HEADER HYDROLASE 06-AUG-10 3OBC OBSLTE 02-JUL-14 3OBC 4QGP TITLE CRYSTAL STRUCTURE OF A PYROPHOSPHATASE (AF1178) FROM ARCHAEOGLOBUS TITLE 2 FULGIDUS AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYROPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_COMMON: ARCHAEA; SOURCE 4 ORGANISM_TAXID: 2234; SOURCE 5 GENE: AF_1178; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MH4A KEYWDS DIMERIC FOUR ALPHA-HELICAL BUNDLE, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 02-JUL-14 3OBC 1 OBSLTE REVDAT 2 20-JUL-11 3OBC 1 KEYWDS REVDAT 1 08-SEP-10 3OBC 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PYROPHOSPHATASE (AF1178) FROM JRNL TITL 2 ARCHAEOGLOBUS FULGIDUS AT 1.80 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 24325 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1241 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.88 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2899 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2127 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2756 REMARK 3 BIN R VALUE (WORKING SET) : 0.2119 REMARK 3 BIN FREE R VALUE : 0.2288 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.93 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 143 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1768 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.66810 REMARK 3 B22 (A**2) : -2.56030 REMARK 3 B33 (A**2) : -2.10780 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.898 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1920 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2610 ; 6.000 ; HARMONIC REMARK 3 TORSION ANGLES : 728 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 51 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 289 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1920 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 250 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2315 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.50 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.98 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.14 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 5.2623 7.7247 13.1690 REMARK 3 T TENSOR REMARK 3 T11: -0.0426 T22: -0.0430 REMARK 3 T33: -0.0564 T12: -0.0059 REMARK 3 T13: 0.0049 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 1.0615 L22: 0.6257 REMARK 3 L33: 0.5918 L12: 0.1974 REMARK 3 L13: -0.1772 L23: -0.1919 REMARK 3 S TENSOR REMARK 3 S11: -0.0134 S12: -0.0017 S13: 0.0642 REMARK 3 S21: -0.0663 S22: 0.0378 S23: 0.0552 REMARK 3 S31: -0.0506 S32: -0.0418 S33: -0.0245 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 6.6771 10.9192 16.4391 REMARK 3 T TENSOR REMARK 3 T11: -0.0436 T22: -0.0286 REMARK 3 T33: -0.0385 T12: -0.0002 REMARK 3 T13: -0.0053 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 0.9597 L22: 0.3392 REMARK 3 L33: 0.6475 L12: 0.0051 REMARK 3 L13: -0.0953 L23: -0.0045 REMARK 3 S TENSOR REMARK 3 S11: -0.0116 S12: 0.0741 S13: -0.0293 REMARK 3 S21: -0.0253 S22: 0.0470 S23: -0.0023 REMARK 3 S31: -0.0668 S32: -0.0360 S33: -0.0355 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ZINC (ZN) FROM THE CRYSTALLIZATION HAS BEEN REMARK 3 MODELED INTO THE STRUCTURE WITH THE MODELING SUPPORTED BY REMARK 3 ANOMALOUS DIFFERENCE FOURIER MAPS AND X-RAY FLUORESCENCE REMARK 3 MEASUREMENTS 3. POLYETHYLENE GLYCOL 200 FRAGMENTS (PEG AND PGE) REMARK 3 FROM THE CRYSTALLIZATION/CRYO CONDITIONS ARE MODELED INTO THE REMARK 3 STRUCTURE. 4. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 5. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR REMARK 3 RESTRAINT REPRESENTATION (-AUTONCS). REMARK 4 REMARK 4 3OBC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-10. REMARK 100 THE RCSB ID CODE IS RCSB060900. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97954 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24327 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 28.202 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.60500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 63.0000% POLYETHYLENE GLYCOL 200, REMARK 280 0.2000M MAGNESIUM CHLORIDE, 0.1M SODIUM CACODYLATE PH 6.0, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.58400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.64250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.06800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.64250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.58400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.06800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.58400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.06800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.64250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.06800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.58400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.64250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING SUGGESTS THE ASSIGNMENT OF A DIMER AND REMARK 300 TETRAMER AS OLIGOMERIC STATES. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -286.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 51.64250 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -136.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 ASN A 101 REMARK 465 ARG A 102 REMARK 465 VAL A 103 REMARK 465 HIS A 104 REMARK 465 GLU A 105 REMARK 465 PHE A 106 REMARK 465 MSE B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ASN B 101 REMARK 465 ARG B 102 REMARK 465 VAL B 103 REMARK 465 HIS B 104 REMARK 465 GLU B 105 REMARK 465 PHE B 106 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A -7 CG CD CE NZ REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 GLU A 62 CD OE1 OE2 REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 ARG A 89 NE CZ NH1 NH2 REMARK 470 GLU A 95 CD OE1 OE2 REMARK 470 ARG A 96 NE CZ NH1 NH2 REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 TYR A 98 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE B -6 CG1 CG2 CD1 REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 ARG B 56 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 88 CE NZ REMARK 470 LYS B 97 CG CD CE NZ REMARK 470 TYR B 98 CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 98 75.19 -118.05 REMARK 500 HIS B -1 77.30 -110.55 REMARK 500 TYR B 98 75.44 -117.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 108 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 33 OE1 REMARK 620 2 ASP B 67 OD2 94.3 REMARK 620 3 GLU B 64 OE1 92.9 90.2 REMARK 620 4 GLU B 36 OE1 88.5 177.0 88.7 REMARK 620 5 HOH B 120 O 88.7 91.2 177.8 89.9 REMARK 620 6 HOH B 116 O 174.6 87.5 92.2 89.8 86.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 107 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 67 OD2 REMARK 620 2 GLU A 33 OE1 93.2 REMARK 620 3 GLU A 64 OE1 91.7 92.3 REMARK 620 4 GLU A 36 OE1 178.3 87.7 89.7 REMARK 620 5 HOH A 113 O 87.2 171.2 96.4 91.7 REMARK 620 6 HOH A 119 O 92.1 88.8 175.9 86.4 82.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 110 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 356701 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 1-106) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHH. DBREF 3OBC A 1 106 UNP O29089 O29089_ARCFU 1 106 DBREF 3OBC B 1 106 UNP O29089 O29089_ARCFU 1 106 SEQADV 3OBC MSE A -11 UNP O29089 EXPRESSION TAG SEQADV 3OBC GLY A -10 UNP O29089 EXPRESSION TAG SEQADV 3OBC SER A -9 UNP O29089 EXPRESSION TAG SEQADV 3OBC ASP A -8 UNP O29089 EXPRESSION TAG SEQADV 3OBC LYS A -7 UNP O29089 EXPRESSION TAG SEQADV 3OBC ILE A -6 UNP O29089 EXPRESSION TAG SEQADV 3OBC HIS A -5 UNP O29089 EXPRESSION TAG SEQADV 3OBC HIS A -4 UNP O29089 EXPRESSION TAG SEQADV 3OBC HIS A -3 UNP O29089 EXPRESSION TAG SEQADV 3OBC HIS A -2 UNP O29089 EXPRESSION TAG SEQADV 3OBC HIS A -1 UNP O29089 EXPRESSION TAG SEQADV 3OBC HIS A 0 UNP O29089 EXPRESSION TAG SEQADV 3OBC MSE B -11 UNP O29089 EXPRESSION TAG SEQADV 3OBC GLY B -10 UNP O29089 EXPRESSION TAG SEQADV 3OBC SER B -9 UNP O29089 EXPRESSION TAG SEQADV 3OBC ASP B -8 UNP O29089 EXPRESSION TAG SEQADV 3OBC LYS B -7 UNP O29089 EXPRESSION TAG SEQADV 3OBC ILE B -6 UNP O29089 EXPRESSION TAG SEQADV 3OBC HIS B -5 UNP O29089 EXPRESSION TAG SEQADV 3OBC HIS B -4 UNP O29089 EXPRESSION TAG SEQADV 3OBC HIS B -3 UNP O29089 EXPRESSION TAG SEQADV 3OBC HIS B -2 UNP O29089 EXPRESSION TAG SEQADV 3OBC HIS B -1 UNP O29089 EXPRESSION TAG SEQADV 3OBC HIS B 0 UNP O29089 EXPRESSION TAG SEQRES 1 A 118 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 118 GLU GLU LEU LEU ASP ILE LEU ARG GLU PHE ARG ASP SER SEQRES 3 A 118 ARG GLY TRP LEU LYS TYR HIS THR PRO LYS ASN LEU ALA SEQRES 4 A 118 VAL SER ILE SER ILE GLU VAL ALA GLU LEU LEU GLU ILE SEQRES 5 A 118 PHE GLN TRP THR ARG SER SER ASP GLU GLU PHE GLU VAL SEQRES 6 A 118 LEU GLU ARG ARG LYS GLY GLU VAL GLU GLU GLU ILE ALA SEQRES 7 A 118 ASP VAL LEU ILE TYR LEU LEU PHE LEU CYS ASP VAL ALA SEQRES 8 A 118 GLU ILE ASN PRO ILE GLU ALA VAL LYS ARG LYS MSE GLU SEQRES 9 A 118 LYS ASN GLU ARG LYS TYR PRO LYS ASN ARG VAL HIS GLU SEQRES 10 A 118 PHE SEQRES 1 B 118 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 B 118 GLU GLU LEU LEU ASP ILE LEU ARG GLU PHE ARG ASP SER SEQRES 3 B 118 ARG GLY TRP LEU LYS TYR HIS THR PRO LYS ASN LEU ALA SEQRES 4 B 118 VAL SER ILE SER ILE GLU VAL ALA GLU LEU LEU GLU ILE SEQRES 5 B 118 PHE GLN TRP THR ARG SER SER ASP GLU GLU PHE GLU VAL SEQRES 6 B 118 LEU GLU ARG ARG LYS GLY GLU VAL GLU GLU GLU ILE ALA SEQRES 7 B 118 ASP VAL LEU ILE TYR LEU LEU PHE LEU CYS ASP VAL ALA SEQRES 8 B 118 GLU ILE ASN PRO ILE GLU ALA VAL LYS ARG LYS MSE GLU SEQRES 9 B 118 LYS ASN GLU ARG LYS TYR PRO LYS ASN ARG VAL HIS GLU SEQRES 10 B 118 PHE MODRES 3OBC MSE A 1 MET SELENOMETHIONINE MODRES 3OBC MSE A 91 MET SELENOMETHIONINE MODRES 3OBC MSE B 1 MET SELENOMETHIONINE MODRES 3OBC MSE B 91 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 91 8 HET MSE B 1 8 HET MSE B 91 16 HET ZN A 107 1 HET CL A 111 1 HET ZN B 108 1 HET PGE B 109 10 HET PEG B 110 7 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CL CL 1- FORMUL 6 PGE C6 H14 O4 FORMUL 7 PEG C4 H10 O3 FORMUL 8 HOH *85(H2 O) HELIX 1 1 HIS A 0 ARG A 15 1 16 HELIX 2 2 TRP A 17 HIS A 21 5 5 HELIX 3 3 THR A 22 PHE A 41 1 20 HELIX 4 4 SER A 46 ARG A 57 1 12 HELIX 5 5 ARG A 57 GLU A 80 1 24 HELIX 6 6 ASN A 82 TYR A 98 1 17 HELIX 7 7 HIS B -1 ARG B 15 1 17 HELIX 8 8 TRP B 17 HIS B 21 5 5 HELIX 9 9 THR B 22 PHE B 41 1 20 HELIX 10 10 SER B 46 ARG B 57 1 12 HELIX 11 11 ARG B 57 GLU B 80 1 24 HELIX 12 12 ASN B 82 TYR B 98 1 17 SHEET 1 A 2 HIS A -4 HIS A -1 0 SHEET 2 A 2 HIS B -5 HIS B -2 1 O HIS B -4 N HIS A -2 LINK C HIS A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N GLU A 2 1555 1555 1.36 LINK C LYS A 90 N MSE A 91 1555 1555 1.35 LINK C MSE A 91 N GLU A 92 1555 1555 1.34 LINK C HIS B 0 N MSE B 1 1555 1555 1.36 LINK C MSE B 1 N GLU B 2 1555 1555 1.35 LINK C LYS B 90 N AMSE B 91 1555 1555 1.36 LINK C LYS B 90 N BMSE B 91 1555 1555 1.36 LINK C AMSE B 91 N GLU B 92 1555 1555 1.35 LINK C BMSE B 91 N GLU B 92 1555 1555 1.35 LINK OE1 GLU B 33 ZN ZN B 108 1555 1555 2.05 LINK OD2 ASP B 67 ZN ZN B 108 1555 1555 2.09 LINK OD2 ASP A 67 ZN ZN A 107 1555 1555 2.09 LINK OE1 GLU A 33 ZN ZN A 107 1555 1555 2.10 LINK OE1 GLU A 64 ZN ZN A 107 1555 1555 2.12 LINK OE1 GLU B 64 ZN ZN B 108 1555 1555 2.17 LINK OE1 GLU B 36 ZN ZN B 108 1555 1555 2.25 LINK OE1 GLU A 36 ZN ZN A 107 1555 1555 2.25 LINK ZN ZN B 108 O HOH B 120 1555 1555 2.14 LINK ZN ZN A 107 O HOH A 113 1555 1555 2.20 LINK ZN ZN B 108 O HOH B 116 1555 1555 2.25 LINK ZN ZN A 107 O HOH A 119 1555 1555 2.35 SITE 1 AC1 6 GLU A 33 GLU A 36 GLU A 64 ASP A 67 SITE 2 AC1 6 HOH A 113 HOH A 119 SITE 1 AC2 6 HIS A -1 HIS A 0 MSE A 1 GLU A 2 SITE 2 AC2 6 HIS B 0 HOH B 167 SITE 1 AC3 6 GLU B 33 GLU B 36 GLU B 64 ASP B 67 SITE 2 AC3 6 HOH B 116 HOH B 120 SITE 1 AC4 7 LEU A 18 LYS A 19 HIS A 21 SER B 47 SITE 2 AC4 7 PHE B 51 HOH B 165 HOH B 183 SITE 1 AC5 3 PHE A 51 LEU B 18 LYS B 19 CRYST1 49.168 102.136 103.285 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020338 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009791 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009682 0.00000