HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 10-AUG-10 3OD4 TITLE CRYSTAL STRUCTURE OF FACTOR INHIBITING HIF-1 ALPHA COMPLEXED WITH TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYPOXIA-INDUCIBLE FACTOR ASPARAGINE HYDROXYLASE, FACTOR COMPND 5 INHIBITING HIF-1, FIH-1; COMPND 6 EC: 1.14.11.16; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FIH1, HIF1AN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS OXIDOREDUCTASE, ASPARAGINYL HYDROXYLASE, DIOXYGENASE, TRANSCRIPTION, KEYWDS 2 METAL-BINDING, HIF, IRON, HYDROXYLATION, OXYGENASE, NUCLEUS, KEYWDS 3 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.N.F.KING,R.BASHFORD-ROGERS,D.J.MALONEY,A.JADHAV,T.D.HEIGHTMAN, AUTHOR 2 A.SIMEONOV,I.J.CLIFTON,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 2 20-MAR-24 3OD4 1 REMARK LINK REVDAT 1 06-JUL-11 3OD4 0 JRNL AUTH O.N.F.KING,R.BASHFORD-ROGERS,D.J.MALONEY,A.JADHAV, JRNL AUTH 2 T.D.HEIGHTMAN,A.SIMEONOV,I.J.CLIFTON,M.A.MCDONOUGH, JRNL AUTH 3 C.J.SCHOFIELD JRNL TITL CRYSTAL STRUCTURE OF FACTOR INHIBITING HIF-1 ALPHA COMPLEXED JRNL TITL 2 WITH INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6_289 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 28069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6452 - 4.7373 0.99 2947 153 0.1776 0.2018 REMARK 3 2 4.7373 - 3.7611 1.00 2806 144 0.1391 0.1516 REMARK 3 3 3.7611 - 3.2860 0.99 2754 139 0.1593 0.2220 REMARK 3 4 3.2860 - 2.9857 0.99 2698 157 0.1982 0.2461 REMARK 3 5 2.9857 - 2.7717 0.98 2661 159 0.1830 0.2484 REMARK 3 6 2.7717 - 2.6084 0.97 2630 135 0.1818 0.2351 REMARK 3 7 2.6084 - 2.4778 0.96 2589 146 0.1790 0.2071 REMARK 3 8 2.4778 - 2.3699 0.95 2587 147 0.1792 0.2137 REMARK 3 9 2.3699 - 2.2787 0.92 2480 134 0.1991 0.2750 REMARK 3 10 2.2787 - 2.2001 0.91 2473 130 0.2200 0.2669 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 59.06 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.89930 REMARK 3 B22 (A**2) : -2.89930 REMARK 3 B33 (A**2) : 5.79860 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2985 REMARK 3 ANGLE : 1.167 4059 REMARK 3 CHIRALITY : 0.081 401 REMARK 3 PLANARITY : 0.006 537 REMARK 3 DIHEDRAL : 17.085 1104 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 8:24) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3867 27.2119 10.1394 REMARK 3 T TENSOR REMARK 3 T11: 1.2110 T22: 1.0493 REMARK 3 T33: 1.2609 T12: -0.3259 REMARK 3 T13: -0.2581 T23: -0.0484 REMARK 3 L TENSOR REMARK 3 L11: 0.0923 L22: 0.0297 REMARK 3 L33: 0.1070 L12: -0.0542 REMARK 3 L13: 0.0748 L23: -0.0518 REMARK 3 S TENSOR REMARK 3 S11: -0.5216 S12: 0.1936 S13: 0.4771 REMARK 3 S21: 0.3667 S22: -0.5714 S23: 0.2717 REMARK 3 S31: -1.1529 S32: 0.2673 S33: 0.0018 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 25:100) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5620 22.2575 21.0049 REMARK 3 T TENSOR REMARK 3 T11: 0.4447 T22: 0.2217 REMARK 3 T33: 0.3349 T12: -0.0696 REMARK 3 T13: -0.2024 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 1.9657 L22: 4.6282 REMARK 3 L33: 3.2147 L12: 0.3107 REMARK 3 L13: -0.1024 L23: 1.0250 REMARK 3 S TENSOR REMARK 3 S11: -0.1297 S12: -0.1366 S13: -0.0224 REMARK 3 S21: -0.1021 S22: -0.0042 S23: 0.3780 REMARK 3 S31: 0.2494 S32: -0.1319 S33: -0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 101:118) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1988 31.6722 45.5275 REMARK 3 T TENSOR REMARK 3 T11: 1.0350 T22: 0.9823 REMARK 3 T33: 0.8992 T12: 0.0493 REMARK 3 T13: -0.0814 T23: -0.1185 REMARK 3 L TENSOR REMARK 3 L11: 0.1909 L22: 0.0783 REMARK 3 L33: 0.1292 L12: 0.1144 REMARK 3 L13: -0.0816 L23: -0.0175 REMARK 3 S TENSOR REMARK 3 S11: -0.4202 S12: -2.4023 S13: 0.0477 REMARK 3 S21: 0.9067 S22: -0.3062 S23: 1.3283 REMARK 3 S31: -0.1076 S32: -0.9785 S33: -0.0021 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 119:161) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9840 13.7220 36.9301 REMARK 3 T TENSOR REMARK 3 T11: 1.0570 T22: 0.5086 REMARK 3 T33: 0.5288 T12: -0.2129 REMARK 3 T13: 0.0851 T23: 0.1180 REMARK 3 L TENSOR REMARK 3 L11: 1.0408 L22: 1.8045 REMARK 3 L33: 2.6731 L12: 0.8813 REMARK 3 L13: 1.2113 L23: -0.0538 REMARK 3 S TENSOR REMARK 3 S11: -0.1291 S12: -0.5014 S13: -0.1767 REMARK 3 S21: 1.0088 S22: 0.0038 S23: 0.5397 REMARK 3 S31: 1.1622 S32: -0.5137 S33: -0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 162:224) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1207 22.2159 23.2494 REMARK 3 T TENSOR REMARK 3 T11: 0.5150 T22: 0.2070 REMARK 3 T33: 0.3627 T12: -0.0065 REMARK 3 T13: -0.1555 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.3365 L22: 3.4564 REMARK 3 L33: 2.8939 L12: 0.8994 REMARK 3 L13: 0.2900 L23: 1.7524 REMARK 3 S TENSOR REMARK 3 S11: -0.0094 S12: -0.0958 S13: -0.0317 REMARK 3 S21: 0.2296 S22: 0.1686 S23: -0.0708 REMARK 3 S31: 0.1853 S32: 0.2548 S33: -0.0006 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 225:261) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9579 42.4162 32.0792 REMARK 3 T TENSOR REMARK 3 T11: 0.5932 T22: 0.2549 REMARK 3 T33: 0.4077 T12: 0.0028 REMARK 3 T13: -0.1079 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.5306 L22: 1.7618 REMARK 3 L33: 2.1697 L12: 1.1326 REMARK 3 L13: 0.2783 L23: 0.0940 REMARK 3 S TENSOR REMARK 3 S11: 0.0722 S12: -0.1496 S13: 0.0644 REMARK 3 S21: -0.0496 S22: 0.0430 S23: 0.4440 REMARK 3 S31: -0.2597 S32: -0.1410 S33: 0.0002 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 262:306) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8287 26.0236 22.8255 REMARK 3 T TENSOR REMARK 3 T11: 0.4936 T22: 0.1997 REMARK 3 T33: 0.3318 T12: -0.0159 REMARK 3 T13: -0.1233 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.4967 L22: 4.6323 REMARK 3 L33: 4.5420 L12: -0.5312 REMARK 3 L13: -0.0136 L23: 0.7946 REMARK 3 S TENSOR REMARK 3 S11: -0.0627 S12: -0.2225 S13: -0.0845 REMARK 3 S21: -0.1185 S22: 0.1682 S23: -0.1909 REMARK 3 S31: 0.1428 S32: 0.2699 S33: -0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 307:349) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1979 43.2944 35.7837 REMARK 3 T TENSOR REMARK 3 T11: 0.4197 T22: 0.4200 REMARK 3 T33: 0.3791 T12: -0.0035 REMARK 3 T13: -0.0222 T23: -0.0863 REMARK 3 L TENSOR REMARK 3 L11: 3.7422 L22: 3.2154 REMARK 3 L33: 1.3691 L12: 1.1846 REMARK 3 L13: 1.7256 L23: 0.1649 REMARK 3 S TENSOR REMARK 3 S11: 0.0376 S12: -0.0099 S13: -0.2959 REMARK 3 S21: 0.0554 S22: 0.1898 S23: -0.3602 REMARK 3 S31: 0.4648 S32: 0.4040 S33: -0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3OD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97630 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29076 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 74.513 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : 0.69000 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.75M AMMONIUM SULFATE, 0.1M HEPES PH REMARK 280 7.5, 2% PEG 400, 2MM ZNCL2, 0.1MM LIGAND , VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.60000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.20000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.80000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.20000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.40000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.20000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.80000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.20000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.40000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.60000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 86.40000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 86.40000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 73.60000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 397 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 421 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 66 46.31 -140.49 REMARK 500 ARG A 238 -5.38 86.49 REMARK 500 TYR A 276 -9.12 71.29 REMARK 500 PRO A 303 154.13 -49.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1350 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 108.6 REMARK 620 3 8XQ A 350 OAC 113.9 74.8 REMARK 620 4 8XQ A 350 NAI 97.1 150.4 81.5 REMARK 620 5 HOH A 490 O 110.4 95.1 135.5 89.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8XQ A 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 355 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 357 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W0X RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA WITH PYRIDINE 2,4 DICARBOXYLIC ACID REMARK 900 RELATED ID: 1MZF RELATED DB: PDB REMARK 900 HUMAN FACTOR INHIBITING HIF (FIH1) IN COMPLEX WITH 2-OXOGLUTARATE REMARK 900 RELATED ID: 1YCI RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH N-(CARBOXYCARBONYL)-D- REMARK 900 PHENYLALANINE REMARK 900 RELATED ID: 2CGN RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA WITH SUCCINATE REMARK 900 RELATED ID: 2WA3 RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA WITH 2-(3- HYDROXYPHENYL)-2-OXOACETIC REMARK 900 ACID REMARK 900 RELATED ID: 2WA4 RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA WITH N,3- DIHYDROXYBENZAMIDE REMARK 900 RELATED ID: 2CGO RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA WITH FUMARATE REMARK 900 RELATED ID: 1H2K RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1H2L RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1H2M RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1H2N RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE DBREF 3OD4 A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN HET ZN A1350 1 HET 8XQ A 350 14 HET SO4 A 351 5 HET SO4 A 352 5 HET SO4 A 353 5 HET GOL A 354 6 HET GOL A 355 6 HET GOL A 356 6 HET GOL A 357 6 HETNAM ZN ZINC ION HETNAM 8XQ 8-HYDROXYQUINOLINE-5-CARBOXYLIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 8XQ C10 H7 N O3 FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 GOL 4(C3 H8 O3) FORMUL 11 HOH *146(H2 O) HELIX 1 1 ASP A 28 LEU A 32 5 5 HELIX 2 2 ASP A 49 ASN A 58 1 10 HELIX 3 3 VAL A 70 TRP A 76 5 7 HELIX 4 4 ASP A 77 ILE A 85 1 9 HELIX 5 5 ASP A 104 ASN A 110 5 7 HELIX 6 6 PHE A 125 GLY A 139 1 15 HELIX 7 7 GLY A 155 GLY A 164 1 10 HELIX 8 8 ASN A 166 GLY A 178 1 13 HELIX 9 9 PRO A 220 ASP A 222 5 3 HELIX 10 10 GLN A 223 TYR A 228 1 6 HELIX 11 11 PHE A 252 VAL A 258 5 7 HELIX 12 12 LYS A 311 GLY A 331 1 21 HELIX 13 13 ASN A 332 GLN A 334 5 3 HELIX 14 14 GLU A 335 LYS A 345 1 11 SHEET 1 A 2 GLU A 18 GLU A 19 0 SHEET 2 A 2 GLY A 24 PRO A 25 -1 O GLY A 24 N GLU A 19 SHEET 1 B 5 THR A 39 PRO A 41 0 SHEET 2 B 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40 SHEET 3 B 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261 SHEET 4 B 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217 SHEET 5 B 5 VAL A 195 HIS A 199 -1 N THR A 196 O ILE A 281 SHEET 1 C 9 ARG A 44 LEU A 45 0 SHEET 2 C 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 C 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 C 9 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 C 9 THR A 290 TYR A 297 -1 O ILE A 291 N ILE A 210 SHEET 6 C 9 LEU A 182 GLY A 190 -1 N THR A 183 O TRP A 296 SHEET 7 C 9 ARG A 143 THR A 149 -1 N GLN A 148 O LEU A 187 SHEET 8 C 9 ASP A 89 ALA A 95 -1 N TYR A 93 O TYR A 145 SHEET 9 C 9 SER A 118 LYS A 124 -1 O MET A 123 N PHE A 90 LINK NE2 HIS A 199 ZN ZN A1350 1555 1555 2.19 LINK OD2 ASP A 201 ZN ZN A1350 1555 1555 2.04 LINK OAC 8XQ A 350 ZN ZN A1350 1555 1555 2.16 LINK NAI 8XQ A 350 ZN ZN A1350 1555 1555 2.21 LINK O HOH A 490 ZN ZN A1350 1555 1555 2.26 CISPEP 1 ARG A 138 GLY A 139 0 -1.02 CISPEP 2 GLY A 140 GLU A 141 0 3.71 CISPEP 3 TYR A 308 PRO A 309 0 3.19 SITE 1 AC1 5 HIS A 199 ASP A 201 HIS A 279 8XQ A 350 SITE 2 AC1 5 HOH A 490 SITE 1 AC2 12 TYR A 145 LEU A 188 THR A 196 HIS A 199 SITE 2 AC2 12 ASP A 201 PHE A 207 LYS A 214 HIS A 279 SITE 3 AC2 12 ILE A 281 ASN A 294 TRP A 296 ZN A1350 SITE 1 AC3 4 ARG A 138 GLY A 140 GLU A 141 GLU A 142 SITE 1 AC4 3 LYS A 107 ARG A 320 LYS A 324 SITE 1 AC5 5 ARG A 143 GLU A 192 GLY A 193 LEU A 285 SITE 2 AC5 5 ASN A 286 SITE 1 AC6 4 LEU A 150 ASN A 151 PHE A 162 HOH A 496 SITE 1 AC7 5 ASP A 201 GLN A 203 HOH A 433 HOH A 435 SITE 2 AC7 5 HOH A 490 SITE 1 AC8 4 TYR A 230 SER A 240 GLN A 241 HOH A 376 SITE 1 AC9 2 GLN A 148 ASN A 151 CRYST1 86.400 86.400 147.200 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011574 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011574 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006793 0.00000