1 116 LYS 116 491 491 LYS LYS A . n A 1 117 GLU 117 492 492 GLU GLU A . n A 1 118 ILE 118 493 493 ILE ILE A . n A 1 119 VAL 119 494 494 VAL VAL A . n A 1 120 LEU 120 495 495 LEU LEU A . n A 1 121 ALA 121 496 496 ALA ALA A . n A 1 122 VAL 122 497 497 VAL VAL A . n A 1 123 GLY 123 498 498 GLY GLY A . n A 1 124 ILE 124 499 499 ILE ILE A . n A 1 125 PRO 125 500 500 PRO PRO A . n A 1 126 TYR 126 501 501 TYR TYR A . n A 1 127 PRO 127 502 502 PRO PRO A . n A 1 128 LYS 128 503 503 LYS LYS A . n A 1 129 LEU 129 504 504 LEU LEU A . n A 1 130 ARG 130 505 505 ARG ARG A . n A 1 131 ARG 131 506 506 ARG ARG A . n A 1 132 LYS 132 507 507 LYS LYS A . n A 1 133 ILE 133 508 508 ILE ILE A . n A 1 134 PRO 134 509 509 PRO PRO A . n A 1 135 LEU 135 510 510 LEU LEU A . n A 1 136 LEU 136 511 511 LEU LEU A . n A 1 137 ALA 137 512 512 ALA ALA A . n A 1 138 ILE 138 513 513 ILE ILE A . n A 1 139 LYS 139 514 514 LYS LYS A . n A 1 140 LEU 140 515 515 LEU LEU A . n A 1 141 LYS 141 516 516 LYS LYS A . n A 1 142 TYR 142 517 517 TYR TYR A . n A 1 143 GLU 143 518 518 GLU GLU A . n A 1 144 ASN 144 519 519 ASN ASN A . n A 1 145 ILE 145 520 520 ILE ILE A . n A 1 146 MSE 146 521 521 MSE MSE A . n A 1 147 LEU 147 522 522 LEU LEU A . n A 1 148 SER 148 523 523 SER SER A . n A 1 149 ASN 149 524 524 ASN ASN A . n A 1 150 PHE 150 525 525 PHE PHE A . n A 1 151 ALA 151 526 526 ALA ALA A . n A 1 152 GLN 152 527 527 GLN GLN A . n A 1 153 ARG 153 528 528 ARG ARG A . n A 1 154 LEU 154 529 529 LEU LEU A . n A 1 155 HIS 155 530 530 HIS HIS A . n A 1 156 ARG 156 531 531 ARG ARG A . n A 1 157 GLN 157 532 532 GLN GLN A . n A 1 158 VAL 158 533 533 VAL VAL A . n A 1 159 TYR 159 534 534 TYR TYR A . n A 1 160 SER 160 535 ? ? ? A . n A 1 161 GLN 161 536 ? ? ? A . n A 1 162 GLU 162 537 537 GLU GLU A . n A 1 163 MSE 163 538 538 MSE MSE A . n A 1 164 ASN 164 539 539 ASN ASN A . n A 1 165 LEU 165 540 540 LEU LEU A . n A 1 166 LYS 166 541 541 LYS LYS A . n A 1 167 LYS 167 542 542 LYS LYS A . n A 1 168 PHE 168 543 543 PHE PHE A . n A 1 169 THR 169 544 544 THR THR A . n A 1 170 ASP 170 545 545 ASP ASP A . n A 1 171 GLN 171 546 546 GLN GLN A . n A 1 172 ALA 172 547 547 ALA ALA A . n A 1 173 TYR 173 548 548 TYR TYR A . n A 1 174 TYR 174 549 549 TYR TYR A . n A 1 175 ASP 175 550 550 ASP ASP A . n A 1 176 PHE 176 551 551 PHE PHE A . n A 1 177 MSE 177 552 552 MSE MSE A . n A 1 178 SER 178 553 553 SER SER A . n A 1 179 THR 179 554 554 THR THR A . n A 1 180 ARG 180 555 555 ARG ARG A . n A 1 181 ARG 181 556 556 ARG ARG A . n A 1 182 MSE 182 557 557 MSE MSE A . n A 1 183 ASP 183 558 558 ASP ASP A . n A 1 184 SER 184 559 559 SER SER A . n A 1 185 ILE 185 560 560 ILE ILE A . n A 1 186 ASP 186 561 561 ASP ASP A . n A 1 187 HIS 187 562 562 HIS HIS A . n A 1 188 HIS 188 563 563 HIS HIS A . n A 1 189 LEU 189 564 564 LEU LEU A . n A 1 190 GLU 190 565 565 GLU GLU A . n A 1 191 ARG 191 566 566 ARG ARG A . n A 1 192 CYS 192 567 567 CYS CYS A . n A 1 193 LEU 193 568 568 LEU LEU A . n A 1 194 ASP 194 569 569 ASP ASP A . n A 1 195 HIS 195 570 570 HIS HIS A . n A 1 196 LEU 196 571 571 LEU LEU A . n A 1 197 TYR 197 572 572 TYR TYR A . n A 1 198 ASP 198 573 573 ASP ASP A . n A 1 199 HIS 199 574 ? ? ? A . n A 1 200 ILE 200 575 ? ? ? A . n A 1 201 LEU 201 576 ? ? ? A . n A 1 202 GLU 202 577 ? ? ? A . n A 1 203 LYS 203 578 ? ? ? A . n A 1 204 MSE 204 579 ? ? ? A . n A 1 205 VAL 205 580 ? ? ? A . n A 1 206 LYS 206 581 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 582 1 HOH HOH A . B 2 HOH 2 583 2 HOH HOH A . B 2 HOH 3 584 3 HOH HOH A . B 2 HOH 4 585 4 HOH HOH A . B 2 HOH 5 586 5 HOH HOH A . B 2 HOH 6 587 6 HOH HOH A . B 2 HOH 7 588 7 HOH HOH A . B 2 HOH 8 589 8 HOH HOH A . B 2 HOH 9 590 9 HOH HOH A . B 2 HOH 10 591 10 HOH HOH A . B 2 HOH 11 592 11 HOH HOH A . B 2 HOH 12 593 12 HOH HOH A . B 2 HOH 13 594 14 HOH HOH A . B 2 HOH 14 595 15 HOH HOH A . B 2 HOH 15 596 16 HOH HOH A . B 2 HOH 16 597 17 HOH HOH A . B 2 HOH 17 598 18 HOH HOH A . B 2 HOH 18 599 19 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 99 A MSE 474 ? MET SELENOMETHIONINE 2 A MSE 146 A MSE 521 ? MET SELENOMETHIONINE 3 A MSE 163 A MSE 538 ? MET SELENOMETHIONINE 4 A MSE 177 A MSE 552 ? MET SELENOMETHIONINE 5 A MSE 182 A MSE 557 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 12310 ? 1 MORE -100 ? 1 'SSA (A^2)' 21310 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 58.7600000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 26.6160000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 585 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-03-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2016-06-22 4 'Structure model' 1 3 2017-08-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 4 'Structure model' 'Source and taxonomy' 5 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' audit_author 2 4 'Structure model' entity_src_gen 3 4 'Structure model' software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_audit_author.name' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 27.0940 72.8340 16.6020 0.1474 0.2837 0.2112 0.0493 0.0541 -0.0220 2.9674 13.2604 4.6061 0.1714 0.7645 -3.9445 -0.1900 -0.6100 0.2372 0.3903 0.1918 0.3283 -0.0583 -0.1271 -0.0018 'X-RAY DIFFRACTION' 2 ? refined 30.3940 145.2880 15.3650 0.0555 0.2361 0.0515 0.0082 -0.0212 0.0099 1.7156 1.5226 2.7788 -0.0161 -1.2500 0.7765 0.2716 -0.0396 -0.0023 0.0051 -0.0431 0.0244 -0.0608 0.0449 -0.2286 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 50 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 429 ? ? A 432 ? ? ? ? 'X-RAY DIFFRACTION' 3 2 A 433 ? ? A 573 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SOLVE phasing . ? 1 REFMAC refinement 5.5.0088 ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 545 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 593 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OH _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 TYR _pdbx_validate_symm_contact.auth_seq_id_1 517 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 MSE _pdbx_validate_symm_contact.auth_seq_id_2 557 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_655 _pdbx_validate_symm_contact.dist 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 17 ? ? -38.84 124.16 2 1 TYR A 517 ? ? -114.05 -70.01 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? A GLY 1 2 1 Y 1 A GLY -1 ? A GLY 2 3 1 Y 1 A SER 0 ? A SER 3 4 1 Y 1 A SER 535 ? A SER 160 5 1 Y 1 A GLN 536 ? A GLN 161 6 1 Y 1 A HIS 574 ? A HIS 199 7 1 Y 1 A ILE 575 ? A ILE 200 8 1 Y 1 A LEU 576 ? A LEU 201 9 1 Y 1 A GLU 577 ? A GLU 202 10 1 Y 1 A LYS 578 ? A LYS 203 11 1 Y 1 A MSE 579 ? A MSE 204 12 1 Y 1 A VAL 580 ? A VAL 205 13 1 Y 1 A LYS 581 ? A LYS 206 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #