HEADER PENICILLIN-BINDING PROTEIN/ANTIBIOTIC 10-AUG-10 3OCN TITLE CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN 3 FROM PSEUDOMONAS TITLE 2 AERUGINOSA IN COMPLEX WITH CEFTAZIDIME COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES IN UNP 35-579; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: PA4418; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: OPPF6502 KEYWDS PENICILLIN-BINDING PROTEINS, PSEUDOMONAS AERUGINOSA, CEFTAZIDIME, KEYWDS 2 STRUCTURAL GENOMICS, OXFORD PROTEIN PRODUCTION FACILITY, OPPF, KEYWDS 3 TRANSPEPTIDASE, CELL WALL BIOSYNTHESIS, OUT PERIPLASMIC MEMBRANE, KEYWDS 4 PENICILLIN-BINDING PROTEIN-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.SAINSBURY,L.BIRD,D.I.STUART,R.J.OWENS,J.REN,OXFORD PROTEIN AUTHOR 2 PRODUCTION FACILITY (OPPF) REVDAT 4 01-NOV-23 3OCN 1 REMARK SEQADV LINK REVDAT 3 26-MAR-14 3OCN 1 JRNL VERSN REVDAT 2 24-NOV-10 3OCN 1 HEADER REVDAT 1 10-NOV-10 3OCN 0 JRNL AUTH S.SAINSBURY,L.BIRD,V.RAO,S.M.SHEPHERD,D.I.STUART,W.N.HUNTER, JRNL AUTH 2 R.J.OWENS,J.REN JRNL TITL CRYSTAL STRUCTURES OF PENICILLIN-BINDING PROTEIN 3 FROM JRNL TITL 2 PSEUDOMONAS AERUGINOSA: COMPARISON OF NATIVE AND JRNL TITL 3 ANTIBIOTIC-BOUND FORMS JRNL REF J.MOL.BIOL. V. 405 173 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 20974151 JRNL DOI 10.1016/J.JMB.2010.10.024 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 14178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 746 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 886 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.4350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3841 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.88000 REMARK 3 B22 (A**2) : -0.85000 REMARK 3 B33 (A**2) : -3.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.369 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.202 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.680 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3948 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2711 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5359 ; 1.019 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6582 ; 0.782 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 501 ; 5.401 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;31.404 ;23.155 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 653 ;16.063 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;15.421 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 601 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4433 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 795 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 78 REMARK 3 RESIDUE RANGE : A 151 A 221 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0880 35.6490 21.3750 REMARK 3 T TENSOR REMARK 3 T11: 0.2158 T22: 0.1568 REMARK 3 T33: 0.1021 T12: -0.0164 REMARK 3 T13: -0.0291 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 1.0937 L22: 1.5058 REMARK 3 L33: 3.8779 L12: 1.2413 REMARK 3 L13: 1.7669 L23: 2.2495 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: 0.0343 S13: -0.0271 REMARK 3 S21: 0.0958 S22: 0.0678 S23: -0.0572 REMARK 3 S31: -0.0308 S32: 0.1656 S33: -0.0843 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3240 27.2460 41.5290 REMARK 3 T TENSOR REMARK 3 T11: 0.2951 T22: 0.1178 REMARK 3 T33: 0.0168 T12: -0.1265 REMARK 3 T13: 0.0018 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 2.6219 L22: 5.5543 REMARK 3 L33: 6.0770 L12: -2.1794 REMARK 3 L13: 1.1378 L23: -1.8552 REMARK 3 S TENSOR REMARK 3 S11: -0.1550 S12: 0.3421 S13: 0.0269 REMARK 3 S21: 0.0407 S22: -0.1399 S23: -0.0540 REMARK 3 S31: -0.3130 S32: 0.4626 S33: 0.2949 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 308 A 360 REMARK 3 ORIGIN FOR THE GROUP (A): 8.8450 3.0310 -29.0300 REMARK 3 T TENSOR REMARK 3 T11: 0.2115 T22: 0.1127 REMARK 3 T33: 0.1335 T12: -0.0577 REMARK 3 T13: 0.0236 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.0980 L22: 3.8653 REMARK 3 L33: 3.0566 L12: 1.1401 REMARK 3 L13: -0.3532 L23: 2.0993 REMARK 3 S TENSOR REMARK 3 S11: -0.0797 S12: 0.0226 S13: -0.0702 REMARK 3 S21: -0.0919 S22: 0.1260 S23: -0.2483 REMARK 3 S31: 0.3765 S32: -0.0595 S33: -0.0463 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 222 A 307 REMARK 3 RESIDUE RANGE : A 361 A 558 REMARK 3 RESIDUE RANGE : A 1 A 1 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7770 16.1650 -9.7050 REMARK 3 T TENSOR REMARK 3 T11: 0.0592 T22: 0.1000 REMARK 3 T33: 0.1214 T12: -0.0139 REMARK 3 T13: -0.0001 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.8525 L22: 0.6907 REMARK 3 L33: 1.3578 L12: -0.2236 REMARK 3 L13: -0.3097 L23: -0.0099 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: -0.1001 S13: -0.0272 REMARK 3 S21: -0.0579 S22: 0.0358 S23: 0.0249 REMARK 3 S31: 0.0797 S32: 0.0533 S33: 0.0044 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3OCN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000060947. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9750 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15047 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.16600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.54500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 3OCL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25%(W/V) POLYETHYLENE GLYCOL 3350, REMARK 280 0.1M BIS-TRIS PROPANE, 1%(W/V) PROTAMINE SULPHATE, PH 7.8, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.54050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.89450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.90600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.89450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.54050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.90600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 16 REMARK 465 ALA A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 SER A 24 REMARK 465 SER A 25 REMARK 465 GLY A 26 REMARK 465 LEU A 27 REMARK 465 GLU A 28 REMARK 465 VAL A 29 REMARK 465 LEU A 30 REMARK 465 PHE A 31 REMARK 465 GLN A 32 REMARK 465 GLY A 33 REMARK 465 PRO A 34 REMARK 465 ASP A 35 REMARK 465 LEU A 36 REMARK 465 HIS A 37 REMARK 465 VAL A 38 REMARK 465 ILE A 39 REMARK 465 ASP A 40 REMARK 465 HIS A 41 REMARK 465 ASP A 42 REMARK 465 PHE A 43 REMARK 465 LEU A 44 REMARK 465 LYS A 45 REMARK 465 GLY A 46 REMARK 465 GLN A 47 REMARK 465 GLY A 48 REMARK 465 ASP A 49 REMARK 465 SER A 491A REMARK 465 VAL A 491B REMARK 465 GLY A 491C REMARK 465 THR A 491D REMARK 465 LYS A 491E REMARK 465 GLY A 491F REMARK 465 TYR A 491G REMARK 465 ARG A 491H REMARK 465 PRO A 559 REMARK 465 THR A 560 REMARK 465 ALA A 561 REMARK 465 THR A 562 REMARK 465 GLU A 563 REMARK 465 GLN A 564 REMARK 465 GLN A 565 REMARK 465 GLN A 566 REMARK 465 VAL A 567 REMARK 465 ASN A 568 REMARK 465 ALA A 569 REMARK 465 ALA A 570 REMARK 465 PRO A 571 REMARK 465 ALA A 572 REMARK 465 LYS A 573 REMARK 465 GLY A 574 REMARK 465 GLY A 575 REMARK 465 ARG A 576 REMARK 465 GLY A 577 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 92 58.77 -141.28 REMARK 500 LEU A 125 -60.11 -99.72 REMARK 500 ASP A 172 31.69 76.79 REMARK 500 ARG A 200 -44.58 -169.33 REMARK 500 VAL A 209 44.19 -97.58 REMARK 500 ARG A 273 66.42 -108.63 REMARK 500 ASN A 275 57.08 -105.61 REMARK 500 ARG A 338 -80.30 -116.04 REMARK 500 ARG A 395 -62.01 70.90 REMARK 500 ASN A 427 40.30 -89.38 REMARK 500 PHE A 505 116.89 -164.99 REMARK 500 ASP A 513 80.10 -160.80 REMARK 500 GLU A 524 81.49 22.56 REMARK 500 SER A 526 -19.94 -150.30 REMARK 500 ALA A 528 -149.55 -165.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CTJ A 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTJ A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OC2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN 3 FROM PSEUDOMONAS REMARK 900 AERUGINOSA REMARK 900 RELATED ID: 3OCL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN 3 FROM PSEUDOMONAS REMARK 900 AERUGINOSA IN COMPLEX WITH CARBENICILLIN DBREF 3OCN A 35 577 UNP Q51504 Q51504_PSEAE 35 579 SEQADV 3OCN MET A 16 UNP Q51504 EXPRESSION TAG SEQADV 3OCN ALA A 17 UNP Q51504 EXPRESSION TAG SEQADV 3OCN HIS A 18 UNP Q51504 EXPRESSION TAG SEQADV 3OCN HIS A 19 UNP Q51504 EXPRESSION TAG SEQADV 3OCN HIS A 20 UNP Q51504 EXPRESSION TAG SEQADV 3OCN HIS A 21 UNP Q51504 EXPRESSION TAG SEQADV 3OCN HIS A 22 UNP Q51504 EXPRESSION TAG SEQADV 3OCN HIS A 23 UNP Q51504 EXPRESSION TAG SEQADV 3OCN SER A 24 UNP Q51504 EXPRESSION TAG SEQADV 3OCN SER A 25 UNP Q51504 EXPRESSION TAG SEQADV 3OCN GLY A 26 UNP Q51504 EXPRESSION TAG SEQADV 3OCN LEU A 27 UNP Q51504 EXPRESSION TAG SEQADV 3OCN GLU A 28 UNP Q51504 EXPRESSION TAG SEQADV 3OCN VAL A 29 UNP Q51504 EXPRESSION TAG SEQADV 3OCN LEU A 30 UNP Q51504 EXPRESSION TAG SEQADV 3OCN PHE A 31 UNP Q51504 EXPRESSION TAG SEQADV 3OCN GLN A 32 UNP Q51504 EXPRESSION TAG SEQADV 3OCN GLY A 33 UNP Q51504 EXPRESSION TAG SEQADV 3OCN PRO A 34 UNP Q51504 EXPRESSION TAG SEQRES 1 A 564 MET ALA HIS HIS HIS HIS HIS HIS SER SER GLY LEU GLU SEQRES 2 A 564 VAL LEU PHE GLN GLY PRO ASP LEU HIS VAL ILE ASP HIS SEQRES 3 A 564 ASP PHE LEU LYS GLY GLN GLY ASP ALA ARG SER VAL ARG SEQRES 4 A 564 HIS ILE ALA ILE PRO ALA HIS ARG GLY LEU ILE THR ASP SEQRES 5 A 564 ARG ASN GLY GLU PRO LEU ALA VAL SER THR PRO VAL THR SEQRES 6 A 564 THR LEU TRP ALA ASN PRO LYS GLU LEU MET THR ALA LYS SEQRES 7 A 564 GLU ARG TRP PRO GLN LEU ALA ALA ALA LEU GLY GLN ASP SEQRES 8 A 564 THR LYS LEU PHE ALA ASP ARG ILE GLU GLN ASN ALA GLU SEQRES 9 A 564 ARG GLU PHE ILE TYR LEU VAL ARG GLY LEU THR PRO GLU SEQRES 10 A 564 GLN GLY GLU GLY VAL ILE ALA LEU LYS VAL PRO GLY VAL SEQRES 11 A 564 TYR SER ILE GLU GLU PHE ARG ARG PHE TYR PRO ALA GLY SEQRES 12 A 564 GLU VAL VAL ALA HIS ALA VAL GLY PHE THR ASP VAL ASP SEQRES 13 A 564 ASP ARG GLY ARG GLU GLY ILE GLU LEU ALA PHE ASP GLU SEQRES 14 A 564 TRP LEU ALA GLY VAL PRO GLY LYS ARG GLN VAL LEU LYS SEQRES 15 A 564 ASP ARG ARG GLY ARG VAL ILE LYS ASP VAL GLN VAL THR SEQRES 16 A 564 LYS ASN ALA LYS PRO GLY LYS THR LEU ALA LEU SER ILE SEQRES 17 A 564 ASP LEU ARG LEU GLN TYR LEU ALA HIS ARG GLU LEU ARG SEQRES 18 A 564 ASN ALA LEU LEU GLU ASN GLY ALA LYS ALA GLY SER LEU SEQRES 19 A 564 VAL ILE MET ASP VAL LYS THR GLY GLU ILE LEU ALA MET SEQRES 20 A 564 THR ASN GLN PRO THR TYR ASN PRO ASN ASN ARG ARG ASN SEQRES 21 A 564 LEU GLN PRO ALA ALA MET ARG ASN ARG ALA MET ILE ASP SEQRES 22 A 564 VAL PHE GLU PRO GLY SER THR VAL LYS PRO PHE SER MET SEQRES 23 A 564 SER ALA ALA LEU ALA SER GLY ARG TRP LYS PRO SER ASP SEQRES 24 A 564 ILE VAL ASP VAL TYR PRO GLY THR LEU GLN ILE GLY ARG SEQRES 25 A 564 TYR THR ILE ARG ASP VAL SER ARG ASN SER ARG GLN LEU SEQRES 26 A 564 ASP LEU THR GLY ILE LEU ILE LYS SER SER ASN VAL GLY SEQRES 27 A 564 ILE SER LYS ILE ALA PHE ASP ILE GLY ALA GLU SER ILE SEQRES 28 A 564 TYR SER VAL MET GLN GLN VAL GLY LEU GLY GLN ASP THR SEQRES 29 A 564 GLY LEU GLY PHE PRO GLY GLU ARG VAL GLY ASN LEU PRO SEQRES 30 A 564 ASN HIS ARG LYS TRP PRO LYS ALA GLU THR ALA THR LEU SEQRES 31 A 564 ALA TYR GLY TYR GLY LEU SER VAL THR ALA ILE GLN LEU SEQRES 32 A 564 ALA HIS ALA TYR ALA ALA LEU ALA ASN ASP GLY LYS SER SEQRES 33 A 564 VAL PRO LEU SER MET THR ARG VAL ASP ARG VAL PRO ASP SEQRES 34 A 564 GLY VAL GLN VAL ILE SER PRO GLU VAL ALA SER THR VAL SEQRES 35 A 564 GLN GLY MET LEU GLN GLN VAL VAL GLU ALA GLN GLY GLY SEQRES 36 A 564 VAL PHE ARG ALA GLN VAL PRO GLY TYR HIS ALA ALA GLY SEQRES 37 A 564 LYS SER GLY THR ALA ARG LYS VAL SER VAL GLY THR LYS SEQRES 38 A 564 GLY TYR ARG GLU ASN ALA TYR ARG SER LEU PHE ALA GLY SEQRES 39 A 564 PHE ALA PRO ALA THR ASP PRO ARG ILE ALA MET VAL VAL SEQRES 40 A 564 VAL ILE ASP GLU PRO SER LYS ALA GLY TYR PHE GLY GLY SEQRES 41 A 564 LEU VAL SER ALA PRO VAL PHE SER LYS VAL MET ALA GLY SEQRES 42 A 564 ALA LEU ARG LEU MET ASN VAL PRO PRO ASP ASN LEU PRO SEQRES 43 A 564 THR ALA THR GLU GLN GLN GLN VAL ASN ALA ALA PRO ALA SEQRES 44 A 564 LYS GLY GLY ARG GLY HET CTJ A 1 31 HETNAM CTJ 1-({(2R)-2-[(1R)-1-{[(2Z)-2-(2-AMINO-1,3-THIAZOL-4-YL)- HETNAM 2 CTJ 2-{[(2-CARBOXYPROPAN-2-YL)OXY]IMINO}ACETYL]AMINO}-2- HETNAM 3 CTJ OXOETHYL]-4-CARBOXY-3,6-DIHYDRO-2H-1,3-THIAZIN-5- HETNAM 4 CTJ YL}METHYL)PYRIDINIUM FORMUL 2 CTJ C22 H25 N6 O7 S2 1+ FORMUL 3 HOH *38(H2 O) HELIX 1 1 ASN A 85 MET A 90 1 6 HELIX 2 2 THR A 91 GLU A 94 5 4 HELIX 3 3 ARG A 95 GLY A 104 1 10 HELIX 4 4 ASP A 106 ASN A 117 1 12 HELIX 5 5 THR A 130 ALA A 139 1 10 HELIX 6 6 ALA A 157 VAL A 160 5 4 HELIX 7 7 VAL A 161 GLY A 166 1 6 HELIX 8 8 GLU A 176 PHE A 182 1 7 HELIX 9 9 PHE A 182 GLY A 188 1 7 HELIX 10 10 ASP A 224 GLY A 243 1 20 HELIX 11 11 GLN A 277 ARG A 282 5 6 HELIX 12 12 ASN A 283 ASP A 288 1 6 HELIX 13 13 PRO A 292 THR A 295 5 4 HELIX 14 14 VAL A 296 GLY A 308 1 13 HELIX 15 15 LEU A 342 SER A 349 1 8 HELIX 16 16 SER A 350 GLY A 362 1 13 HELIX 17 17 GLY A 362 VAL A 373 1 12 HELIX 18 18 PRO A 398 TYR A 407 1 10 HELIX 19 19 THR A 414 ASN A 427 1 14 HELIX 20 20 SER A 450 ALA A 467 1 18 HELIX 21 21 VAL A 471 GLN A 475 5 5 HELIX 22 22 PHE A 531 SER A 536 1 6 HELIX 23 23 SER A 536 MET A 551 1 16 SHEET 1 A 3 ARG A 51 ILE A 58 0 SHEET 2 A 3 GLY A 191 ASP A 198 -1 O LYS A 197 N SER A 52 SHEET 3 A 3 VAL A 203 GLN A 208 -1 O LYS A 205 N LEU A 196 SHEET 1 B 3 ILE A 123 LEU A 129 0 SHEET 2 B 3 PRO A 72 ALA A 84 -1 N THR A 80 O LEU A 129 SHEET 3 B 3 VAL A 145 PHE A 154 -1 O TYR A 146 N TRP A 83 SHEET 1 C 4 ILE A 123 LEU A 129 0 SHEET 2 C 4 PRO A 72 ALA A 84 -1 N THR A 80 O LEU A 129 SHEET 3 C 4 ILE A 65 THR A 66 -1 N ILE A 65 O LEU A 73 SHEET 4 C 4 LEU A 219 ALA A 220 1 O LEU A 219 N THR A 66 SHEET 1 D 5 ILE A 259 GLN A 265 0 SHEET 2 D 5 ALA A 246 ASP A 253 -1 N GLY A 247 O GLN A 265 SHEET 3 D 5 ILE A 516 ASP A 523 -1 O VAL A 521 N SER A 248 SHEET 4 D 5 ALA A 500 ALA A 509 -1 N GLY A 507 O MET A 518 SHEET 5 D 5 ALA A 482 LYS A 490 -1 N ALA A 488 O ARG A 502 SHEET 1 E 2 ILE A 315 ASP A 317 0 SHEET 2 E 2 GLN A 339 ASP A 341 -1 O LEU A 340 N VAL A 316 SHEET 1 F 2 THR A 322 ILE A 325 0 SHEET 2 F 2 TYR A 328 ARG A 331 -1 O TYR A 328 N ILE A 325 SHEET 1 G 2 LYS A 430 SER A 431 0 SHEET 2 G 2 VAL A 446 GLN A 447 -1 O VAL A 446 N SER A 431 LINK C CTJ A 1 OG SER A 294 1555 1555 1.40 CISPEP 1 GLN A 265 PRO A 266 0 -0.90 CISPEP 2 TYR A 319 PRO A 320 0 -0.67 CISPEP 3 ALA A 509 PRO A 510 0 -7.30 SITE 1 AC1 13 GLU A 291 SER A 294 VAL A 333 SER A 349 SITE 2 AC1 13 ASN A 351 LYS A 484 SER A 485 GLY A 486 SITE 3 AC1 13 THR A 487 ALA A 488 ARG A 489 TYR A 501 SITE 4 AC1 13 PHE A 531 CRYST1 67.081 81.812 87.789 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014907 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012223 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011391 0.00000