data_3OBH # _entry.id 3OBH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3OBH RCSB RCSB060905 WWPDB D_1000060905 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id SpR104 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3OBH _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-08-06 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kuzin, A.' 1 'Abashidze, M.' 2 'Lew, S.' 3 'Seetharaman, J.' 4 'Patel, P.' 5 'Xiao, R.' 6 'Ciccosanti, C.' 7 'Lee, D.' 8 'Everett, J.K.' 9 'Nair, R.' 10 'Acton, T.B.' 11 'Rost, B.' 12 'Montelione, G.T.' 13 'Tong, L.' 14 'Hunt, J.F.' 15 'Northeast Structural Genomics Consortium (NESG)' 16 # _citation.id primary _citation.title ;X-ray crystal structure of protein SP_0782 (7-79) from Streptococcus pneumoniae. Northeast Structural Genomics Consortium Target SpR104 ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kuzin, A.' 1 primary 'Abashidze, M.' 2 primary 'Lew, S.' 3 primary 'Seetharaman, J.' 4 primary 'Patel, P.' 5 primary 'Xiao, R.' 6 primary 'Ciccosanti, C.' 7 primary 'Lee, D.' 8 primary 'Everett, J.K.' 9 primary 'Nair, R.' 10 primary 'Acton, T.B.' 11 primary 'Rost, B.' 12 primary 'Montelione, G.T.' 13 primary 'Tong, L.' 14 primary 'Hunt, J.F.' 15 # _cell.entry_id 3OBH _cell.length_a 66.388 _cell.length_b 66.388 _cell.length_c 41.952 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3OBH _symmetry.space_group_name_H-M 'P 41' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'uncharacterized protein' 9780.378 2 ? ? ? ? 2 non-polymer syn 'ACETIC ACID' 60.052 2 ? ? ? ? 3 non-polymer syn 'CITRIC ACID' 192.124 1 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 2 ? ? ? ? 5 water nat water 18.015 45 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)KK(MSE)AEFTFEIEEHLLTLSENEKGWTKEINRVSFNGAPAKFDIRAWSPDHTK(MSE)GKGITLSNEEFQT (MSE)VDAFKGNLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MKKMAEFTFEIEEHLLTLSENEKGWTKEINRVSFNGAPAKFDIRAWSPDHTKMGKGITLSNEEFQTMVDAFKGNLEHHHH HH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier SpR104 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 LYS n 1 3 LYS n 1 4 MSE n 1 5 ALA n 1 6 GLU n 1 7 PHE n 1 8 THR n 1 9 PHE n 1 10 GLU n 1 11 ILE n 1 12 GLU n 1 13 GLU n 1 14 HIS n 1 15 LEU n 1 16 LEU n 1 17 THR n 1 18 LEU n 1 19 SER n 1 20 GLU n 1 21 ASN n 1 22 GLU n 1 23 LYS n 1 24 GLY n 1 25 TRP n 1 26 THR n 1 27 LYS n 1 28 GLU n 1 29 ILE n 1 30 ASN n 1 31 ARG n 1 32 VAL n 1 33 SER n 1 34 PHE n 1 35 ASN n 1 36 GLY n 1 37 ALA n 1 38 PRO n 1 39 ALA n 1 40 LYS n 1 41 PHE n 1 42 ASP n 1 43 ILE n 1 44 ARG n 1 45 ALA n 1 46 TRP n 1 47 SER n 1 48 PRO n 1 49 ASP n 1 50 HIS n 1 51 THR n 1 52 LYS n 1 53 MSE n 1 54 GLY n 1 55 LYS n 1 56 GLY n 1 57 ILE n 1 58 THR n 1 59 LEU n 1 60 SER n 1 61 ASN n 1 62 GLU n 1 63 GLU n 1 64 PHE n 1 65 GLN n 1 66 THR n 1 67 MSE n 1 68 VAL n 1 69 ASP n 1 70 ALA n 1 71 PHE n 1 72 LYS n 1 73 GLY n 1 74 ASN n 1 75 LEU n 1 76 GLU n 1 77 HIS n 1 78 HIS n 1 79 HIS n 1 80 HIS n 1 81 HIS n 1 82 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SP_0782 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus pneumoniae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1313 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)+ Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET 21-23C' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q97RM2_STRPN _struct_ref.pdbx_db_accession Q97RM2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code KKMAEFTFEIEEHLLTLSENEKGWTKEINRVSFNGAPAKFDIRAWSPDHTKMGKGITLSNEEFQTMVDAFKGN _struct_ref.pdbx_align_begin 7 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3OBH A 2 ? 74 ? Q97RM2 7 ? 79 ? 7 79 2 1 3OBH B 2 ? 74 ? Q97RM2 7 ? 79 ? 7 79 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3OBH MSE A 1 ? UNP Q97RM2 ? ? 'expression tag' 6 1 1 3OBH LEU A 75 ? UNP Q97RM2 ? ? 'expression tag' 80 2 1 3OBH GLU A 76 ? UNP Q97RM2 ? ? 'expression tag' 81 3 1 3OBH HIS A 77 ? UNP Q97RM2 ? ? 'expression tag' 82 4 1 3OBH HIS A 78 ? UNP Q97RM2 ? ? 'expression tag' 83 5 1 3OBH HIS A 79 ? UNP Q97RM2 ? ? 'expression tag' 84 6 1 3OBH HIS A 80 ? UNP Q97RM2 ? ? 'expression tag' 85 7 1 3OBH HIS A 81 ? UNP Q97RM2 ? ? 'expression tag' 86 8 1 3OBH HIS A 82 ? UNP Q97RM2 ? ? 'expression tag' 87 9 2 3OBH MSE B 1 ? UNP Q97RM2 ? ? 'expression tag' 6 10 2 3OBH LEU B 75 ? UNP Q97RM2 ? ? 'expression tag' 80 11 2 3OBH GLU B 76 ? UNP Q97RM2 ? ? 'expression tag' 81 12 2 3OBH HIS B 77 ? UNP Q97RM2 ? ? 'expression tag' 82 13 2 3OBH HIS B 78 ? UNP Q97RM2 ? ? 'expression tag' 83 14 2 3OBH HIS B 79 ? UNP Q97RM2 ? ? 'expression tag' 84 15 2 3OBH HIS B 80 ? UNP Q97RM2 ? ? 'expression tag' 85 16 2 3OBH HIS B 81 ? UNP Q97RM2 ? ? 'expression tag' 86 17 2 3OBH HIS B 82 ? UNP Q97RM2 ? ? 'expression tag' 87 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACY non-polymer . 'ACETIC ACID' ? 'C2 H4 O2' 60.052 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CIT non-polymer . 'CITRIC ACID' ? 'C6 H8 O7' 192.124 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3OBH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_percent_sol 47.95 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 3.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;Protein solution: 100mM NaCl, 5mM DTT, 0.02% NaN3, 10mM Tris-HCl (pH 7.5). Reservoir solution:100mM Citric acid 25% PEG 3350, sitting drop, temperature 290K, VAPOR DIFFUSION, SITTING DROP ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2010-07-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979 # _reflns.entry_id 3OBH _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.88 _reflns.number_obs 13284 _reflns.number_all ? _reflns.percent_possible_obs 91.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.084 _reflns.pdbx_netI_over_sigmaI 26.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.88 _reflns_shell.d_res_low 1.95 _reflns_shell.percent_possible_all 58.5 _reflns_shell.Rmerge_I_obs 0.278 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.8 _reflns_shell.pdbx_redundancy 2.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3OBH _refine.ls_number_reflns_obs 6802 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.16 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.235 _refine.ls_d_res_high 1.891 _refine.ls_percent_reflns_obs 45.93 _refine.ls_R_factor_obs 0.1961 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1916 _refine.ls_R_factor_R_free 0.2382 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.95 _refine.ls_number_reflns_R_free 677 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.50 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 2.7084 _refine.aniso_B[2][2] 2.7084 _refine.aniso_B[3][3] -5.4168 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.447 _refine.solvent_model_param_bsol 45.845 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.95 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.28 _refine.pdbx_overall_phase_error 23.50 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_ESU_R ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1079 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 45 _refine_hist.number_atoms_total 1159 _refine_hist.d_res_high 1.891 _refine_hist.d_res_low 24.235 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 1144 'X-RAY DIFFRACTION' ? f_angle_d 1.025 ? ? 1534 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.166 ? ? 429 'X-RAY DIFFRACTION' ? f_chiral_restr 0.080 ? ? 158 'X-RAY DIFFRACTION' ? f_plane_restr 0.007 ? ? 196 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.8909 2.0369 968 0.1850 37.00 0.2802 . . 108 . . . . 'X-RAY DIFFRACTION' . 2.0369 2.2417 1192 0.1788 45.00 0.2370 . . 131 . . . . 'X-RAY DIFFRACTION' . 2.2417 2.5658 1286 0.1958 49.00 0.3009 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.5658 3.2314 1334 0.1968 50.00 0.2617 . . 148 . . . . 'X-RAY DIFFRACTION' . 3.2314 24.2366 1345 0.1915 50.00 0.2029 . . 147 . . . . # _struct.entry_id 3OBH _struct.title ;X-ray crystal structure of protein SP_0782 (7-79) from Streptococcus pneumoniae. Northeast Structural Genomics Consortium Target SpR104 ; _struct.pdbx_descriptor 'uncharacterized protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3OBH _struct_keywords.text 'Structural Genomics, PSI-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, unknown function' _struct_keywords.pdbx_keywords 'structural genomics, unknown function' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 5 ? # _struct_biol.id 1 _struct_biol.details 'dimer,21 kD,97.4%' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 60 ? LYS A 72 ? SER A 65 LYS A 77 1 ? 13 HELX_P HELX_P2 2 SER B 60 ? PHE B 71 ? SER B 65 PHE B 76 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LYS 52 C ? ? ? 1_555 A MSE 53 N ? ? A LYS 57 A MSE 58 1_555 ? ? ? ? ? ? ? 1.320 ? covale2 covale ? ? A MSE 53 C ? ? ? 1_555 A GLY 54 N ? ? A MSE 58 A GLY 59 1_555 ? ? ? ? ? ? ? 1.323 ? covale3 covale ? ? A THR 66 C ? ? ? 1_555 A MSE 67 N ? ? A THR 71 A MSE 72 1_555 ? ? ? ? ? ? ? 1.331 ? covale4 covale ? ? A MSE 67 C ? ? ? 1_555 A VAL 68 N ? ? A MSE 72 A VAL 73 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale ? ? B LYS 52 C ? ? ? 1_555 B MSE 53 N ? ? B LYS 57 B MSE 58 1_555 ? ? ? ? ? ? ? 1.325 ? covale6 covale ? ? B MSE 53 C ? ? ? 1_555 B GLY 54 N ? ? B MSE 58 B GLY 59 1_555 ? ? ? ? ? ? ? 1.328 ? covale7 covale ? ? B THR 66 C ? ? ? 1_555 B MSE 67 N A ? B THR 71 B MSE 72 1_555 ? ? ? ? ? ? ? 1.332 ? covale8 covale ? ? B THR 66 C ? ? ? 1_555 B MSE 67 N B ? B THR 71 B MSE 72 1_555 ? ? ? ? ? ? ? 1.327 ? covale9 covale ? ? B MSE 67 C A ? ? 1_555 B VAL 68 N ? ? B MSE 72 B VAL 73 1_555 ? ? ? ? ? ? ? 1.328 ? covale10 covale ? ? B MSE 67 C B ? ? 1_555 B VAL 68 N ? ? B MSE 72 B VAL 73 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 9 ? GLU A 20 ? PHE A 14 GLU A 25 A 2 THR A 26 ? PHE A 34 ? THR A 31 PHE A 39 A 3 LYS A 40 ? TRP A 46 ? LYS A 45 TRP A 51 A 4 MSE A 53 ? LEU A 59 ? MSE A 58 LEU A 64 B 1 PHE B 9 ? GLU B 20 ? PHE B 14 GLU B 25 B 2 THR B 26 ? PHE B 34 ? THR B 31 PHE B 39 B 3 LYS B 40 ? TRP B 46 ? LYS B 45 TRP B 51 B 4 MSE B 53 ? LEU B 59 ? MSE B 58 LEU B 64 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 18 ? N LEU A 23 O LYS A 27 ? O LYS A 32 A 2 3 N THR A 26 ? N THR A 31 O TRP A 46 ? O TRP A 51 A 3 4 N ALA A 45 ? N ALA A 50 O GLY A 54 ? O GLY A 59 B 1 2 N LEU B 18 ? N LEU B 23 O LYS B 27 ? O LYS B 32 B 2 3 N VAL B 32 ? N VAL B 37 O LYS B 40 ? O LYS B 45 B 3 4 N ALA B 45 ? N ALA B 50 O GLY B 54 ? O GLY B 59 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE ACY A 103' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CIT A 201' AC3 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE ACY B 102' AC4 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE PEG B 1' AC5 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE PEG B 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 HOH H . ? HOH A 5 . ? 4_554 ? 2 AC1 2 HOH H . ? HOH A 101 . ? 1_555 ? 3 AC2 6 ASN A 21 ? ASN A 26 . ? 1_555 ? 4 AC2 6 TRP A 25 ? TRP A 30 . ? 1_555 ? 5 AC2 6 ALA A 45 ? ALA A 50 . ? 1_555 ? 6 AC2 6 GLY A 54 ? GLY A 59 . ? 1_555 ? 7 AC2 6 LYS A 55 ? LYS A 60 . ? 1_555 ? 8 AC2 6 HOH H . ? HOH A 96 . ? 1_555 ? 9 AC3 7 SER A 60 ? SER A 65 . ? 3_655 ? 10 AC3 7 GLU A 62 ? GLU A 67 . ? 3_655 ? 11 AC3 7 THR B 8 ? THR B 13 . ? 1_555 ? 12 AC3 7 SER B 19 ? SER B 24 . ? 3_655 ? 13 AC3 7 SER B 33 ? SER B 38 . ? 1_555 ? 14 AC3 7 ASN B 35 ? ASN B 40 . ? 1_555 ? 15 AC3 7 GLY B 36 ? GLY B 41 . ? 1_555 ? 16 AC4 6 LYS A 55 ? LYS A 60 . ? 1_555 ? 17 AC4 6 ARG B 44 ? ARG B 49 . ? 1_555 ? 18 AC4 6 LYS B 55 ? LYS B 60 . ? 1_555 ? 19 AC4 6 GLY B 56 ? GLY B 61 . ? 1_555 ? 20 AC4 6 ILE B 57 ? ILE B 62 . ? 1_555 ? 21 AC4 6 THR B 58 ? THR B 63 . ? 1_555 ? 22 AC5 3 ILE A 11 ? ILE A 16 . ? 4_554 ? 23 AC5 3 GLU A 12 ? GLU A 17 . ? 4_554 ? 24 AC5 3 THR B 66 ? THR B 71 . ? 1_555 ? # _atom_sites.entry_id 3OBH _atom_sites.fract_transf_matrix[1][1] 0.015063 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015063 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023837 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 6 ? ? ? A . n A 1 2 LYS 2 7 ? ? ? A . n A 1 3 LYS 3 8 ? ? ? A . n A 1 4 MSE 4 9 ? ? ? A . n A 1 5 ALA 5 10 ? ? ? A . n A 1 6 GLU 6 11 ? ? ? A . n A 1 7 PHE 7 12 12 PHE PHE A . n A 1 8 THR 8 13 13 THR THR A . n A 1 9 PHE 9 14 14 PHE PHE A . n A 1 10 GLU 10 15 15 GLU GLU A . n A 1 11 ILE 11 16 16 ILE ILE A . n A 1 12 GLU 12 17 17 GLU GLU A . n A 1 13 GLU 13 18 18 GLU GLU A . n A 1 14 HIS 14 19 19 HIS HIS A . n A 1 15 LEU 15 20 20 LEU LEU A . n A 1 16 LEU 16 21 21 LEU LEU A . n A 1 17 THR 17 22 22 THR THR A . n A 1 18 LEU 18 23 23 LEU LEU A . n A 1 19 SER 19 24 24 SER SER A . n A 1 20 GLU 20 25 25 GLU GLU A . n A 1 21 ASN 21 26 26 ASN ASN A . n A 1 22 GLU 22 27 27 GLU GLU A . n A 1 23 LYS 23 28 28 LYS LYS A . n A 1 24 GLY 24 29 29 GLY GLY A . n A 1 25 TRP 25 30 30 TRP TRP A . n A 1 26 THR 26 31 31 THR THR A . n A 1 27 LYS 27 32 32 LYS LYS A . n A 1 28 GLU 28 33 33 GLU GLU A . n A 1 29 ILE 29 34 34 ILE ILE A . n A 1 30 ASN 30 35 35 ASN ASN A . n A 1 31 ARG 31 36 36 ARG ARG A . n A 1 32 VAL 32 37 37 VAL VAL A . n A 1 33 SER 33 38 38 SER SER A . n A 1 34 PHE 34 39 39 PHE PHE A . n A 1 35 ASN 35 40 40 ASN ASN A . n A 1 36 GLY 36 41 41 GLY GLY A . n A 1 37 ALA 37 42 42 ALA ALA A . n A 1 38 PRO 38 43 43 PRO PRO A . n A 1 39 ALA 39 44 44 ALA ALA A . n A 1 40 LYS 40 45 45 LYS LYS A . n A 1 41 PHE 41 46 46 PHE PHE A . n A 1 42 ASP 42 47 47 ASP ASP A . n A 1 43 ILE 43 48 48 ILE ILE A . n A 1 44 ARG 44 49 49 ARG ARG A . n A 1 45 ALA 45 50 50 ALA ALA A . n A 1 46 TRP 46 51 51 TRP TRP A . n A 1 47 SER 47 52 52 SER SER A . n A 1 48 PRO 48 53 53 PRO PRO A . n A 1 49 ASP 49 54 54 ASP ASP A . n A 1 50 HIS 50 55 55 HIS HIS A . n A 1 51 THR 51 56 56 THR THR A . n A 1 52 LYS 52 57 57 LYS LYS A . n A 1 53 MSE 53 58 58 MSE MSE A . n A 1 54 GLY 54 59 59 GLY GLY A . n A 1 55 LYS 55 60 60 LYS LYS A . n A 1 56 GLY 56 61 61 GLY GLY A . n A 1 57 ILE 57 62 62 ILE ILE A . n A 1 58 THR 58 63 63 THR THR A . n A 1 59 LEU 59 64 64 LEU LEU A . n A 1 60 SER 60 65 65 SER SER A . n A 1 61 ASN 61 66 66 ASN ASN A . n A 1 62 GLU 62 67 67 GLU GLU A . n A 1 63 GLU 63 68 68 GLU GLU A . n A 1 64 PHE 64 69 69 PHE PHE A . n A 1 65 GLN 65 70 70 GLN GLN A . n A 1 66 THR 66 71 71 THR THR A . n A 1 67 MSE 67 72 72 MSE MSE A . n A 1 68 VAL 68 73 73 VAL VAL A . n A 1 69 ASP 69 74 74 ASP ASP A . n A 1 70 ALA 70 75 75 ALA ALA A . n A 1 71 PHE 71 76 76 PHE PHE A . n A 1 72 LYS 72 77 77 LYS LYS A . n A 1 73 GLY 73 78 ? ? ? A . n A 1 74 ASN 74 79 ? ? ? A . n A 1 75 LEU 75 80 ? ? ? A . n A 1 76 GLU 76 81 ? ? ? A . n A 1 77 HIS 77 82 ? ? ? A . n A 1 78 HIS 78 83 ? ? ? A . n A 1 79 HIS 79 84 ? ? ? A . n A 1 80 HIS 80 85 ? ? ? A . n A 1 81 HIS 81 86 ? ? ? A . n A 1 82 HIS 82 87 ? ? ? A . n B 1 1 MSE 1 6 ? ? ? B . n B 1 2 LYS 2 7 ? ? ? B . n B 1 3 LYS 3 8 ? ? ? B . n B 1 4 MSE 4 9 ? ? ? B . n B 1 5 ALA 5 10 10 ALA ALA B . n B 1 6 GLU 6 11 11 GLU GLU B . n B 1 7 PHE 7 12 12 PHE PHE B . n B 1 8 THR 8 13 13 THR THR B . n B 1 9 PHE 9 14 14 PHE PHE B . n B 1 10 GLU 10 15 15 GLU GLU B . n B 1 11 ILE 11 16 16 ILE ILE B . n B 1 12 GLU 12 17 17 GLU GLU B . n B 1 13 GLU 13 18 18 GLU GLU B . n B 1 14 HIS 14 19 19 HIS HIS B . n B 1 15 LEU 15 20 20 LEU LEU B . n B 1 16 LEU 16 21 21 LEU LEU B . n B 1 17 THR 17 22 22 THR THR B . n B 1 18 LEU 18 23 23 LEU LEU B . n B 1 19 SER 19 24 24 SER SER B . n B 1 20 GLU 20 25 25 GLU GLU B . n B 1 21 ASN 21 26 26 ASN ASN B . n B 1 22 GLU 22 27 27 GLU GLU B . n B 1 23 LYS 23 28 28 LYS LYS B . n B 1 24 GLY 24 29 29 GLY GLY B . n B 1 25 TRP 25 30 30 TRP TRP B . n B 1 26 THR 26 31 31 THR THR B . n B 1 27 LYS 27 32 32 LYS LYS B . n B 1 28 GLU 28 33 33 GLU GLU B . n B 1 29 ILE 29 34 34 ILE ILE B . n B 1 30 ASN 30 35 35 ASN ASN B . n B 1 31 ARG 31 36 36 ARG ARG B . n B 1 32 VAL 32 37 37 VAL VAL B . n B 1 33 SER 33 38 38 SER SER B . n B 1 34 PHE 34 39 39 PHE PHE B . n B 1 35 ASN 35 40 40 ASN ASN B . n B 1 36 GLY 36 41 41 GLY GLY B . n B 1 37 ALA 37 42 42 ALA ALA B . n B 1 38 PRO 38 43 43 PRO PRO B . n B 1 39 ALA 39 44 44 ALA ALA B . n B 1 40 LYS 40 45 45 LYS LYS B . n B 1 41 PHE 41 46 46 PHE PHE B . n B 1 42 ASP 42 47 47 ASP ASP B . n B 1 43 ILE 43 48 48 ILE ILE B . n B 1 44 ARG 44 49 49 ARG ARG B . n B 1 45 ALA 45 50 50 ALA ALA B . n B 1 46 TRP 46 51 51 TRP TRP B . n B 1 47 SER 47 52 52 SER SER B . n B 1 48 PRO 48 53 53 PRO PRO B . n B 1 49 ASP 49 54 54 ASP ASP B . n B 1 50 HIS 50 55 55 HIS HIS B . n B 1 51 THR 51 56 56 THR THR B . n B 1 52 LYS 52 57 57 LYS LYS B . n B 1 53 MSE 53 58 58 MSE MSE B . n B 1 54 GLY 54 59 59 GLY GLY B . n B 1 55 LYS 55 60 60 LYS LYS B . n B 1 56 GLY 56 61 61 GLY GLY B . n B 1 57 ILE 57 62 62 ILE ILE B . n B 1 58 THR 58 63 63 THR THR B . n B 1 59 LEU 59 64 64 LEU LEU B . n B 1 60 SER 60 65 65 SER SER B . n B 1 61 ASN 61 66 66 ASN ASN B . n B 1 62 GLU 62 67 67 GLU GLU B . n B 1 63 GLU 63 68 68 GLU GLU B . n B 1 64 PHE 64 69 69 PHE PHE B . n B 1 65 GLN 65 70 70 GLN GLN B . n B 1 66 THR 66 71 71 THR THR B . n B 1 67 MSE 67 72 72 MSE MSE B . n B 1 68 VAL 68 73 73 VAL VAL B . n B 1 69 ASP 69 74 74 ASP ASP B . n B 1 70 ALA 70 75 75 ALA ALA B . n B 1 71 PHE 71 76 76 PHE PHE B . n B 1 72 LYS 72 77 ? ? ? B . n B 1 73 GLY 73 78 ? ? ? B . n B 1 74 ASN 74 79 ? ? ? B . n B 1 75 LEU 75 80 ? ? ? B . n B 1 76 GLU 76 81 ? ? ? B . n B 1 77 HIS 77 82 ? ? ? B . n B 1 78 HIS 78 83 ? ? ? B . n B 1 79 HIS 79 84 ? ? ? B . n B 1 80 HIS 80 85 ? ? ? B . n B 1 81 HIS 81 86 ? ? ? B . n B 1 82 HIS 82 87 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACY 1 103 103 ACY ACY A . D 3 CIT 1 201 201 CIT CIT A . E 2 ACY 1 102 102 ACY ACY B . F 4 PEG 1 1 1 PEG PEG B . G 4 PEG 1 2 2 PEG PEG B . H 5 HOH 1 1 1 HOH HOH A . H 5 HOH 2 2 2 HOH HOH A . H 5 HOH 3 3 3 HOH HOH A . H 5 HOH 4 4 4 HOH HOH A . H 5 HOH 5 5 5 HOH HOH A . H 5 HOH 6 88 6 HOH HOH A . H 5 HOH 7 89 7 HOH HOH A . H 5 HOH 8 90 8 HOH HOH A . H 5 HOH 9 91 9 HOH HOH A . H 5 HOH 10 92 10 HOH HOH A . H 5 HOH 11 93 11 HOH HOH A . H 5 HOH 12 94 12 HOH HOH A . H 5 HOH 13 95 13 HOH HOH A . H 5 HOH 14 96 14 HOH HOH A . H 5 HOH 15 97 15 HOH HOH A . H 5 HOH 16 98 16 HOH HOH A . H 5 HOH 17 99 17 HOH HOH A . H 5 HOH 18 100 18 HOH HOH A . H 5 HOH 19 101 19 HOH HOH A . H 5 HOH 20 102 41 HOH HOH A . H 5 HOH 21 104 43 HOH HOH A . H 5 HOH 22 105 45 HOH HOH A . I 5 HOH 1 88 20 HOH HOH B . I 5 HOH 2 89 21 HOH HOH B . I 5 HOH 3 90 22 HOH HOH B . I 5 HOH 4 91 23 HOH HOH B . I 5 HOH 5 92 24 HOH HOH B . I 5 HOH 6 93 25 HOH HOH B . I 5 HOH 7 94 26 HOH HOH B . I 5 HOH 8 95 27 HOH HOH B . I 5 HOH 9 96 28 HOH HOH B . I 5 HOH 10 97 29 HOH HOH B . I 5 HOH 11 98 30 HOH HOH B . I 5 HOH 12 99 31 HOH HOH B . I 5 HOH 13 100 32 HOH HOH B . I 5 HOH 14 101 33 HOH HOH B . I 5 HOH 15 103 34 HOH HOH B . I 5 HOH 16 104 35 HOH HOH B . I 5 HOH 17 105 36 HOH HOH B . I 5 HOH 18 106 37 HOH HOH B . I 5 HOH 19 107 38 HOH HOH B . I 5 HOH 20 108 39 HOH HOH B . I 5 HOH 21 109 40 HOH HOH B . I 5 HOH 22 110 42 HOH HOH B . I 5 HOH 23 111 44 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 53 A MSE 58 ? MET SELENOMETHIONINE 2 A MSE 67 A MSE 72 ? MET SELENOMETHIONINE 3 B MSE 53 B MSE 58 ? MET SELENOMETHIONINE 4 B MSE 67 B MSE 72 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2890 ? 1 MORE -9 ? 1 'SSA (A^2)' 7950 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-15 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-02-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Structure summary' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 16.8566 _pdbx_refine_tls.origin_y 16.2205 _pdbx_refine_tls.origin_z 23.6655 _pdbx_refine_tls.T[1][1] 0.0238 _pdbx_refine_tls.T[2][2] 0.0113 _pdbx_refine_tls.T[3][3] 0.0264 _pdbx_refine_tls.T[1][2] -0.0049 _pdbx_refine_tls.T[1][3] 0.0067 _pdbx_refine_tls.T[2][3] -0.0043 _pdbx_refine_tls.L[1][1] 0.4194 _pdbx_refine_tls.L[2][2] 0.2270 _pdbx_refine_tls.L[3][3] 0.4365 _pdbx_refine_tls.L[1][2] 0.2461 _pdbx_refine_tls.L[1][3] -0.0452 _pdbx_refine_tls.L[2][3] -0.0339 _pdbx_refine_tls.S[1][1] -0.0248 _pdbx_refine_tls.S[1][2] -0.0998 _pdbx_refine_tls.S[1][3] -0.0121 _pdbx_refine_tls.S[2][1] -0.0157 _pdbx_refine_tls.S[2][2] 0.0059 _pdbx_refine_tls.S[2][3] -0.0209 _pdbx_refine_tls.S[3][1] 0.0278 _pdbx_refine_tls.S[3][2] 0.0316 _pdbx_refine_tls.S[3][3] -0.0017 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.6.4_486 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 PDB_EXTRACT 3.100 'Jan. 22, 2010' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 4 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 5 PHENIX . ? ? ? ? phasing ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 98 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 99 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.06 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 B MSE 72 ? N B B MSE 67 N 2 1 Y 0 B MSE 72 ? CA B B MSE 67 CA 3 1 Y 0 B MSE 72 ? C B B MSE 67 C 4 1 Y 0 B MSE 72 ? O B B MSE 67 O 5 1 Y 0 B MSE 72 ? CB B B MSE 67 CB 6 1 Y 0 B MSE 72 ? CG B B MSE 67 CG 7 1 Y 0 B MSE 72 ? SE B B MSE 67 SE 8 1 Y 0 B MSE 72 ? CE B B MSE 67 CE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 6 ? A MSE 1 2 1 Y 1 A LYS 7 ? A LYS 2 3 1 Y 1 A LYS 8 ? A LYS 3 4 1 Y 1 A MSE 9 ? A MSE 4 5 1 Y 1 A ALA 10 ? A ALA 5 6 1 Y 1 A GLU 11 ? A GLU 6 7 1 Y 1 A GLY 78 ? A GLY 73 8 1 Y 1 A ASN 79 ? A ASN 74 9 1 Y 1 A LEU 80 ? A LEU 75 10 1 Y 1 A GLU 81 ? A GLU 76 11 1 Y 1 A HIS 82 ? A HIS 77 12 1 Y 1 A HIS 83 ? A HIS 78 13 1 Y 1 A HIS 84 ? A HIS 79 14 1 Y 1 A HIS 85 ? A HIS 80 15 1 Y 1 A HIS 86 ? A HIS 81 16 1 Y 1 A HIS 87 ? A HIS 82 17 1 Y 1 B MSE 6 ? B MSE 1 18 1 Y 1 B LYS 7 ? B LYS 2 19 1 Y 1 B LYS 8 ? B LYS 3 20 1 Y 1 B MSE 9 ? B MSE 4 21 1 Y 1 B LYS 77 ? B LYS 72 22 1 Y 1 B GLY 78 ? B GLY 73 23 1 Y 1 B ASN 79 ? B ASN 74 24 1 Y 1 B LEU 80 ? B LEU 75 25 1 Y 1 B GLU 81 ? B GLU 76 26 1 Y 1 B HIS 82 ? B HIS 77 27 1 Y 1 B HIS 83 ? B HIS 78 28 1 Y 1 B HIS 84 ? B HIS 79 29 1 Y 1 B HIS 85 ? B HIS 80 30 1 Y 1 B HIS 86 ? B HIS 81 31 1 Y 1 B HIS 87 ? B HIS 82 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETIC ACID' ACY 3 'CITRIC ACID' CIT 4 'DI(HYDROXYETHYL)ETHER' PEG 5 water HOH #