HEADER HYDROLASE 09-AUG-10 3OCA TITLE CRYSTAL STRUCTURE OF PEPTIDE DEFORMYLASE FROM EHRLICHIA CHAFFEENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE DEFORMYLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.1.88; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EHRLICHIA CHAFFEENSIS; SOURCE 3 ORGANISM_TAXID: 205920; SOURCE 4 STRAIN: ARKANSAS; SOURCE 5 GENE: CDD:29602, DEF, ECH_0073; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, EHRLICHIA CHAFFEENSIS, PEPTIDE DEFORMYLASE, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 06-SEP-23 3OCA 1 REMARK SEQADV LINK REVDAT 2 15-SEP-10 3OCA 1 REMARK REVDAT 1 08-SEP-10 3OCA 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID),J.ABENDROTH,B.SANKARAN,T.E.EDWARDS,B.STAKER JRNL TITL CRYSTAL STRUCTURE OF PEPTIDE DEFORMYLASE FROM EHRLICHIA JRNL TITL 2 CHAFFEENSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 17598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 863 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1201 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2770 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70000 REMARK 3 B22 (A**2) : 0.26000 REMARK 3 B33 (A**2) : -0.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.251 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.170 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.222 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2825 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1886 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3827 ; 1.283 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4630 ; 0.826 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 5.755 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;34.530 ;24.711 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 496 ;15.259 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.276 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 442 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3132 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 540 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1784 ; 0.535 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 726 ; 0.119 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2866 ; 1.039 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1041 ; 1.742 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 959 ; 2.939 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 65 4 REMARK 3 1 B 2 B 65 4 REMARK 3 2 A 84 A 180 4 REMARK 3 2 B 84 B 180 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2114 ; 0.410 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2114 ; 0.550 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 28.1840 -19.9710 23.6820 REMARK 3 T TENSOR REMARK 3 T11: 0.1715 T22: 0.1005 REMARK 3 T33: 0.1470 T12: -0.0710 REMARK 3 T13: -0.0209 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 1.6962 L22: 1.6872 REMARK 3 L33: 1.9313 L12: 0.3530 REMARK 3 L13: 0.5348 L23: 0.2401 REMARK 3 S TENSOR REMARK 3 S11: 0.1060 S12: -0.2042 S13: -0.1890 REMARK 3 S21: -0.0047 S22: -0.0863 S23: -0.0168 REMARK 3 S31: 0.2175 S32: -0.1434 S33: -0.0197 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1260 3.8230 15.5970 REMARK 3 T TENSOR REMARK 3 T11: 0.1224 T22: 0.0559 REMARK 3 T33: 0.2170 T12: -0.0153 REMARK 3 T13: -0.0399 T23: -0.0342 REMARK 3 L TENSOR REMARK 3 L11: 2.0117 L22: 1.8888 REMARK 3 L33: 2.8298 L12: -0.0472 REMARK 3 L13: 0.6628 L23: -0.0159 REMARK 3 S TENSOR REMARK 3 S11: -0.0332 S12: -0.2105 S13: 0.3113 REMARK 3 S21: -0.1337 S22: -0.0340 S23: 0.2234 REMARK 3 S31: 0.0008 S32: -0.2049 S33: 0.0672 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3OCA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060934. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17678 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1N5N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM AMMONIUM CITRATE, 20% PEG 3350; REMARK 280 PROTEIN AT 28MG/ML, PH 8.5, VAPOR DIFFUSION, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 290K, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.13000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.21500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.13000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.21500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 66 REMARK 465 PHE A 67 REMARK 465 GLU A 68 REMARK 465 ASP A 69 REMARK 465 SER A 70 REMARK 465 GLU A 71 REMARK 465 ASP A 72 REMARK 465 ILE A 73 REMARK 465 MET B -20 REMARK 465 ALA B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 THR B -10 REMARK 465 LEU B -9 REMARK 465 GLU B -8 REMARK 465 ALA B -7 REMARK 465 GLN B -6 REMARK 465 THR B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 70 REMARK 465 GLU B 71 REMARK 465 ASP B 72 REMARK 465 ILE B 73 REMARK 465 GLU B 74 REMARK 465 ASN B 75 REMARK 465 VAL B 76 REMARK 465 GLU B 77 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 12 CG CD CE NZ REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 GLN A 43 CG CD OE1 NE2 REMARK 470 ASN A 75 CG OD1 ND2 REMARK 470 VAL A 76 CG1 CG2 REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 LYS A 181 CG CD CE NZ REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 ARG A 184 CG CD NE CZ NH1 NH2 REMARK 470 THR A 185 OG1 CG2 REMARK 470 ASP A 186 CG OD1 OD2 REMARK 470 LYS B 12 CG CD CE NZ REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 GLN B 26 CG CD OE1 NE2 REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 GLU B 66 CG CD OE1 OE2 REMARK 470 PHE B 67 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 68 CG CD OE1 OE2 REMARK 470 ASP B 78 CG OD1 OD2 REMARK 470 GLU B 81 CG CD OE1 OE2 REMARK 470 LYS B 181 CG CD CE NZ REMARK 470 LYS B 182 CG CD CE NZ REMARK 470 ARG B 184 CG CD NE CZ NH1 NH2 REMARK 470 THR B 185 OG1 CG2 REMARK 470 ASP B 186 CG OD1 OD2 REMARK 470 LEU B 187 CG CD1 CD2 REMARK 470 ILE B 188 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 11 120.70 -38.70 REMARK 500 GLN A 43 31.63 72.75 REMARK 500 PHE B 67 106.15 -59.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 111 SG REMARK 620 2 HIS A 153 NE2 114.2 REMARK 620 3 HIS A 157 NE2 107.2 110.8 REMARK 620 4 HOH A 189 O 118.7 106.3 98.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 111 SG REMARK 620 2 HIS B 153 NE2 116.7 REMARK 620 3 HIS B 157 NE2 101.4 107.9 REMARK 620 4 HOH B 238 O 123.4 105.2 99.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EHCHA.01519.A RELATED DB: TARGETDB DBREF 3OCA A 1 188 UNP Q2GI30 Q2GI30_EHRCR 1 188 DBREF 3OCA B 1 188 UNP Q2GI30 Q2GI30_EHRCR 1 188 SEQADV 3OCA MET A -20 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA ALA A -19 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA HIS A -18 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA HIS A -17 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA HIS A -16 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA HIS A -15 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA HIS A -14 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA HIS A -13 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA MET A -12 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA GLY A -11 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA THR A -10 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA LEU A -9 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA GLU A -8 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA ALA A -7 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA GLN A -6 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA THR A -5 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA GLN A -4 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA GLY A -3 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA PRO A -2 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA GLY A -1 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA SER A 0 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA MET B -20 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA ALA B -19 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA HIS B -18 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA HIS B -17 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA HIS B -16 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA HIS B -15 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA HIS B -14 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA HIS B -13 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA MET B -12 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA GLY B -11 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA THR B -10 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA LEU B -9 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA GLU B -8 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA ALA B -7 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA GLN B -6 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA THR B -5 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA GLN B -4 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA GLY B -3 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA PRO B -2 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA GLY B -1 UNP Q2GI30 EXPRESSION TAG SEQADV 3OCA SER B 0 UNP Q2GI30 EXPRESSION TAG SEQRES 1 A 209 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 209 ALA GLN THR GLN GLY PRO GLY SER MET SER VAL LEU SER SEQRES 3 A 209 ILE VAL THR VAL PRO ASP LYS ARG LEU SER LEU CYS SER SEQRES 4 A 209 GLU GLU VAL GLU LYS VAL ASP GLN SER ILE ARG LYS LEU SEQRES 5 A 209 VAL ASP ASP MET PHE GLU THR MET HIS ALA ASN GLN GLY SEQRES 6 A 209 LEU GLY LEU ALA ALA VAL GLN VAL GLY VAL HIS LYS ARG SEQRES 7 A 209 ILE LEU VAL MET ASN VAL PRO GLU GLU PHE GLU ASP SER SEQRES 8 A 209 GLU ASP ILE GLU ASN VAL GLU ASP LYS ILE GLU GLY TYR SEQRES 9 A 209 GLU LEU TYR GLY GLY PRO TYR CYS ILE ILE ASN PRO LYS SEQRES 10 A 209 ILE VAL ASP ILE SER GLN GLU LYS VAL LYS LEU LYS GLU SEQRES 11 A 209 GLY CYS LEU SER VAL PRO GLY TYR PHE ASP TYR ILE VAL SEQRES 12 A 209 ARG PRO GLN ARG ILE ALA VAL GLN TYR LEU ASP TYR ASN SEQRES 13 A 209 GLY ASN GLU CYS ILE ILE LYS ALA GLN GLY TRP LEU ALA SEQRES 14 A 209 ARG CYS LEU GLN HIS GLU ILE ASP HIS LEU ASN GLY THR SEQRES 15 A 209 VAL PHE LEU LYS TYR LEU SER LYS PHE LYS ARG ASP PHE SEQRES 16 A 209 ALA ILE GLU LYS VAL LYS LYS LYS GLU ARG THR ASP LEU SEQRES 17 A 209 ILE SEQRES 1 B 209 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 209 ALA GLN THR GLN GLY PRO GLY SER MET SER VAL LEU SER SEQRES 3 B 209 ILE VAL THR VAL PRO ASP LYS ARG LEU SER LEU CYS SER SEQRES 4 B 209 GLU GLU VAL GLU LYS VAL ASP GLN SER ILE ARG LYS LEU SEQRES 5 B 209 VAL ASP ASP MET PHE GLU THR MET HIS ALA ASN GLN GLY SEQRES 6 B 209 LEU GLY LEU ALA ALA VAL GLN VAL GLY VAL HIS LYS ARG SEQRES 7 B 209 ILE LEU VAL MET ASN VAL PRO GLU GLU PHE GLU ASP SER SEQRES 8 B 209 GLU ASP ILE GLU ASN VAL GLU ASP LYS ILE GLU GLY TYR SEQRES 9 B 209 GLU LEU TYR GLY GLY PRO TYR CYS ILE ILE ASN PRO LYS SEQRES 10 B 209 ILE VAL ASP ILE SER GLN GLU LYS VAL LYS LEU LYS GLU SEQRES 11 B 209 GLY CYS LEU SER VAL PRO GLY TYR PHE ASP TYR ILE VAL SEQRES 12 B 209 ARG PRO GLN ARG ILE ALA VAL GLN TYR LEU ASP TYR ASN SEQRES 13 B 209 GLY ASN GLU CYS ILE ILE LYS ALA GLN GLY TRP LEU ALA SEQRES 14 B 209 ARG CYS LEU GLN HIS GLU ILE ASP HIS LEU ASN GLY THR SEQRES 15 B 209 VAL PHE LEU LYS TYR LEU SER LYS PHE LYS ARG ASP PHE SEQRES 16 B 209 ALA ILE GLU LYS VAL LYS LYS LYS GLU ARG THR ASP LEU SEQRES 17 B 209 ILE HET ZN A 300 1 HET CL A 301 1 HET CL B 301 1 HET ZN B 300 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CL 2(CL 1-) FORMUL 7 HOH *128(H2 O) HELIX 1 1 ASP A 11 LEU A 16 5 6 HELIX 2 2 ASP A 25 GLN A 43 1 19 HELIX 3 3 VAL A 50 GLY A 53 5 4 HELIX 4 4 GLN A 144 ASN A 159 1 16 HELIX 5 5 VAL A 162 LEU A 167 5 6 HELIX 6 6 SER A 168 GLU A 183 1 16 HELIX 7 7 ASP B 11 LEU B 16 5 6 HELIX 8 8 ASP B 25 ASN B 42 1 18 HELIX 9 9 VAL B 50 GLY B 53 5 4 HELIX 10 10 GLN B 144 ASN B 159 1 16 HELIX 11 11 VAL B 162 LEU B 167 5 6 HELIX 12 12 SER B 168 ASP B 186 1 19 SHEET 1 A 5 GLY A 46 ALA A 48 0 SHEET 2 A 5 ILE A 58 VAL A 63 -1 O VAL A 60 N LEU A 47 SHEET 3 A 5 GLY A 87 ILE A 100 -1 O GLY A 87 N VAL A 63 SHEET 4 A 5 ILE A 127 LEU A 132 -1 O GLN A 130 N LYS A 96 SHEET 5 A 5 GLU A 138 ALA A 143 -1 O CYS A 139 N TYR A 131 SHEET 1 B 2 LYS A 104 GLU A 109 0 SHEET 2 B 2 ASP A 119 PRO A 124 -1 O ASP A 119 N GLU A 109 SHEET 1 C 5 GLY B 46 ALA B 48 0 SHEET 2 C 5 ILE B 58 VAL B 63 -1 O VAL B 60 N LEU B 47 SHEET 3 C 5 GLY B 87 ILE B 100 -1 O ILE B 92 N LEU B 59 SHEET 4 C 5 ILE B 127 LEU B 132 -1 O ALA B 128 N ASP B 99 SHEET 5 C 5 GLU B 138 ALA B 143 -1 O CYS B 139 N TYR B 131 SHEET 1 D 2 LYS B 104 GLU B 109 0 SHEET 2 D 2 ASP B 119 PRO B 124 -1 O ASP B 119 N GLU B 109 SSBOND 1 CYS A 17 CYS B 17 1555 1555 2.07 LINK SG CYS A 111 ZN ZN A 300 1555 1555 2.27 LINK NE2 HIS A 153 ZN ZN A 300 1555 1555 2.08 LINK NE2 HIS A 157 ZN ZN A 300 1555 1555 2.01 LINK O HOH A 189 ZN ZN A 300 1555 1555 1.93 LINK SG CYS B 111 ZN ZN B 300 1555 1555 2.21 LINK NE2 HIS B 153 ZN ZN B 300 1555 1555 2.10 LINK NE2 HIS B 157 ZN ZN B 300 1555 1555 2.13 LINK O HOH B 238 ZN ZN B 300 1555 1555 2.04 CISPEP 1 VAL A 9 PRO A 10 0 5.14 CISPEP 2 GLY A 88 PRO A 89 0 3.32 CISPEP 3 VAL B 9 PRO B 10 0 6.85 CISPEP 4 GLY B 88 PRO B 89 0 0.43 SITE 1 AC1 5 GLN A 51 CYS A 111 HIS A 153 HIS A 157 SITE 2 AC1 5 HOH A 189 SITE 1 AC2 1 GLU A 138 SITE 1 AC3 1 GLU B 138 SITE 1 AC4 4 CYS B 111 HIS B 153 HIS B 157 HOH B 238 CRYST1 84.260 64.430 80.910 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011868 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015521 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012359 0.00000