HEADER MEMBRANE PROTEIN 10-AUG-10 3OCM TITLE THE CRYSTAL STRUCTURE OF A DOMAIN FROM A POSSIBLE MEMBRANE PROTEIN OF TITLE 2 BORDETELLA PARAPERTUSSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE MEMBRANE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 299-469; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PARAPERTUSSIS; SOURCE 3 ORGANISM_TAXID: 519; SOURCE 4 GENE: BPP2278; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: PPK1037; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, MCSG, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,C.TESAR,G.COBB,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 1 06-OCT-10 3OCM 0 JRNL AUTH K.TAN,C.TESAR,G.COBB,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A DOMAIN FROM A POSSIBLE MEMBRANE JRNL TITL 2 PROTEIN OF BORDETELLA PARAPERTUSSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 49105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6292 - 3.8789 0.99 5190 269 0.1697 0.1829 REMARK 3 2 3.8789 - 3.0792 1.00 4971 263 0.1605 0.1847 REMARK 3 3 3.0792 - 2.6901 0.99 4896 253 0.1777 0.2080 REMARK 3 4 2.6901 - 2.4442 0.99 4802 283 0.1790 0.2094 REMARK 3 5 2.4442 - 2.2690 0.98 4769 261 0.1662 0.1953 REMARK 3 6 2.2690 - 2.1353 0.97 4690 228 0.1614 0.2021 REMARK 3 7 2.1353 - 2.0283 0.95 4592 252 0.1662 0.1914 REMARK 3 8 2.0283 - 1.9400 0.92 4439 238 0.1795 0.2036 REMARK 3 9 1.9400 - 1.8654 0.88 4250 228 0.1946 0.2142 REMARK 3 10 1.8654 - 1.8010 0.83 4015 216 0.2271 0.2517 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 45.81 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.60670 REMARK 3 B22 (A**2) : 2.60670 REMARK 3 B33 (A**2) : -5.21330 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2449 REMARK 3 ANGLE : 1.266 3344 REMARK 3 CHIRALITY : 0.074 389 REMARK 3 PLANARITY : 0.005 429 REMARK 3 DIHEDRAL : 17.282 933 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 26.0667 65.2456 14.5323 REMARK 3 T TENSOR REMARK 3 T11: 0.1173 T22: 0.1122 REMARK 3 T33: 0.0801 T12: 0.0347 REMARK 3 T13: 0.0039 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.9915 L22: 0.5628 REMARK 3 L33: 0.5423 L12: -0.2055 REMARK 3 L13: -0.1015 L23: 0.1928 REMARK 3 S TENSOR REMARK 3 S11: 0.0538 S12: 0.1087 S13: -0.0062 REMARK 3 S21: -0.0838 S22: -0.0264 S23: 0.0244 REMARK 3 S31: 0.0776 S32: 0.0725 S33: -0.0191 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 31.4128 71.5128 32.6308 REMARK 3 T TENSOR REMARK 3 T11: 0.1296 T22: 0.1640 REMARK 3 T33: 0.1142 T12: 0.0446 REMARK 3 T13: 0.0038 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.4217 L22: 1.0304 REMARK 3 L33: 0.8176 L12: -0.3287 REMARK 3 L13: 0.4506 L23: -0.1325 REMARK 3 S TENSOR REMARK 3 S11: -0.0550 S12: -0.0987 S13: 0.0459 REMARK 3 S21: 0.0822 S22: 0.0715 S23: -0.0516 REMARK 3 S31: -0.0229 S32: 0.0713 S33: -0.0078 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3OCM COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-10. REMARK 100 THE RCSB ID CODE IS RCSB060946. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51470 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 39.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.73200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD/MLPHARE/DM/ARP/WARP/HKL3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 1.8M MGSO4, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 76.14450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 76.14450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 76.14450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 76.14450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 76.14450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.14450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 76.14450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.14450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. IT IS POSSIBLY A DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -686.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 152.28900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 76.14450 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 76.14450 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -76.14450 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 76.14450 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -329.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 46.88800 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -159.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 297 REMARK 465 ASN A 298 REMARK 465 ALA A 299 REMARK 465 SER A 300 REMARK 465 ASP A 301 REMARK 465 GLU A 302 REMARK 465 SER A 303 REMARK 465 ASP A 304 REMARK 465 LEU A 305 REMARK 465 PRO A 306 REMARK 465 SER A 307 REMARK 465 ALA A 308 REMARK 465 MSE A 309 REMARK 465 PRO A 310 REMARK 465 ALA A 311 REMARK 465 VAL A 312 REMARK 465 PRO A 313 REMARK 465 ASP A 463 REMARK 465 ILE A 464 REMARK 465 VAL A 465 REMARK 465 ALA A 466 REMARK 465 GLU A 467 REMARK 465 SER A 468 REMARK 465 GLU A 469 REMARK 465 SER B 297 REMARK 465 ASN B 298 REMARK 465 ALA B 299 REMARK 465 SER B 300 REMARK 465 ASP B 301 REMARK 465 GLU B 302 REMARK 465 SER B 303 REMARK 465 ASP B 304 REMARK 465 LEU B 305 REMARK 465 PRO B 306 REMARK 465 SER B 307 REMARK 465 ALA B 308 REMARK 465 MSE B 309 REMARK 465 PRO B 310 REMARK 465 ALA B 311 REMARK 465 VAL B 312 REMARK 465 PRO B 313 REMARK 465 ALA B 314 REMARK 465 LEU B 461 REMARK 465 PRO B 462 REMARK 465 ASP B 463 REMARK 465 ILE B 464 REMARK 465 VAL B 465 REMARK 465 ALA B 466 REMARK 465 GLU B 467 REMARK 465 SER B 468 REMARK 465 GLU B 469 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE B 315 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 455 78.04 -119.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 6 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 470 O2A REMARK 620 2 ADP A 470 O1B 90.0 REMARK 620 3 HOH A 199 O 93.1 94.1 REMARK 620 4 HOH A 211 O 95.2 95.0 167.7 REMARK 620 5 HOH B 207 O 175.9 86.1 85.9 86.4 REMARK 620 6 HOH A 291 O 93.3 176.0 87.8 82.6 90.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 5 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP B 1 O2A REMARK 620 2 ADP B 1 O2B 89.0 REMARK 620 3 HOH B 209 O 91.1 93.9 REMARK 620 4 HOH B 220 O 95.6 95.6 168.4 REMARK 620 5 HOH A 213 O 176.6 87.9 87.6 86.2 REMARK 620 6 HOH B 202 O 91.3 178.8 87.2 83.2 91.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 3 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 231 O REMARK 620 2 HOH B 233 O 88.7 REMARK 620 3 HOH B 224 O 176.5 92.2 REMARK 620 4 HOH B 239 O 89.1 176.0 89.7 REMARK 620 5 HOH B 279 O 89.3 89.1 87.4 87.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 2 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 227 O REMARK 620 2 HOH A 210 O 90.2 REMARK 620 3 HOH A 201 O 176.3 86.8 REMARK 620 4 HOH A 221 O 94.0 172.5 88.8 REMARK 620 5 HOH A 215 O 87.4 87.0 90.4 86.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 218 O REMARK 620 2 GLU A 460 OE1 94.0 REMARK 620 3 HOH A 217 O 92.4 96.7 REMARK 620 4 HOH A 222 O 174.5 91.1 89.1 REMARK 620 5 HOH A 219 O 90.1 174.6 86.5 84.7 REMARK 620 6 HOH A 216 O 86.8 91.2 172.1 91.0 85.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 4 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 240 O REMARK 620 2 HOH B 252 O 88.3 REMARK 620 3 HOH B 268 O 176.4 93.8 REMARK 620 4 GLU B 460 OE1 93.4 95.9 89.3 REMARK 620 5 HOH B 229 O 90.1 169.8 87.4 94.3 REMARK 620 6 HOH B 248 O 87.9 82.9 89.5 178.2 87.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 7 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 449 OE1 REMARK 620 2 HOH A 286 O 101.2 REMARK 620 3 HOH A 289 O 165.0 91.7 REMARK 620 4 HOH A 287 O 98.1 110.2 84.3 REMARK 620 5 HOH A 288 O 82.4 157.8 82.8 90.7 REMARK 620 6 HOH A 285 O 98.3 82.9 75.5 156.4 74.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 470 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 471 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 470 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 471 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC62387.1 RELATED DB: TARGETDB DBREF 3OCM A 300 469 UNP Q7W867 Q7W867_BORPA 299 468 DBREF 3OCM B 300 469 UNP Q7W867 Q7W867_BORPA 299 468 SEQADV 3OCM SER A 297 UNP Q7W867 EXPRESSION TAG SEQADV 3OCM ASN A 298 UNP Q7W867 EXPRESSION TAG SEQADV 3OCM ALA A 299 UNP Q7W867 EXPRESSION TAG SEQADV 3OCM SER B 297 UNP Q7W867 EXPRESSION TAG SEQADV 3OCM ASN B 298 UNP Q7W867 EXPRESSION TAG SEQADV 3OCM ALA B 299 UNP Q7W867 EXPRESSION TAG SEQRES 1 A 173 SER ASN ALA SER ASP GLU SER ASP LEU PRO SER ALA MSE SEQRES 2 A 173 PRO ALA VAL PRO ALA PHE GLY VAL GLU GLU ARG ASN MSE SEQRES 3 A 173 VAL SER GLY VAL LEU THR LEU ALA GLU ARG SER ILE ARG SEQRES 4 A 173 SER ILE MSE THR PRO ARG THR ASP VAL SER TRP VAL ASN SEQRES 5 A 173 ILE ASP ASP ASP ALA ALA THR ILE ARG GLN GLN LEU THR SEQRES 6 A 173 ALA ALA PRO HIS SER PHE PHE PRO VAL CYS ARG GLY SER SEQRES 7 A 173 LEU ASP GLU VAL VAL GLY ILE GLY ARG ALA LYS ASP LEU SEQRES 8 A 173 VAL ALA ASP LEU ILE THR GLU GLY ARG VAL ARG ARG ASN SEQRES 9 A 173 ARG LEU ARG ASP PRO ILE ILE VAL HIS GLU SER ILE GLY SEQRES 10 A 173 ILE LEU ARG LEU MSE ASP THR LEU LYS ARG SER ARG GLY SEQRES 11 A 173 GLN LEU VAL LEU VAL ALA ASP GLU PHE GLY ALA ILE GLU SEQRES 12 A 173 GLY LEU VAL THR PRO ILE ASP VAL PHE GLU ALA ILE ALA SEQRES 13 A 173 GLY GLU PHE PRO ASP GLU ASP GLU LEU PRO ASP ILE VAL SEQRES 14 A 173 ALA GLU SER GLU SEQRES 1 B 173 SER ASN ALA SER ASP GLU SER ASP LEU PRO SER ALA MSE SEQRES 2 B 173 PRO ALA VAL PRO ALA PHE GLY VAL GLU GLU ARG ASN MSE SEQRES 3 B 173 VAL SER GLY VAL LEU THR LEU ALA GLU ARG SER ILE ARG SEQRES 4 B 173 SER ILE MSE THR PRO ARG THR ASP VAL SER TRP VAL ASN SEQRES 5 B 173 ILE ASP ASP ASP ALA ALA THR ILE ARG GLN GLN LEU THR SEQRES 6 B 173 ALA ALA PRO HIS SER PHE PHE PRO VAL CYS ARG GLY SER SEQRES 7 B 173 LEU ASP GLU VAL VAL GLY ILE GLY ARG ALA LYS ASP LEU SEQRES 8 B 173 VAL ALA ASP LEU ILE THR GLU GLY ARG VAL ARG ARG ASN SEQRES 9 B 173 ARG LEU ARG ASP PRO ILE ILE VAL HIS GLU SER ILE GLY SEQRES 10 B 173 ILE LEU ARG LEU MSE ASP THR LEU LYS ARG SER ARG GLY SEQRES 11 B 173 GLN LEU VAL LEU VAL ALA ASP GLU PHE GLY ALA ILE GLU SEQRES 12 B 173 GLY LEU VAL THR PRO ILE ASP VAL PHE GLU ALA ILE ALA SEQRES 13 B 173 GLY GLU PHE PRO ASP GLU ASP GLU LEU PRO ASP ILE VAL SEQRES 14 B 173 ALA GLU SER GLU MODRES 3OCM MSE A 322 MET SELENOMETHIONINE MODRES 3OCM MSE A 338 MET SELENOMETHIONINE MODRES 3OCM MSE A 418 MET SELENOMETHIONINE MODRES 3OCM MSE B 322 MET SELENOMETHIONINE MODRES 3OCM MSE B 338 MET SELENOMETHIONINE MODRES 3OCM MSE B 418 MET SELENOMETHIONINE HET MSE A 322 8 HET MSE A 338 8 HET MSE A 418 8 HET MSE B 322 8 HET MSE B 338 8 HET MSE B 418 8 HET MG A 1 1 HET MG A 2 1 HET MG A 5 1 HET MG A 7 1 HET ADP A 470 27 HET SO4 A 3 5 HET SO4 A 4 5 HET SO4 A 471 5 HET MG B 3 1 HET MG B 4 1 HET MG B 6 1 HET ADP B 1 27 HET SO4 B 470 5 HET SO4 B 2 5 HET SO4 B 471 5 HET SO4 B 7 5 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 MG 7(MG 2+) FORMUL 7 ADP 2(C10 H15 N5 O10 P2) FORMUL 8 SO4 7(O4 S 2-) FORMUL 19 HOH *318(H2 O) HELIX 1 1 GLY A 316 LEU A 327 1 12 HELIX 2 2 THR A 328 ARG A 332 5 5 HELIX 3 3 THR A 342 VAL A 344 5 3 HELIX 4 4 ASP A 352 ALA A 363 1 12 HELIX 5 5 ALA A 384 GLY A 395 1 12 HELIX 6 6 ARG A 398 LEU A 402 5 5 HELIX 7 7 HIS A 409 ILE A 412 5 4 HELIX 8 8 GLY A 413 SER A 424 1 12 HELIX 9 9 THR A 443 GLY A 453 1 11 HELIX 10 10 GLY B 316 LEU B 327 1 12 HELIX 11 11 THR B 328 ARG B 332 5 5 HELIX 12 12 SER B 333 MSE B 338 1 6 HELIX 13 13 THR B 342 VAL B 344 5 3 HELIX 14 14 ASP B 352 ALA B 363 1 12 HELIX 15 15 ALA B 384 GLY B 395 1 12 HELIX 16 16 ARG B 398 LEU B 402 5 5 HELIX 17 17 HIS B 409 ILE B 412 5 4 HELIX 18 18 GLY B 413 ARG B 425 1 13 HELIX 19 19 THR B 443 GLY B 453 1 11 SHEET 1 A 4 THR A 339 PRO A 340 0 SHEET 2 A 4 ILE A 438 VAL A 442 -1 O LEU A 441 N THR A 339 SHEET 3 A 4 VAL A 429 ALA A 432 -1 N VAL A 431 O GLU A 439 SHEET 4 A 4 ILE A 407 VAL A 408 1 N VAL A 408 O LEU A 430 SHEET 1 B 3 VAL A 347 ASN A 348 0 SHEET 2 B 3 PHE A 367 CYS A 371 1 O CYS A 371 N VAL A 347 SHEET 3 B 3 VAL A 378 ARG A 383 -1 O GLY A 380 N VAL A 370 SHEET 1 C 4 THR B 339 PRO B 340 0 SHEET 2 C 4 ILE B 438 VAL B 442 -1 O LEU B 441 N THR B 339 SHEET 3 C 4 VAL B 429 ALA B 432 -1 N VAL B 431 O GLU B 439 SHEET 4 C 4 ILE B 407 VAL B 408 1 N VAL B 408 O LEU B 430 SHEET 1 D 3 VAL B 347 ASN B 348 0 SHEET 2 D 3 PHE B 367 CYS B 371 1 O CYS B 371 N VAL B 347 SHEET 3 D 3 VAL B 378 ARG B 383 -1 O VAL B 379 N VAL B 370 LINK C ASN A 321 N MSE A 322 1555 1555 1.33 LINK C MSE A 322 N VAL A 323 1555 1555 1.33 LINK C ILE A 337 N MSE A 338 1555 1555 1.33 LINK C MSE A 338 N THR A 339 1555 1555 1.32 LINK C LEU A 417 N MSE A 418 1555 1555 1.33 LINK C MSE A 418 N ASP A 419 1555 1555 1.33 LINK C ASN B 321 N MSE B 322 1555 1555 1.33 LINK C MSE B 322 N VAL B 323 1555 1555 1.33 LINK C ILE B 337 N MSE B 338 1555 1555 1.33 LINK C MSE B 338 N THR B 339 1555 1555 1.33 LINK C LEU B 417 N MSE B 418 1555 1555 1.32 LINK C MSE B 418 N ASP B 419 1555 1555 1.33 LINK O2A ADP A 470 MG MG B 6 1555 1555 2.02 LINK MG MG A 5 O2A ADP B 1 1555 1555 2.06 LINK O1B ADP A 470 MG MG B 6 1555 1555 2.08 LINK MG MG A 5 O2B ADP B 1 1555 1555 2.08 LINK MG MG B 3 O HOH B 231 1555 1555 2.13 LINK MG MG A 2 O HOH A 227 1555 1555 2.15 LINK MG MG B 3 O HOH B 233 1555 1555 2.16 LINK MG MG B 6 O HOH A 199 1555 1555 2.16 LINK MG MG A 2 O HOH A 210 1555 1555 2.17 LINK MG MG A 5 O HOH B 209 1555 1555 2.17 LINK MG MG B 6 O HOH A 211 1555 1555 2.17 LINK MG MG A 1 O HOH A 218 1555 1555 2.18 LINK MG MG A 5 O HOH B 220 1555 1555 2.18 LINK OE1 GLU A 460 MG MG A 1 1555 1555 2.18 LINK MG MG B 6 O HOH B 207 1555 1555 2.19 LINK MG MG B 3 O HOH B 224 1555 1555 2.20 LINK MG MG A 2 O HOH A 201 1555 1555 2.20 LINK MG MG B 3 O HOH B 239 1555 1555 2.20 LINK MG MG A 2 O HOH A 221 1555 1555 2.21 LINK MG MG A 1 O HOH A 217 1555 1555 2.22 LINK MG MG B 4 O HOH B 240 1555 1555 2.22 LINK MG MG A 1 O HOH A 222 1555 1555 2.23 LINK MG MG A 1 O HOH A 219 1555 1555 2.24 LINK MG MG A 5 O HOH A 213 1555 1555 2.24 LINK MG MG A 1 O HOH A 216 1555 1555 2.24 LINK MG MG B 6 O HOH A 291 1555 1555 2.25 LINK MG MG B 4 O HOH B 252 1555 1555 2.25 LINK MG MG A 2 O HOH A 215 1555 1555 2.26 LINK MG MG A 5 O HOH B 202 1555 1555 2.26 LINK MG MG B 3 O HOH B 279 1555 1555 2.26 LINK MG MG B 4 O HOH B 268 1555 1555 2.28 LINK OE1 GLU B 460 MG MG B 4 1555 1555 2.29 LINK MG MG B 4 O HOH B 229 1555 1555 2.30 LINK MG MG B 4 O HOH B 248 1555 1555 2.31 LINK OE1 GLU A 449 MG MG A 7 1555 1555 2.34 LINK MG MG A 7 O HOH A 286 1555 1555 2.34 LINK MG MG A 7 O HOH A 289 1555 1555 2.37 LINK MG MG A 7 O HOH A 287 1555 1555 2.42 LINK MG MG A 7 O HOH A 288 1555 1555 2.44 LINK MG MG A 7 O HOH A 285 1555 1555 2.61 SITE 1 AC1 6 HOH A 216 HOH A 217 HOH A 218 HOH A 219 SITE 2 AC1 6 HOH A 222 GLU A 460 SITE 1 AC2 6 HOH A 201 HOH A 210 HOH A 215 HOH A 221 SITE 2 AC2 6 HOH A 227 HIS A 365 SITE 1 AC3 5 HOH A 213 ADP B 1 HOH B 202 HOH B 209 SITE 2 AC3 5 HOH B 220 SITE 1 AC4 6 HOH A 285 HOH A 286 HOH A 287 HOH A 288 SITE 2 AC4 6 HOH A 289 GLU A 449 SITE 1 AC5 24 HOH A 41 HOH A 48 HOH A 54 HOH A 199 SITE 2 AC5 24 HOH A 203 HOH A 211 HOH A 216 HOH A 219 SITE 3 AC5 24 HOH A 227 HOH A 241 THR A 339 ASP A 343 SITE 4 AC5 24 SER A 345 HIS A 365 SER A 366 PHE A 367 SITE 5 AC5 24 LEU A 441 THR A 443 ILE A 445 ASP A 446 SITE 6 AC5 24 ASP A 457 HOH A 473 MG B 6 HOH B 207 SITE 1 AC6 5 ARG A 396 ARG A 398 ARG A 399 ASN A 400 SITE 2 AC6 5 SO4 A 471 SITE 1 AC7 2 ARG A 372 ARG B 372 SITE 1 AC8 6 SO4 A 3 HOH A 169 HOH A 191 HOH A 295 SITE 2 AC8 6 HOH A 296 ARG A 341 SITE 1 AC9 6 HOH B 224 HOH B 231 HOH B 233 HOH B 239 SITE 2 AC9 6 HOH B 279 HIS B 365 SITE 1 BC1 6 HOH B 229 HOH B 240 HOH B 248 HOH B 252 SITE 2 BC1 6 HOH B 268 GLU B 460 SITE 1 BC2 5 HOH A 199 HOH A 211 HOH A 291 ADP A 470 SITE 2 BC2 5 HOH B 207 SITE 1 BC3 24 MG A 5 HOH A 213 HOH B 91 HOH B 96 SITE 2 BC3 24 HOH B 196 HOH B 200 HOH B 202 HOH B 205 SITE 3 BC3 24 HOH B 209 HOH B 224 HOH B 225 HOH B 240 SITE 4 BC3 24 HOH B 248 THR B 339 ASP B 343 SER B 345 SITE 5 BC3 24 HIS B 365 SER B 366 PHE B 367 LEU B 441 SITE 6 BC3 24 THR B 443 ILE B 445 ASP B 446 ASP B 457 SITE 1 BC4 3 HOH B 278 ARG B 341 HOH B 479 SITE 1 BC5 4 ARG B 396 ARG B 398 ARG B 399 ASN B 400 SITE 1 BC6 4 HOH B 165 HOH B 170 SER B 333 ARG B 335 SITE 1 BC7 6 HOH B 66 HOH B 76 HOH B 232 SER B 345 SITE 2 BC7 6 GLN B 359 HOH B 480 CRYST1 152.289 152.289 46.888 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006566 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021327 0.00000