HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 05-AUG-10 3OAJ TITLE CRYSTAL STRUCTURE OF PUTATIVE DIOXYGENASE FROM BACILLUS SUBTILIS TITLE 2 SUBSP. SUBTILIS STR. 168 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE RING-CLEAVING DIOXYGENASE MHQO; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.13.11.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: BSU05490, CAB12356.1, MHQO, YDFO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, KEYWDS 2 UNKNOWN FUNCTION, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, KEYWDS 3 NYSGRC EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.TORO,R.SEIDEL,S.GARRETT,R.FOTI,S.C.ALMO,NEW YORK AUTHOR 2 STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 4 06-SEP-23 3OAJ 1 REMARK LINK REVDAT 3 16-MAR-11 3OAJ 1 REMARK REVDAT 2 12-JAN-11 3OAJ 1 KEYWDS REMARK REVDAT 1 18-AUG-10 3OAJ 0 JRNL AUTH V.N.MALASHKEVICH,R.TORO,R.SEIDEL,S.GARRETT,R.FOTI,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE DIOXYGENASE FROM BACILLUS JRNL TITL 2 SUBTILIS SUBSP. SUBTILIS STR. 168 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 111391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5602 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6758 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.3360 REMARK 3 BIN FREE R VALUE SET COUNT : 345 REMARK 3 BIN FREE R VALUE : 0.4170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4926 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 695 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.829 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5136 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6982 ; 1.263 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 638 ; 6.422 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 272 ;32.220 ;24.228 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 823 ;13.059 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;17.666 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 722 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4070 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3086 ; 1.253 ; 3.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4974 ; 2.617 ;50.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2050 ; 3.817 ;50.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1998 ; 1.634 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5136 ; 0.815 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 99999 A 99999 1 REMARK 3 1 B 99999 B 99999 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2443 ; 0.330 ; 5.000 REMARK 3 TIGHT THERMAL 1 A (A**2): 2443 ; 1.250 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 43.4045 10.5262 39.2518 REMARK 3 T TENSOR REMARK 3 T11: 0.0175 T22: 0.0224 REMARK 3 T33: 0.0082 T12: 0.0016 REMARK 3 T13: -0.0090 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.3559 L22: 0.6074 REMARK 3 L33: 0.1827 L12: 0.1207 REMARK 3 L13: -0.0981 L23: -0.1154 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: 0.0100 S13: 0.0043 REMARK 3 S21: 0.0124 S22: 0.0010 S23: 0.0383 REMARK 3 S31: -0.0146 S32: -0.0062 S33: -0.0057 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 55.8137 16.3867 3.0479 REMARK 3 T TENSOR REMARK 3 T11: 0.0294 T22: 0.0381 REMARK 3 T33: 0.0055 T12: 0.0015 REMARK 3 T13: 0.0101 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.3938 L22: 0.7010 REMARK 3 L33: 0.3046 L12: 0.1047 REMARK 3 L13: 0.1038 L23: 0.1349 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: 0.0371 S13: -0.0064 REMARK 3 S21: -0.0406 S22: 0.0208 S23: -0.0469 REMARK 3 S31: -0.0051 S32: 0.0139 S33: -0.0147 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3OAJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060871. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112088 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.69700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 1ZSW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000, 0.2 M AMMONIUM SULFATE, REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.09050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 MET A 2 REMARK 465 ASP A 313 REMARK 465 ALA A 314 REMARK 465 GLU A 315 REMARK 465 ASN A 316 REMARK 465 LEU A 317 REMARK 465 TYR A 318 REMARK 465 PHE A 319 REMARK 465 GLN A 320 REMARK 465 SER A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 TRP A 328 REMARK 465 SER A 329 REMARK 465 HIS A 330 REMARK 465 PRO A 331 REMARK 465 GLN A 332 REMARK 465 PHE A 333 REMARK 465 GLU A 334 REMARK 465 LYS A 335 REMARK 465 VAL B 1 REMARK 465 MET B 2 REMARK 465 ASP B 313 REMARK 465 ALA B 314 REMARK 465 GLU B 315 REMARK 465 ASN B 316 REMARK 465 LEU B 317 REMARK 465 TYR B 318 REMARK 465 PHE B 319 REMARK 465 GLN B 320 REMARK 465 SER B 321 REMARK 465 HIS B 322 REMARK 465 HIS B 323 REMARK 465 HIS B 324 REMARK 465 HIS B 325 REMARK 465 HIS B 326 REMARK 465 HIS B 327 REMARK 465 TRP B 328 REMARK 465 SER B 329 REMARK 465 HIS B 330 REMARK 465 PRO B 331 REMARK 465 GLN B 332 REMARK 465 PHE B 333 REMARK 465 GLU B 334 REMARK 465 LYS B 335 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 189 CD1 TYR A 189 CE1 -0.093 REMARK 500 TYR A 189 CE1 TYR A 189 CZ -0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 70 77.47 45.15 REMARK 500 ASN A 250 -52.29 77.71 REMARK 500 ASN B 250 -49.34 75.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 11 NE2 REMARK 620 2 HIS A 218 NE2 130.4 REMARK 620 3 GLU A 266 OE1 106.1 88.7 REMARK 620 4 SO4 A 501 O3 90.6 81.4 163.2 REMARK 620 5 SO4 A 501 O4 96.2 124.0 108.6 67.0 REMARK 620 6 SO4 A 501 S 107.6 93.9 132.6 35.9 35.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 11 NE2 REMARK 620 2 HIS B 218 NE2 131.7 REMARK 620 3 GLU B 266 OE1 104.9 87.4 REMARK 620 4 SO4 B 501 O4 92.4 84.5 162.1 REMARK 620 5 SO4 B 501 O3 98.6 123.9 104.1 68.0 REMARK 620 6 SO4 B 501 S 110.4 95.0 129.1 36.4 36.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-000379 RELATED DB: TARGETDB DBREF 3OAJ A 2 313 UNP P96693 MHQO_BACSU 1 312 DBREF 3OAJ B 2 313 UNP P96693 MHQO_BACSU 1 312 SEQADV 3OAJ VAL A 1 UNP P96693 EXPRESSION TAG SEQADV 3OAJ ALA A 314 UNP P96693 EXPRESSION TAG SEQADV 3OAJ GLU A 315 UNP P96693 EXPRESSION TAG SEQADV 3OAJ ASN A 316 UNP P96693 EXPRESSION TAG SEQADV 3OAJ LEU A 317 UNP P96693 EXPRESSION TAG SEQADV 3OAJ TYR A 318 UNP P96693 EXPRESSION TAG SEQADV 3OAJ PHE A 319 UNP P96693 EXPRESSION TAG SEQADV 3OAJ GLN A 320 UNP P96693 EXPRESSION TAG SEQADV 3OAJ SER A 321 UNP P96693 EXPRESSION TAG SEQADV 3OAJ HIS A 322 UNP P96693 EXPRESSION TAG SEQADV 3OAJ HIS A 323 UNP P96693 EXPRESSION TAG SEQADV 3OAJ HIS A 324 UNP P96693 EXPRESSION TAG SEQADV 3OAJ HIS A 325 UNP P96693 EXPRESSION TAG SEQADV 3OAJ HIS A 326 UNP P96693 EXPRESSION TAG SEQADV 3OAJ HIS A 327 UNP P96693 EXPRESSION TAG SEQADV 3OAJ TRP A 328 UNP P96693 EXPRESSION TAG SEQADV 3OAJ SER A 329 UNP P96693 EXPRESSION TAG SEQADV 3OAJ HIS A 330 UNP P96693 EXPRESSION TAG SEQADV 3OAJ PRO A 331 UNP P96693 EXPRESSION TAG SEQADV 3OAJ GLN A 332 UNP P96693 EXPRESSION TAG SEQADV 3OAJ PHE A 333 UNP P96693 EXPRESSION TAG SEQADV 3OAJ GLU A 334 UNP P96693 EXPRESSION TAG SEQADV 3OAJ LYS A 335 UNP P96693 EXPRESSION TAG SEQADV 3OAJ VAL B 1 UNP P96693 EXPRESSION TAG SEQADV 3OAJ ALA B 314 UNP P96693 EXPRESSION TAG SEQADV 3OAJ GLU B 315 UNP P96693 EXPRESSION TAG SEQADV 3OAJ ASN B 316 UNP P96693 EXPRESSION TAG SEQADV 3OAJ LEU B 317 UNP P96693 EXPRESSION TAG SEQADV 3OAJ TYR B 318 UNP P96693 EXPRESSION TAG SEQADV 3OAJ PHE B 319 UNP P96693 EXPRESSION TAG SEQADV 3OAJ GLN B 320 UNP P96693 EXPRESSION TAG SEQADV 3OAJ SER B 321 UNP P96693 EXPRESSION TAG SEQADV 3OAJ HIS B 322 UNP P96693 EXPRESSION TAG SEQADV 3OAJ HIS B 323 UNP P96693 EXPRESSION TAG SEQADV 3OAJ HIS B 324 UNP P96693 EXPRESSION TAG SEQADV 3OAJ HIS B 325 UNP P96693 EXPRESSION TAG SEQADV 3OAJ HIS B 326 UNP P96693 EXPRESSION TAG SEQADV 3OAJ HIS B 327 UNP P96693 EXPRESSION TAG SEQADV 3OAJ TRP B 328 UNP P96693 EXPRESSION TAG SEQADV 3OAJ SER B 329 UNP P96693 EXPRESSION TAG SEQADV 3OAJ HIS B 330 UNP P96693 EXPRESSION TAG SEQADV 3OAJ PRO B 331 UNP P96693 EXPRESSION TAG SEQADV 3OAJ GLN B 332 UNP P96693 EXPRESSION TAG SEQADV 3OAJ PHE B 333 UNP P96693 EXPRESSION TAG SEQADV 3OAJ GLU B 334 UNP P96693 EXPRESSION TAG SEQADV 3OAJ LYS B 335 UNP P96693 EXPRESSION TAG SEQRES 1 A 335 VAL MET ALA LYS LYS THR MET GLY ILE HIS HIS ILE THR SEQRES 2 A 335 ALA ILE VAL GLY HIS PRO GLN GLU ASN THR ASP PHE TYR SEQRES 3 A 335 ALA GLY VAL LEU GLY LEU ARG LEU VAL LYS GLN THR VAL SEQRES 4 A 335 ASN PHE ASP ASP PRO GLY THR TYR HIS LEU TYR PHE GLY SEQRES 5 A 335 ASN GLU GLY GLY LYS PRO GLY THR ILE ILE THR PHE PHE SEQRES 6 A 335 PRO TRP ALA GLY ALA ARG GLN GLY VAL ILE GLY ASP GLY SEQRES 7 A 335 GLN VAL GLY VAL THR SER TYR VAL VAL PRO LYS GLY ALA SEQRES 8 A 335 MET ALA PHE TRP GLU LYS ARG LEU GLU LYS PHE ASN VAL SEQRES 9 A 335 PRO TYR THR LYS ILE GLU ARG PHE GLY GLU GLN TYR VAL SEQRES 10 A 335 GLU PHE ASP ASP PRO HIS GLY LEU HIS LEU GLU ILE VAL SEQRES 11 A 335 GLU ARG GLU GLU GLY GLU ALA ASN THR TRP THR PHE GLY SEQRES 12 A 335 GLU VAL THR PRO ASP VAL ALA ILE LYS GLY PHE GLY GLY SEQRES 13 A 335 ALA THR LEU LEU SER GLU GLN PRO ASP LYS THR ALA ASP SEQRES 14 A 335 LEU LEU GLU ASN ILE MET GLY LEU GLU ARG VAL GLY LYS SEQRES 15 A 335 GLU GLY ASP PHE VAL ARG TYR ARG SER ALA GLY ASP ILE SEQRES 16 A 335 GLY ASN VAL ILE ASP LEU LYS LEU THR PRO ILE GLY ARG SEQRES 17 A 335 GLY GLN MET GLY ALA GLY THR VAL HIS HIS ILE ALA TRP SEQRES 18 A 335 ARG ALA ASN ASP ASP GLU ASP GLN LEU ASP TRP GLN ARG SEQRES 19 A 335 TYR ILE ALA SER HIS GLY TYR GLY VAL THR PRO VAL ARG SEQRES 20 A 335 ASP ARG ASN TYR PHE ASN ALA ILE TYR PHE ARG GLU HIS SEQRES 21 A 335 GLY GLU ILE LEU PHE GLU ILE ALA THR ASP PRO PRO GLY SEQRES 22 A 335 PHE ALA HIS ASP GLU THR GLN GLU THR MET GLY GLU LYS SEQRES 23 A 335 LEU MET LEU PRO VAL GLN TYR GLU PRO HIS ARG THR GLN SEQRES 24 A 335 ILE GLU GLN GLY LEU LEU PRO PHE GLU VAL ARG GLU LEU SEQRES 25 A 335 ASP ALA GLU ASN LEU TYR PHE GLN SER HIS HIS HIS HIS SEQRES 26 A 335 HIS HIS TRP SER HIS PRO GLN PHE GLU LYS SEQRES 1 B 335 VAL MET ALA LYS LYS THR MET GLY ILE HIS HIS ILE THR SEQRES 2 B 335 ALA ILE VAL GLY HIS PRO GLN GLU ASN THR ASP PHE TYR SEQRES 3 B 335 ALA GLY VAL LEU GLY LEU ARG LEU VAL LYS GLN THR VAL SEQRES 4 B 335 ASN PHE ASP ASP PRO GLY THR TYR HIS LEU TYR PHE GLY SEQRES 5 B 335 ASN GLU GLY GLY LYS PRO GLY THR ILE ILE THR PHE PHE SEQRES 6 B 335 PRO TRP ALA GLY ALA ARG GLN GLY VAL ILE GLY ASP GLY SEQRES 7 B 335 GLN VAL GLY VAL THR SER TYR VAL VAL PRO LYS GLY ALA SEQRES 8 B 335 MET ALA PHE TRP GLU LYS ARG LEU GLU LYS PHE ASN VAL SEQRES 9 B 335 PRO TYR THR LYS ILE GLU ARG PHE GLY GLU GLN TYR VAL SEQRES 10 B 335 GLU PHE ASP ASP PRO HIS GLY LEU HIS LEU GLU ILE VAL SEQRES 11 B 335 GLU ARG GLU GLU GLY GLU ALA ASN THR TRP THR PHE GLY SEQRES 12 B 335 GLU VAL THR PRO ASP VAL ALA ILE LYS GLY PHE GLY GLY SEQRES 13 B 335 ALA THR LEU LEU SER GLU GLN PRO ASP LYS THR ALA ASP SEQRES 14 B 335 LEU LEU GLU ASN ILE MET GLY LEU GLU ARG VAL GLY LYS SEQRES 15 B 335 GLU GLY ASP PHE VAL ARG TYR ARG SER ALA GLY ASP ILE SEQRES 16 B 335 GLY ASN VAL ILE ASP LEU LYS LEU THR PRO ILE GLY ARG SEQRES 17 B 335 GLY GLN MET GLY ALA GLY THR VAL HIS HIS ILE ALA TRP SEQRES 18 B 335 ARG ALA ASN ASP ASP GLU ASP GLN LEU ASP TRP GLN ARG SEQRES 19 B 335 TYR ILE ALA SER HIS GLY TYR GLY VAL THR PRO VAL ARG SEQRES 20 B 335 ASP ARG ASN TYR PHE ASN ALA ILE TYR PHE ARG GLU HIS SEQRES 21 B 335 GLY GLU ILE LEU PHE GLU ILE ALA THR ASP PRO PRO GLY SEQRES 22 B 335 PHE ALA HIS ASP GLU THR GLN GLU THR MET GLY GLU LYS SEQRES 23 B 335 LEU MET LEU PRO VAL GLN TYR GLU PRO HIS ARG THR GLN SEQRES 24 B 335 ILE GLU GLN GLY LEU LEU PRO PHE GLU VAL ARG GLU LEU SEQRES 25 B 335 ASP ALA GLU ASN LEU TYR PHE GLN SER HIS HIS HIS HIS SEQRES 26 B 335 HIS HIS TRP SER HIS PRO GLN PHE GLU LYS HET ZN A 500 1 HET SO4 A 501 5 HET ZN B 500 1 HET SO4 B 501 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *695(H2 O) HELIX 1 1 HIS A 18 ALA A 27 1 10 HELIX 2 2 ALA A 91 PHE A 102 1 12 HELIX 3 3 GLN A 163 ILE A 174 1 12 HELIX 4 4 ASP A 225 HIS A 239 1 15 HELIX 5 5 PRO A 290 PRO A 295 5 6 HELIX 6 6 HIS A 296 LEU A 304 1 9 HELIX 7 7 HIS B 18 ALA B 27 1 10 HELIX 8 8 ALA B 91 PHE B 102 1 12 HELIX 9 9 GLN B 163 ILE B 174 1 12 HELIX 10 10 ASP B 225 HIS B 239 1 15 HELIX 11 11 PRO B 290 PRO B 295 5 6 HELIX 12 12 HIS B 296 GLY B 303 1 8 SHEET 1 A 8 ARG A 33 VAL A 39 0 SHEET 2 A 8 TYR A 47 GLY A 52 -1 O GLY A 52 N ARG A 33 SHEET 3 A 8 ILE A 61 PRO A 66 -1 O ILE A 62 N PHE A 51 SHEET 4 A 8 ILE A 9 VAL A 16 1 N ILE A 12 O THR A 63 SHEET 5 A 8 THR A 215 ALA A 223 -1 O ALA A 220 N HIS A 10 SHEET 6 A 8 LEU A 264 THR A 269 1 O GLU A 266 N TRP A 221 SHEET 7 A 8 ASN A 253 ARG A 258 -1 N PHE A 257 O PHE A 265 SHEET 8 A 8 ARG A 247 ASP A 248 -1 N ARG A 247 O ALA A 254 SHEET 1 B 8 THR A 107 ARG A 111 0 SHEET 2 B 8 GLU A 114 ASP A 120 -1 O TYR A 116 N ILE A 109 SHEET 3 B 8 HIS A 126 GLU A 131 -1 O LEU A 127 N PHE A 119 SHEET 4 B 8 GLN A 79 VAL A 87 1 N TYR A 85 O GLU A 128 SHEET 5 B 8 GLY A 153 LEU A 160 -1 O LEU A 160 N GLN A 79 SHEET 6 B 8 VAL A 198 LYS A 202 1 O ASP A 200 N LEU A 159 SHEET 7 B 8 PHE A 186 ARG A 190 -1 N VAL A 187 O LEU A 201 SHEET 8 B 8 GLU A 178 GLU A 183 -1 N VAL A 180 O ARG A 188 SHEET 1 C 8 ARG B 33 VAL B 39 0 SHEET 2 C 8 TYR B 47 GLY B 52 -1 O GLY B 52 N ARG B 33 SHEET 3 C 8 ILE B 61 PRO B 66 -1 O ILE B 62 N PHE B 51 SHEET 4 C 8 ILE B 9 VAL B 16 1 N ILE B 12 O THR B 63 SHEET 5 C 8 THR B 215 ALA B 223 -1 O ALA B 220 N HIS B 11 SHEET 6 C 8 LEU B 264 THR B 269 1 O GLU B 266 N TRP B 221 SHEET 7 C 8 ASN B 253 ARG B 258 -1 N PHE B 257 O PHE B 265 SHEET 8 C 8 ARG B 247 ASP B 248 -1 N ARG B 247 O ALA B 254 SHEET 1 D 8 THR B 107 ARG B 111 0 SHEET 2 D 8 GLU B 114 ASP B 120 -1 O GLU B 118 N THR B 107 SHEET 3 D 8 HIS B 126 GLU B 131 -1 O LEU B 127 N PHE B 119 SHEET 4 D 8 GLN B 79 VAL B 87 1 N TYR B 85 O GLU B 128 SHEET 5 D 8 GLY B 153 LEU B 160 -1 O THR B 158 N GLY B 81 SHEET 6 D 8 VAL B 198 LYS B 202 1 O ASP B 200 N LEU B 159 SHEET 7 D 8 PHE B 186 ARG B 190 -1 N TYR B 189 O ILE B 199 SHEET 8 D 8 GLU B 178 GLU B 183 -1 N VAL B 180 O ARG B 188 LINK NE2 HIS A 11 ZN ZN A 500 1555 1555 2.10 LINK NE2 HIS A 218 ZN ZN A 500 1555 1555 2.29 LINK OE1 GLU A 266 ZN ZN A 500 1555 1555 1.79 LINK ZN ZN A 500 O3 SO4 A 501 1555 1555 2.16 LINK ZN ZN A 500 O4 SO4 A 501 1555 1555 2.19 LINK ZN ZN A 500 S SO4 A 501 1555 1555 2.49 LINK NE2 HIS B 11 ZN ZN B 500 1555 1555 2.11 LINK NE2 HIS B 218 ZN ZN B 500 1555 1555 2.29 LINK OE1 GLU B 266 ZN ZN B 500 1555 1555 1.86 LINK ZN ZN B 500 O4 SO4 B 501 1555 1555 2.16 LINK ZN ZN B 500 O3 SO4 B 501 1555 1555 2.16 LINK ZN ZN B 500 S SO4 B 501 1555 1555 2.46 CISPEP 1 PRO A 271 PRO A 272 0 1.35 CISPEP 2 PRO B 271 PRO B 272 0 0.88 SITE 1 AC1 4 HIS A 11 HIS A 218 GLU A 266 SO4 A 501 SITE 1 AC2 11 HIS A 11 THR A 13 HIS A 48 TYR A 50 SITE 2 AC2 11 HIS A 218 PHE A 252 TYR A 256 GLU A 266 SITE 3 AC2 11 ZN A 500 HOH A 592 HOH A 678 SITE 1 AC3 5 HIS B 11 THR B 13 HIS B 218 GLU B 266 SITE 2 AC3 5 SO4 B 501 SITE 1 AC4 8 HIS B 11 THR B 13 HIS B 48 HIS B 218 SITE 2 AC4 8 PHE B 252 TYR B 256 GLU B 266 ZN B 500 CRYST1 50.215 86.181 72.968 90.00 91.65 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019914 0.000000 0.000573 0.00000 SCALE2 0.000000 0.011603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013710 0.00000