data_3ODC # _entry.id 3ODC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3ODC pdb_00003odc 10.2210/pdb3odc/pdb NDB NA0657 ? ? RCSB RCSB060972 ? ? WWPDB D_1000060972 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-01-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' 10 4 'Structure model' '_database_2.pdbx_DOI' 11 4 'Structure model' '_database_2.pdbx_database_accession' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 25 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 26 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 27 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 28 4 'Structure model' '_pdbx_struct_conn_angle.value' 29 4 'Structure model' '_struct_conn.pdbx_dist_value' 30 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 31 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 32 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 35 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 36 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 37 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 39 4 'Structure model' '_struct_ref_seq_dif.details' 40 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 41 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 42 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3ODC _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-08-11 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3OD8 'Human PARP-1 zinc finger 1 (Zn1) bound to DNA' unspecified PDB 3ODA 'Human PARP-1 zinc finger 2 (Zn2) bound to DNA' unspecified PDB 3ODE 'Human PARP-1 zinc finger 2 (Zn2) bound to DNA' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pascal, J.M.' 1 'Langelier, M.-F.' 2 # _citation.id primary _citation.title ;Crystal Structures of Poly(ADP-ribose) Polymerase-1 (PARP-1) Zinc Fingers Bound to DNA: STRUCTURAL AND FUNCTIONAL INSIGHTS INTO DNA-DEPENDENT PARP-1 ACTIVITY. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 286 _citation.page_first 10690 _citation.page_last 10701 _citation.year 2011 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21233213 _citation.pdbx_database_id_DOI 10.1074/jbc.M110.202507 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Langelier, M.F.' 1 ? primary 'Planck, J.L.' 2 ? primary 'Roy, S.' 3 ? primary 'Pascal, J.M.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Poly [ADP-ribose] polymerase 1' 12721.641 2 2.4.2.30 ? 'PARP-1 zinc finger 2, Zn2, UNP residues 105-206' ? 2 polymer syn "5'-D(*CP*CP*CP*AP*GP*AP*CP*G)-3'" 2396.595 2 ? ? ? ? 3 polymer syn "5'-D(*CP*GP*TP*CP*TP*GP*GP*G)-3'" 2458.615 2 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 5 water nat water 18.015 39 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PARP-1, NAD(+) ADP-ribosyltransferase 1, ADPRT 1, Poly[ADP-ribose] synthase 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVKNREELGFRPEYSASQLKG FSLLATEDKEALKKQLPGVKSEGLEHHHHHH ; ;MKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVKNREELGFRPEYSASQLKG FSLLATEDKEALKKQLPGVKSEGLEHHHHHH ; A,B ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DC)(DA)(DG)(DA)(DC)(DG)' CCCAGACG C,E ? 3 polydeoxyribonucleotide no no '(DC)(DG)(DT)(DC)(DT)(DG)(DG)(DG)' CGTCTGGG D,F ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 ALA n 1 4 GLU n 1 5 LYS n 1 6 THR n 1 7 LEU n 1 8 GLY n 1 9 ASP n 1 10 PHE n 1 11 ALA n 1 12 ALA n 1 13 GLU n 1 14 TYR n 1 15 ALA n 1 16 LYS n 1 17 SER n 1 18 ASN n 1 19 ARG n 1 20 SER n 1 21 THR n 1 22 CYS n 1 23 LYS n 1 24 GLY n 1 25 CYS n 1 26 MET n 1 27 GLU n 1 28 LYS n 1 29 ILE n 1 30 GLU n 1 31 LYS n 1 32 GLY n 1 33 GLN n 1 34 VAL n 1 35 ARG n 1 36 LEU n 1 37 SER n 1 38 LYS n 1 39 LYS n 1 40 MET n 1 41 VAL n 1 42 ASP n 1 43 PRO n 1 44 GLU n 1 45 LYS n 1 46 PRO n 1 47 GLN n 1 48 LEU n 1 49 GLY n 1 50 MET n 1 51 ILE n 1 52 ASP n 1 53 ARG n 1 54 TRP n 1 55 TYR n 1 56 HIS n 1 57 PRO n 1 58 GLY n 1 59 CYS n 1 60 PHE n 1 61 VAL n 1 62 LYS n 1 63 ASN n 1 64 ARG n 1 65 GLU n 1 66 GLU n 1 67 LEU n 1 68 GLY n 1 69 PHE n 1 70 ARG n 1 71 PRO n 1 72 GLU n 1 73 TYR n 1 74 SER n 1 75 ALA n 1 76 SER n 1 77 GLN n 1 78 LEU n 1 79 LYS n 1 80 GLY n 1 81 PHE n 1 82 SER n 1 83 LEU n 1 84 LEU n 1 85 ALA n 1 86 THR n 1 87 GLU n 1 88 ASP n 1 89 LYS n 1 90 GLU n 1 91 ALA n 1 92 LEU n 1 93 LYS n 1 94 LYS n 1 95 GLN n 1 96 LEU n 1 97 PRO n 1 98 GLY n 1 99 VAL n 1 100 LYS n 1 101 SER n 1 102 GLU n 1 103 GLY n 1 104 LEU n 1 105 GLU n 1 106 HIS n 1 107 HIS n 1 108 HIS n 1 109 HIS n 1 110 HIS n 1 111 HIS n 2 1 DC n 2 2 DC n 2 3 DC n 2 4 DA n 2 5 DG n 2 6 DA n 2 7 DC n 2 8 DG n 3 1 DC n 3 2 DG n 3 3 DT n 3 4 DC n 3 5 DT n 3 6 DG n 3 7 DG n 3 8 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ADPRT, PARP1, PPOL' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) Rosetta2' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET24 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'Chemically synthesized DNA' 3 1 sample ? ? ? ? ? 'Chemically synthesized DNA' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 104 ? ? ? A . n A 1 2 LYS 2 105 ? ? ? A . n A 1 3 ALA 3 106 ? ? ? A . n A 1 4 GLU 4 107 ? ? ? A . n A 1 5 LYS 5 108 ? ? ? A . n A 1 6 THR 6 109 109 THR THR A . n A 1 7 LEU 7 110 110 LEU LEU A . n A 1 8 GLY 8 111 111 GLY GLY A . n A 1 9 ASP 9 112 112 ASP ASP A . n A 1 10 PHE 10 113 113 PHE PHE A . n A 1 11 ALA 11 114 114 ALA ALA A . n A 1 12 ALA 12 115 115 ALA ALA A . n A 1 13 GLU 13 116 116 GLU GLU A . n A 1 14 TYR 14 117 117 TYR TYR A . n A 1 15 ALA 15 118 118 ALA ALA A . n A 1 16 LYS 16 119 119 LYS LYS A . n A 1 17 SER 17 120 120 SER SER A . n A 1 18 ASN 18 121 121 ASN ASN A . n A 1 19 ARG 19 122 122 ARG ARG A . n A 1 20 SER 20 123 123 SER SER A . n A 1 21 THR 21 124 124 THR THR A . n A 1 22 CYS 22 125 125 CYS CYS A . n A 1 23 LYS 23 126 126 LYS LYS A . n A 1 24 GLY 24 127 127 GLY GLY A . n A 1 25 CYS 25 128 128 CYS CYS A . n A 1 26 MET 26 129 129 MET MET A . n A 1 27 GLU 27 130 130 GLU GLU A . n A 1 28 LYS 28 131 131 LYS LYS A . n A 1 29 ILE 29 132 132 ILE ILE A . n A 1 30 GLU 30 133 133 GLU GLU A . n A 1 31 LYS 31 134 134 LYS LYS A . n A 1 32 GLY 32 135 135 GLY GLY A . n A 1 33 GLN 33 136 136 GLN GLN A . n A 1 34 VAL 34 137 137 VAL VAL A . n A 1 35 ARG 35 138 138 ARG ARG A . n A 1 36 LEU 36 139 139 LEU LEU A . n A 1 37 SER 37 140 140 SER SER A . n A 1 38 LYS 38 141 141 LYS LYS A . n A 1 39 LYS 39 142 142 LYS LYS A . n A 1 40 MET 40 143 143 MET MET A . n A 1 41 VAL 41 144 144 VAL VAL A . n A 1 42 ASP 42 145 145 ASP ASP A . n A 1 43 PRO 43 146 146 PRO PRO A . n A 1 44 GLU 44 147 147 GLU GLU A . n A 1 45 LYS 45 148 148 LYS LYS A . n A 1 46 PRO 46 149 149 PRO PRO A . n A 1 47 GLN 47 150 150 GLN GLN A . n A 1 48 LEU 48 151 151 LEU LEU A . n A 1 49 GLY 49 152 152 GLY GLY A . n A 1 50 MET 50 153 153 MET MET A . n A 1 51 ILE 51 154 154 ILE ILE A . n A 1 52 ASP 52 155 155 ASP ASP A . n A 1 53 ARG 53 156 156 ARG ARG A . n A 1 54 TRP 54 157 157 TRP TRP A . n A 1 55 TYR 55 158 158 TYR TYR A . n A 1 56 HIS 56 159 159 HIS HIS A . n A 1 57 PRO 57 160 160 PRO PRO A . n A 1 58 GLY 58 161 161 GLY GLY A . n A 1 59 CYS 59 162 162 CYS CYS A . n A 1 60 PHE 60 163 163 PHE PHE A . n A 1 61 VAL 61 164 164 VAL VAL A . n A 1 62 LYS 62 165 165 LYS LYS A . n A 1 63 ASN 63 166 166 ASN ASN A . n A 1 64 ARG 64 167 167 ARG ARG A . n A 1 65 GLU 65 168 168 GLU GLU A . n A 1 66 GLU 66 169 169 GLU GLU A . n A 1 67 LEU 67 170 170 LEU LEU A . n A 1 68 GLY 68 171 171 GLY GLY A . n A 1 69 PHE 69 172 172 PHE PHE A . n A 1 70 ARG 70 173 173 ARG ARG A . n A 1 71 PRO 71 174 174 PRO PRO A . n A 1 72 GLU 72 175 175 GLU GLU A . n A 1 73 TYR 73 176 176 TYR TYR A . n A 1 74 SER 74 177 177 SER SER A . n A 1 75 ALA 75 178 178 ALA ALA A . n A 1 76 SER 76 179 179 SER SER A . n A 1 77 GLN 77 180 180 GLN GLN A . n A 1 78 LEU 78 181 181 LEU LEU A . n A 1 79 LYS 79 182 182 LYS LYS A . n A 1 80 GLY 80 183 183 GLY GLY A . n A 1 81 PHE 81 184 184 PHE PHE A . n A 1 82 SER 82 185 185 SER SER A . n A 1 83 LEU 83 186 186 LEU LEU A . n A 1 84 LEU 84 187 187 LEU LEU A . n A 1 85 ALA 85 188 188 ALA ALA A . n A 1 86 THR 86 189 189 THR THR A . n A 1 87 GLU 87 190 190 GLU GLU A . n A 1 88 ASP 88 191 191 ASP ASP A . n A 1 89 LYS 89 192 192 LYS LYS A . n A 1 90 GLU 90 193 193 GLU GLU A . n A 1 91 ALA 91 194 194 ALA ALA A . n A 1 92 LEU 92 195 195 LEU LEU A . n A 1 93 LYS 93 196 196 LYS LYS A . n A 1 94 LYS 94 197 197 LYS LYS A . n A 1 95 GLN 95 198 198 GLN GLN A . n A 1 96 LEU 96 199 199 LEU LEU A . n A 1 97 PRO 97 200 200 PRO PRO A . n A 1 98 GLY 98 201 201 GLY GLY A . n A 1 99 VAL 99 202 ? ? ? A . n A 1 100 LYS 100 203 ? ? ? A . n A 1 101 SER 101 204 ? ? ? A . n A 1 102 GLU 102 205 ? ? ? A . n A 1 103 GLY 103 206 ? ? ? A . n A 1 104 LEU 104 207 ? ? ? A . n A 1 105 GLU 105 208 ? ? ? A . n A 1 106 HIS 106 209 ? ? ? A . n A 1 107 HIS 107 210 ? ? ? A . n A 1 108 HIS 108 211 ? ? ? A . n A 1 109 HIS 109 212 ? ? ? A . n A 1 110 HIS 110 213 ? ? ? A . n A 1 111 HIS 111 214 ? ? ? A . n B 1 1 MET 1 104 104 MET MET B . n B 1 2 LYS 2 105 105 LYS LYS B . n B 1 3 ALA 3 106 106 ALA ALA B . n B 1 4 GLU 4 107 107 GLU GLU B . n B 1 5 LYS 5 108 108 LYS LYS B . n B 1 6 THR 6 109 109 THR THR B . n B 1 7 LEU 7 110 110 LEU LEU B . n B 1 8 GLY 8 111 111 GLY GLY B . n B 1 9 ASP 9 112 112 ASP ASP B . n B 1 10 PHE 10 113 113 PHE PHE B . n B 1 11 ALA 11 114 114 ALA ALA B . n B 1 12 ALA 12 115 115 ALA ALA B . n B 1 13 GLU 13 116 116 GLU GLU B . n B 1 14 TYR 14 117 117 TYR TYR B . n B 1 15 ALA 15 118 118 ALA ALA B . n B 1 16 LYS 16 119 119 LYS LYS B . n B 1 17 SER 17 120 120 SER SER B . n B 1 18 ASN 18 121 121 ASN ASN B . n B 1 19 ARG 19 122 122 ARG ARG B . n B 1 20 SER 20 123 123 SER SER B . n B 1 21 THR 21 124 124 THR THR B . n B 1 22 CYS 22 125 125 CYS CYS B . n B 1 23 LYS 23 126 126 LYS LYS B . n B 1 24 GLY 24 127 127 GLY GLY B . n B 1 25 CYS 25 128 128 CYS CYS B . n B 1 26 MET 26 129 129 MET MET B . n B 1 27 GLU 27 130 130 GLU GLU B . n B 1 28 LYS 28 131 131 LYS LYS B . n B 1 29 ILE 29 132 132 ILE ILE B . n B 1 30 GLU 30 133 133 GLU GLU B . n B 1 31 LYS 31 134 134 LYS LYS B . n B 1 32 GLY 32 135 135 GLY GLY B . n B 1 33 GLN 33 136 136 GLN GLN B . n B 1 34 VAL 34 137 137 VAL VAL B . n B 1 35 ARG 35 138 138 ARG ARG B . n B 1 36 LEU 36 139 139 LEU LEU B . n B 1 37 SER 37 140 140 SER SER B . n B 1 38 LYS 38 141 141 LYS LYS B . n B 1 39 LYS 39 142 142 LYS LYS B . n B 1 40 MET 40 143 143 MET MET B . n B 1 41 VAL 41 144 144 VAL VAL B . n B 1 42 ASP 42 145 145 ASP ASP B . n B 1 43 PRO 43 146 146 PRO PRO B . n B 1 44 GLU 44 147 147 GLU GLU B . n B 1 45 LYS 45 148 148 LYS LYS B . n B 1 46 PRO 46 149 149 PRO PRO B . n B 1 47 GLN 47 150 150 GLN GLN B . n B 1 48 LEU 48 151 151 LEU LEU B . n B 1 49 GLY 49 152 152 GLY GLY B . n B 1 50 MET 50 153 153 MET MET B . n B 1 51 ILE 51 154 154 ILE ILE B . n B 1 52 ASP 52 155 155 ASP ASP B . n B 1 53 ARG 53 156 156 ARG ARG B . n B 1 54 TRP 54 157 157 TRP TRP B . n B 1 55 TYR 55 158 158 TYR TYR B . n B 1 56 HIS 56 159 159 HIS HIS B . n B 1 57 PRO 57 160 160 PRO PRO B . n B 1 58 GLY 58 161 161 GLY GLY B . n B 1 59 CYS 59 162 162 CYS CYS B . n B 1 60 PHE 60 163 163 PHE PHE B . n B 1 61 VAL 61 164 164 VAL VAL B . n B 1 62 LYS 62 165 165 LYS LYS B . n B 1 63 ASN 63 166 166 ASN ASN B . n B 1 64 ARG 64 167 167 ARG ARG B . n B 1 65 GLU 65 168 168 GLU GLU B . n B 1 66 GLU 66 169 169 GLU GLU B . n B 1 67 LEU 67 170 170 LEU LEU B . n B 1 68 GLY 68 171 171 GLY GLY B . n B 1 69 PHE 69 172 172 PHE PHE B . n B 1 70 ARG 70 173 173 ARG ARG B . n B 1 71 PRO 71 174 174 PRO PRO B . n B 1 72 GLU 72 175 175 GLU GLU B . n B 1 73 TYR 73 176 176 TYR TYR B . n B 1 74 SER 74 177 177 SER SER B . n B 1 75 ALA 75 178 178 ALA ALA B . n B 1 76 SER 76 179 179 SER SER B . n B 1 77 GLN 77 180 180 GLN GLN B . n B 1 78 LEU 78 181 181 LEU LEU B . n B 1 79 LYS 79 182 182 LYS LYS B . n B 1 80 GLY 80 183 183 GLY GLY B . n B 1 81 PHE 81 184 184 PHE PHE B . n B 1 82 SER 82 185 185 SER SER B . n B 1 83 LEU 83 186 186 LEU LEU B . n B 1 84 LEU 84 187 187 LEU LEU B . n B 1 85 ALA 85 188 188 ALA ALA B . n B 1 86 THR 86 189 189 THR THR B . n B 1 87 GLU 87 190 190 GLU GLU B . n B 1 88 ASP 88 191 191 ASP ASP B . n B 1 89 LYS 89 192 192 LYS LYS B . n B 1 90 GLU 90 193 193 GLU GLU B . n B 1 91 ALA 91 194 194 ALA ALA B . n B 1 92 LEU 92 195 195 LEU LEU B . n B 1 93 LYS 93 196 196 LYS LYS B . n B 1 94 LYS 94 197 197 LYS LYS B . n B 1 95 GLN 95 198 198 GLN GLN B . n B 1 96 LEU 96 199 199 LEU LEU B . n B 1 97 PRO 97 200 200 PRO PRO B . n B 1 98 GLY 98 201 201 GLY GLY B . n B 1 99 VAL 99 202 202 VAL VAL B . n B 1 100 LYS 100 203 203 LYS LYS B . n B 1 101 SER 101 204 ? ? ? B . n B 1 102 GLU 102 205 ? ? ? B . n B 1 103 GLY 103 206 ? ? ? B . n B 1 104 LEU 104 207 ? ? ? B . n B 1 105 GLU 105 208 ? ? ? B . n B 1 106 HIS 106 209 ? ? ? B . n B 1 107 HIS 107 210 ? ? ? B . n B 1 108 HIS 108 211 ? ? ? B . n B 1 109 HIS 109 212 ? ? ? B . n B 1 110 HIS 110 213 ? ? ? B . n B 1 111 HIS 111 214 ? ? ? B . n C 2 1 DC 1 1 1 DC DC C . n C 2 2 DC 2 2 2 DC DC C . n C 2 3 DC 3 3 3 DC DC C . n C 2 4 DA 4 4 4 DA DA C . n C 2 5 DG 5 5 5 DG DG C . n C 2 6 DA 6 6 6 DA DA C . n C 2 7 DC 7 7 7 DC DC C . n C 2 8 DG 8 8 8 DG DG C . n D 3 1 DC 1 1 1 DC DC D . n D 3 2 DG 2 2 2 DG DG D . n D 3 3 DT 3 3 3 DT DT D . n D 3 4 DC 4 4 4 DC DC D . n D 3 5 DT 5 5 5 DT DT D . n D 3 6 DG 6 6 6 DG DG D . n D 3 7 DG 7 7 7 DG DG D . n D 3 8 DG 8 8 8 DG DG D . n E 2 1 DC 1 1 1 DC DC E . n E 2 2 DC 2 2 2 DC DC E . n E 2 3 DC 3 3 3 DC DC E . n E 2 4 DA 4 4 4 DA DA E . n E 2 5 DG 5 5 5 DG DG E . n E 2 6 DA 6 6 6 DA DA E . n E 2 7 DC 7 7 7 DC DC E . n E 2 8 DG 8 8 8 DG DG E . n F 3 1 DC 1 1 1 DC DC F . n F 3 2 DG 2 2 2 DG DG F . n F 3 3 DT 3 3 3 DT DT F . n F 3 4 DC 4 4 4 DC DC F . n F 3 5 DT 5 5 5 DT DT F . n F 3 6 DG 6 6 6 DG DG F . n F 3 7 DG 7 7 7 DG DG F . n F 3 8 DG 8 8 8 DG DG F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ZN 1 701 701 ZN ZN A . H 4 ZN 1 701 701 ZN ZN B . I 5 HOH 1 2 2 HOH HOH A . I 5 HOH 2 3 3 HOH HOH A . I 5 HOH 3 7 7 HOH HOH A . I 5 HOH 4 13 13 HOH HOH A . I 5 HOH 5 15 15 HOH HOH A . I 5 HOH 6 17 17 HOH HOH A . I 5 HOH 7 21 21 HOH HOH A . I 5 HOH 8 27 27 HOH HOH A . I 5 HOH 9 30 30 HOH HOH A . I 5 HOH 10 31 31 HOH HOH A . I 5 HOH 11 34 34 HOH HOH A . I 5 HOH 12 35 35 HOH HOH A . I 5 HOH 13 36 36 HOH HOH A . J 5 HOH 1 1 1 HOH HOH B . J 5 HOH 2 4 4 HOH HOH B . J 5 HOH 3 5 5 HOH HOH B . J 5 HOH 4 8 8 HOH HOH B . J 5 HOH 5 9 9 HOH HOH B . J 5 HOH 6 10 10 HOH HOH B . J 5 HOH 7 11 11 HOH HOH B . J 5 HOH 8 12 12 HOH HOH B . J 5 HOH 9 14 14 HOH HOH B . J 5 HOH 10 19 19 HOH HOH B . J 5 HOH 11 20 20 HOH HOH B . J 5 HOH 12 22 22 HOH HOH B . J 5 HOH 13 24 24 HOH HOH B . J 5 HOH 14 28 28 HOH HOH B . J 5 HOH 15 32 32 HOH HOH B . J 5 HOH 16 33 33 HOH HOH B . J 5 HOH 17 39 39 HOH HOH B . K 5 HOH 1 16 16 HOH HOH C . K 5 HOH 2 23 23 HOH HOH C . K 5 HOH 3 25 25 HOH HOH C . K 5 HOH 4 29 29 HOH HOH C . K 5 HOH 5 38 38 HOH HOH C . L 5 HOH 1 26 26 HOH HOH D . M 5 HOH 1 18 18 HOH HOH E . M 5 HOH 2 37 37 HOH HOH E . N 5 HOH 1 9 6 HOH HOH F . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B LYS 105 ? CG ? B LYS 2 CG 2 1 Y 1 B LYS 105 ? CD ? B LYS 2 CD 3 1 Y 1 B LYS 105 ? CE ? B LYS 2 CE 4 1 Y 1 B LYS 105 ? NZ ? B LYS 2 NZ 5 1 Y 1 B GLU 107 ? CG ? B GLU 4 CG 6 1 Y 1 B GLU 107 ? CD ? B GLU 4 CD 7 1 Y 1 B GLU 107 ? OE1 ? B GLU 4 OE1 8 1 Y 1 B GLU 107 ? OE2 ? B GLU 4 OE2 9 1 Y 1 B LYS 108 ? CG ? B LYS 5 CG 10 1 Y 1 B LYS 108 ? CD ? B LYS 5 CD 11 1 Y 1 B LYS 108 ? CE ? B LYS 5 CE 12 1 Y 1 B LYS 108 ? NZ ? B LYS 5 NZ 13 1 Y 1 B LYS 203 ? CG ? B LYS 100 CG 14 1 Y 1 B LYS 203 ? CD ? B LYS 100 CD 15 1 Y 1 B LYS 203 ? CE ? B LYS 100 CE 16 1 Y 1 B LYS 203 ? NZ ? B LYS 100 NZ # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHENIX 1.6.2_432 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 CBASS . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 SOLVE . ? ? ? ? phasing ? ? ? # _cell.length_a 63.731 _cell.length_b 63.731 _cell.length_c 192.405 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3ODC _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.entry_id 3ODC _symmetry.Int_Tables_number 152 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3ODC _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.21 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 61.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '1.36-1.42 M sodium citrate pH 6.5, vapor diffusion, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.pdbx_collection_date 2009-09-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'silicon(111) crystal' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.99 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_wavelength_list 0.99 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C # _reflns.entry_id 3ODC _reflns.d_resolution_high 2.800 _reflns.d_resolution_low 50.000 _reflns.number_obs 11845 _reflns.pdbx_Rmerge_I_obs 0.092 _reflns.pdbx_netI_over_sigmaI 8.300 _reflns.pdbx_chi_squared 1.000 _reflns.pdbx_redundancy 8.100 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.800 2.850 ? ? ? 0.717 ? ? 0.982 8.200 ? 571 100.000 ? 1 2.850 2.900 ? ? ? 0.625 ? ? 0.992 7.900 ? 602 100.000 ? 2 2.900 2.960 ? ? ? 0.639 ? ? 0.986 8.300 ? 552 100.000 ? 3 2.960 3.020 ? ? ? 0.459 ? ? 0.950 8.200 ? 585 100.000 ? 4 3.020 3.080 ? ? ? 0.385 ? ? 1.020 8.200 ? 582 100.000 ? 5 3.080 3.150 ? ? ? 0.308 ? ? 0.973 8.200 ? 580 100.000 ? 6 3.150 3.230 ? ? ? 0.212 ? ? 0.979 8.200 ? 572 100.000 ? 7 3.230 3.320 ? ? ? 0.163 ? ? 1.021 8.300 ? 580 100.000 ? 8 3.320 3.420 ? ? ? 0.129 ? ? 1.034 8.200 ? 571 100.000 ? 9 3.420 3.530 ? ? ? 0.113 ? ? 0.974 8.100 ? 597 100.000 ? 10 3.530 3.650 ? ? ? 0.100 ? ? 1.012 8.300 ? 579 100.000 ? 11 3.650 3.800 ? ? ? 0.097 ? ? 0.991 8.200 ? 590 100.000 ? 12 3.800 3.970 ? ? ? 0.087 ? ? 0.986 8.100 ? 595 100.000 ? 13 3.970 4.180 ? ? ? 0.067 ? ? 1.025 8.300 ? 573 100.000 ? 14 4.180 4.440 ? ? ? 0.063 ? ? 0.996 8.200 ? 594 100.000 ? 15 4.440 4.790 ? ? ? 0.060 ? ? 1.008 8.100 ? 604 100.000 ? 16 4.790 5.270 ? ? ? 0.056 ? ? 1.030 8.100 ? 604 100.000 ? 17 5.270 6.030 ? ? ? 0.054 ? ? 0.996 8.100 ? 606 100.000 ? 18 6.030 7.590 ? ? ? 0.052 ? ? 1.027 7.900 ? 622 100.000 ? 19 7.590 50.000 ? ? ? 0.036 ? ? 1.008 7.100 ? 686 98.700 ? 20 # _refine.entry_id 3ODC _refine.ls_d_res_high 2.8000 _refine.ls_d_res_low 36.2620 _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.9300 _refine.ls_number_reflns_obs 11798 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1950 _refine.ls_R_factor_R_work 0.1927 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2398 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.7100 _refine.ls_number_reflns_R_free 556 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 48.3666 _refine.solvent_model_param_bsol 34.6980 _refine.solvent_model_param_ksol 0.3370 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.5071 _refine.aniso_B[2][2] -0.5071 _refine.aniso_B[3][3] 1.0142 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.3500 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8113 _refine.B_iso_max 96.760 _refine.B_iso_min 26.780 _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1514 _refine_hist.pdbx_number_atoms_nucleic_acid 644 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 39 _refine_hist.number_atoms_total 2199 _refine_hist.d_res_high 2.8000 _refine_hist.d_res_low 36.2620 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 2277 0.010 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 3173 1.305 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 337 0.071 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 300 0.005 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 917 24.867 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.8001 3.0818 4 100.0000 2760 . 0.2864 0.3468 . 128 . 2888 . . 'X-RAY DIFFRACTION' 3.0818 3.5274 4 100.0000 2746 . 0.2100 0.2636 . 145 . 2891 . . 'X-RAY DIFFRACTION' 3.5274 4.4429 4 100.0000 2784 . 0.1709 0.2238 . 141 . 2925 . . 'X-RAY DIFFRACTION' 4.4429 36.2655 4 100.0000 2952 . 0.1765 0.2122 . 142 . 3094 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3ODC _struct.title 'Human PARP-1 zinc finger 2 (Zn2) bound to DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ODC _struct_keywords.text 'protein-DNA complex, PARP zinc finger, DNA BINDING PROTEIN-DNA complex' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 5 ? M N N 5 ? N N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PARP1_HUMAN P09874 1 ;KAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVKNREELGFRPEYSASQLKGF SLLATEDKEALKKQLPGVKSEG ; 105 ? 2 PDB 3ODC 3ODC 2 CCCAGACG ? ? 3 PDB 3ODC 3ODC 3 CGTCTGGG ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3ODC A 2 ? 103 ? P09874 105 ? 206 ? 105 206 2 1 3ODC B 2 ? 103 ? P09874 105 ? 206 ? 105 206 3 2 3ODC C 1 ? 8 ? 3ODC 1 ? 8 ? 1 8 4 2 3ODC E 1 ? 8 ? 3ODC 1 ? 8 ? 1 8 5 3 3ODC D 1 ? 8 ? 3ODC 1 ? 8 ? 1 8 6 3 3ODC F 1 ? 8 ? 3ODC 1 ? 8 ? 1 8 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3ODC MET A 1 ? UNP P09874 ? ? 'expression tag' 104 1 1 3ODC LEU A 104 ? UNP P09874 ? ? 'expression tag' 207 2 1 3ODC GLU A 105 ? UNP P09874 ? ? 'expression tag' 208 3 1 3ODC HIS A 106 ? UNP P09874 ? ? 'expression tag' 209 4 1 3ODC HIS A 107 ? UNP P09874 ? ? 'expression tag' 210 5 1 3ODC HIS A 108 ? UNP P09874 ? ? 'expression tag' 211 6 1 3ODC HIS A 109 ? UNP P09874 ? ? 'expression tag' 212 7 1 3ODC HIS A 110 ? UNP P09874 ? ? 'expression tag' 213 8 1 3ODC HIS A 111 ? UNP P09874 ? ? 'expression tag' 214 9 2 3ODC MET B 1 ? UNP P09874 ? ? 'expression tag' 104 10 2 3ODC LEU B 104 ? UNP P09874 ? ? 'expression tag' 207 11 2 3ODC GLU B 105 ? UNP P09874 ? ? 'expression tag' 208 12 2 3ODC HIS B 106 ? UNP P09874 ? ? 'expression tag' 209 13 2 3ODC HIS B 107 ? UNP P09874 ? ? 'expression tag' 210 14 2 3ODC HIS B 108 ? UNP P09874 ? ? 'expression tag' 211 15 2 3ODC HIS B 109 ? UNP P09874 ? ? 'expression tag' 212 16 2 3ODC HIS B 110 ? UNP P09874 ? ? 'expression tag' 213 17 2 3ODC HIS B 111 ? UNP P09874 ? ? 'expression tag' 214 18 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? trimeric 3 2 author_defined_assembly ? trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,G,I,K,L 2 1 B,E,F,H,J,M,N # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 56 ? ASN A 63 ? HIS A 159 ASN A 166 1 ? 8 HELX_P HELX_P2 2 ASN A 63 ? GLY A 68 ? ASN A 166 GLY A 171 1 ? 6 HELX_P HELX_P3 3 TYR A 73 ? SER A 76 ? TYR A 176 SER A 179 5 ? 4 HELX_P HELX_P4 4 GLY A 80 ? LEU A 84 ? GLY A 183 LEU A 187 5 ? 5 HELX_P HELX_P5 5 ALA A 85 ? LEU A 96 ? ALA A 188 LEU A 199 1 ? 12 HELX_P HELX_P6 6 LYS B 45 ? GLY B 49 ? LYS B 148 GLY B 152 5 ? 5 HELX_P HELX_P7 7 HIS B 56 ? ASN B 63 ? HIS B 159 ASN B 166 1 ? 8 HELX_P HELX_P8 8 SER B 74 ? LEU B 78 ? SER B 177 LEU B 181 5 ? 5 HELX_P HELX_P9 9 GLY B 80 ? LEU B 84 ? GLY B 183 LEU B 187 5 ? 5 HELX_P HELX_P10 10 ALA B 85 ? LEU B 96 ? ALA B 188 LEU B 199 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 22 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 125 A ZN 701 1_555 ? ? ? ? ? ? ? 2.275 ? ? metalc2 metalc ? ? A CYS 25 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 128 A ZN 701 1_555 ? ? ? ? ? ? ? 2.177 ? ? metalc3 metalc ? ? A HIS 56 ND1 ? ? ? 1_555 G ZN . ZN ? ? A HIS 159 A ZN 701 1_555 ? ? ? ? ? ? ? 2.115 ? ? metalc4 metalc ? ? A CYS 59 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 162 A ZN 701 1_555 ? ? ? ? ? ? ? 2.210 ? ? metalc5 metalc ? ? B CYS 22 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 125 B ZN 701 1_555 ? ? ? ? ? ? ? 2.304 ? ? metalc6 metalc ? ? B CYS 25 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 128 B ZN 701 1_555 ? ? ? ? ? ? ? 2.207 ? ? metalc7 metalc ? ? B HIS 56 ND1 ? ? ? 1_555 H ZN . ZN ? ? B HIS 159 B ZN 701 1_555 ? ? ? ? ? ? ? 2.106 ? ? metalc8 metalc ? ? B CYS 59 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 162 B ZN 701 1_555 ? ? ? ? ? ? ? 2.223 ? ? hydrog1 hydrog ? ? C DC 1 N3 ? ? ? 1_555 D DG 8 N1 ? ? C DC 1 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DC 1 N4 ? ? ? 1_555 D DG 8 O6 ? ? C DC 1 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DC 1 O2 ? ? ? 1_555 D DG 8 N2 ? ? C DC 1 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 7 N1 ? ? C DC 2 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 7 O6 ? ? C DC 2 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 7 N2 ? ? C DC 2 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DC 3 N3 ? ? ? 1_555 D DG 6 N1 ? ? C DC 3 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DC 3 N4 ? ? ? 1_555 D DG 6 O6 ? ? C DC 3 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DC 3 O2 ? ? ? 1_555 D DG 6 N2 ? ? C DC 3 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 5 N3 ? ? C DA 4 D DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 5 O4 ? ? C DA 4 D DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DC 4 N3 ? ? C DG 5 D DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DC 4 O2 ? ? C DG 5 D DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DC 4 N4 ? ? C DG 5 D DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DA 6 N1 ? ? ? 1_555 D DT 3 N3 ? ? C DA 6 D DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DA 6 N6 ? ? ? 1_555 D DT 3 O4 ? ? C DA 6 D DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 7 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 7 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 7 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DG 8 N1 ? ? ? 1_555 D DC 1 N3 ? ? C DG 8 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DG 8 N2 ? ? ? 1_555 D DC 1 O2 ? ? C DG 8 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DG 8 O6 ? ? ? 1_555 D DC 1 N4 ? ? C DG 8 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? E DC 1 N3 ? ? ? 1_555 F DG 8 N1 ? ? E DC 1 F DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? E DC 1 N4 ? ? ? 1_555 F DG 8 O6 ? ? E DC 1 F DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? E DC 1 O2 ? ? ? 1_555 F DG 8 N2 ? ? E DC 1 F DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? E DC 2 N3 ? ? ? 1_555 F DG 7 N1 ? ? E DC 2 F DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? E DC 2 N4 ? ? ? 1_555 F DG 7 O6 ? ? E DC 2 F DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? E DC 2 O2 ? ? ? 1_555 F DG 7 N2 ? ? E DC 2 F DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? E DC 3 N3 ? ? ? 1_555 F DG 6 N1 ? ? E DC 3 F DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? E DC 3 N4 ? ? ? 1_555 F DG 6 O6 ? ? E DC 3 F DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? E DC 3 O2 ? ? ? 1_555 F DG 6 N2 ? ? E DC 3 F DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? E DA 4 N1 ? ? ? 1_555 F DT 5 N3 ? ? E DA 4 F DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? E DA 4 N6 ? ? ? 1_555 F DT 5 O4 ? ? E DA 4 F DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? E DG 5 N1 ? ? ? 1_555 F DC 4 N3 ? ? E DG 5 F DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? E DG 5 N2 ? ? ? 1_555 F DC 4 O2 ? ? E DG 5 F DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? E DG 5 O6 ? ? ? 1_555 F DC 4 N4 ? ? E DG 5 F DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? E DA 6 N1 ? ? ? 1_555 F DT 3 N3 ? ? E DA 6 F DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? E DA 6 N6 ? ? ? 1_555 F DT 3 O4 ? ? E DA 6 F DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? E DC 7 N3 ? ? ? 1_555 F DG 2 N1 ? ? E DC 7 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? E DC 7 N4 ? ? ? 1_555 F DG 2 O6 ? ? E DC 7 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? E DC 7 O2 ? ? ? 1_555 F DG 2 N2 ? ? E DC 7 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? E DG 8 N1 ? ? ? 1_555 F DC 1 N3 ? ? E DG 8 F DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? E DG 8 N2 ? ? ? 1_555 F DC 1 O2 ? ? E DG 8 F DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? E DG 8 O6 ? ? ? 1_555 F DC 1 N4 ? ? E DG 8 F DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 22 ? A CYS 125 ? 1_555 ZN ? G ZN . ? A ZN 701 ? 1_555 SG ? A CYS 25 ? A CYS 128 ? 1_555 111.5 ? 2 SG ? A CYS 22 ? A CYS 125 ? 1_555 ZN ? G ZN . ? A ZN 701 ? 1_555 ND1 ? A HIS 56 ? A HIS 159 ? 1_555 103.6 ? 3 SG ? A CYS 25 ? A CYS 128 ? 1_555 ZN ? G ZN . ? A ZN 701 ? 1_555 ND1 ? A HIS 56 ? A HIS 159 ? 1_555 96.4 ? 4 SG ? A CYS 22 ? A CYS 125 ? 1_555 ZN ? G ZN . ? A ZN 701 ? 1_555 SG ? A CYS 59 ? A CYS 162 ? 1_555 109.6 ? 5 SG ? A CYS 25 ? A CYS 128 ? 1_555 ZN ? G ZN . ? A ZN 701 ? 1_555 SG ? A CYS 59 ? A CYS 162 ? 1_555 122.2 ? 6 ND1 ? A HIS 56 ? A HIS 159 ? 1_555 ZN ? G ZN . ? A ZN 701 ? 1_555 SG ? A CYS 59 ? A CYS 162 ? 1_555 111.3 ? 7 SG ? B CYS 22 ? B CYS 125 ? 1_555 ZN ? H ZN . ? B ZN 701 ? 1_555 SG ? B CYS 25 ? B CYS 128 ? 1_555 110.9 ? 8 SG ? B CYS 22 ? B CYS 125 ? 1_555 ZN ? H ZN . ? B ZN 701 ? 1_555 ND1 ? B HIS 56 ? B HIS 159 ? 1_555 95.3 ? 9 SG ? B CYS 25 ? B CYS 128 ? 1_555 ZN ? H ZN . ? B ZN 701 ? 1_555 ND1 ? B HIS 56 ? B HIS 159 ? 1_555 103.3 ? 10 SG ? B CYS 22 ? B CYS 125 ? 1_555 ZN ? H ZN . ? B ZN 701 ? 1_555 SG ? B CYS 59 ? B CYS 162 ? 1_555 106.0 ? 11 SG ? B CYS 25 ? B CYS 128 ? 1_555 ZN ? H ZN . ? B ZN 701 ? 1_555 SG ? B CYS 59 ? B CYS 162 ? 1_555 117.2 ? 12 ND1 ? B HIS 56 ? B HIS 159 ? 1_555 ZN ? H ZN . ? B ZN 701 ? 1_555 SG ? B CYS 59 ? B CYS 162 ? 1_555 121.9 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 45 ? TYR A 55 ? LYS A 148 TYR A 158 A 2 VAL A 34 ? ASP A 42 ? VAL A 137 ASP A 145 A 3 PHE A 10 ? TYR A 14 ? PHE A 113 TYR A 117 A 4 LEU A 78 ? LYS A 79 ? LEU A 181 LYS A 182 B 1 PHE B 10 ? TYR B 14 ? PHE B 113 TYR B 117 B 2 VAL B 34 ? MET B 40 ? VAL B 137 MET B 143 B 3 ILE B 51 ? TYR B 55 ? ILE B 154 TYR B 158 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 51 ? O ILE A 154 N MET A 40 ? N MET A 143 A 2 3 O SER A 37 ? O SER A 140 N ALA A 11 ? N ALA A 114 A 3 4 N ALA A 12 ? N ALA A 115 O LYS A 79 ? O LYS A 182 B 1 2 N GLU B 13 ? N GLU B 116 O ARG B 35 ? O ARG B 138 B 2 3 N LEU B 36 ? N LEU B 139 O TYR B 55 ? O TYR B 158 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 701 ? 4 'BINDING SITE FOR RESIDUE ZN A 701' AC2 Software B ZN 701 ? 4 'BINDING SITE FOR RESIDUE ZN B 701' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 22 ? CYS A 125 . ? 1_555 ? 2 AC1 4 CYS A 25 ? CYS A 128 . ? 1_555 ? 3 AC1 4 HIS A 56 ? HIS A 159 . ? 1_555 ? 4 AC1 4 CYS A 59 ? CYS A 162 . ? 1_555 ? 5 AC2 4 CYS B 22 ? CYS B 125 . ? 1_555 ? 6 AC2 4 CYS B 25 ? CYS B 128 . ? 1_555 ? 7 AC2 4 HIS B 56 ? HIS B 159 . ? 1_555 ? 8 AC2 4 CYS B 59 ? CYS B 162 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 D _pdbx_validate_rmsd_bond.auth_comp_id_1 DT _pdbx_validate_rmsd_bond.auth_seq_id_1 5 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 D _pdbx_validate_rmsd_bond.auth_comp_id_2 DT _pdbx_validate_rmsd_bond.auth_seq_id_2 5 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.376 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.043 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A LEU 199 ? ? N A PRO 200 ? ? CA A PRO 200 ? ? 128.99 119.30 9.69 1.50 Y 2 1 "C3'" C DG 5 ? ? "C2'" C DG 5 ? ? "C1'" C DG 5 ? ? 96.75 102.40 -5.65 0.80 N 3 1 "O4'" C DG 5 ? ? "C1'" C DG 5 ? ? N9 C DG 5 ? ? 111.48 108.30 3.18 0.30 N 4 1 "O4'" C DG 8 ? ? "C1'" C DG 8 ? ? N9 C DG 8 ? ? 111.99 108.30 3.69 0.30 N 5 1 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 110.21 108.30 1.91 0.30 N 6 1 "C3'" E DC 3 ? ? "C2'" E DC 3 ? ? "C1'" E DC 3 ? ? 96.31 102.40 -6.09 0.80 N 7 1 "C4'" E DG 5 ? ? "C3'" E DG 5 ? ? "C2'" E DG 5 ? ? 97.31 102.20 -4.89 0.70 N 8 1 "C3'" E DG 5 ? ? "C2'" E DG 5 ? ? "C1'" E DG 5 ? ? 95.27 102.40 -7.13 0.80 N 9 1 "O4'" E DG 5 ? ? "C1'" E DG 5 ? ? N9 E DG 5 ? ? 114.57 108.30 6.27 0.30 N 10 1 "O4'" E DA 6 ? ? "C1'" E DA 6 ? ? N9 E DA 6 ? ? 102.93 108.00 -5.07 0.70 N 11 1 "O4'" F DG 6 ? ? "C4'" F DG 6 ? ? "C3'" F DG 6 ? ? 100.41 104.50 -4.09 0.40 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 148 ? ? -153.17 62.98 2 1 SER A 177 ? ? 56.30 -128.93 3 1 LYS B 105 ? ? -69.08 61.62 4 1 GLU B 107 ? ? -119.47 -149.69 5 1 LYS B 108 ? ? 85.51 -109.84 6 1 ARG B 167 ? ? -24.82 -63.61 7 1 ARG B 173 ? ? -49.51 158.01 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 104 ? A MET 1 2 1 Y 1 A LYS 105 ? A LYS 2 3 1 Y 1 A ALA 106 ? A ALA 3 4 1 Y 1 A GLU 107 ? A GLU 4 5 1 Y 1 A LYS 108 ? A LYS 5 6 1 Y 1 A VAL 202 ? A VAL 99 7 1 Y 1 A LYS 203 ? A LYS 100 8 1 Y 1 A SER 204 ? A SER 101 9 1 Y 1 A GLU 205 ? A GLU 102 10 1 Y 1 A GLY 206 ? A GLY 103 11 1 Y 1 A LEU 207 ? A LEU 104 12 1 Y 1 A GLU 208 ? A GLU 105 13 1 Y 1 A HIS 209 ? A HIS 106 14 1 Y 1 A HIS 210 ? A HIS 107 15 1 Y 1 A HIS 211 ? A HIS 108 16 1 Y 1 A HIS 212 ? A HIS 109 17 1 Y 1 A HIS 213 ? A HIS 110 18 1 Y 1 A HIS 214 ? A HIS 111 19 1 Y 1 B SER 204 ? B SER 101 20 1 Y 1 B GLU 205 ? B GLU 102 21 1 Y 1 B GLY 206 ? B GLY 103 22 1 Y 1 B LEU 207 ? B LEU 104 23 1 Y 1 B GLU 208 ? B GLU 105 24 1 Y 1 B HIS 209 ? B HIS 106 25 1 Y 1 B HIS 210 ? B HIS 107 26 1 Y 1 B HIS 211 ? B HIS 108 27 1 Y 1 B HIS 212 ? B HIS 109 28 1 Y 1 B HIS 213 ? B HIS 110 29 1 Y 1 B HIS 214 ? B HIS 111 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SER N N N N 433 SER CA C N S 434 SER C C N N 435 SER O O N N 436 SER CB C N N 437 SER OG O N N 438 SER OXT O N N 439 SER H H N N 440 SER H2 H N N 441 SER HA H N N 442 SER HB2 H N N 443 SER HB3 H N N 444 SER HG H N N 445 SER HXT H N N 446 THR N N N N 447 THR CA C N S 448 THR C C N N 449 THR O O N N 450 THR CB C N R 451 THR OG1 O N N 452 THR CG2 C N N 453 THR OXT O N N 454 THR H H N N 455 THR H2 H N N 456 THR HA H N N 457 THR HB H N N 458 THR HG1 H N N 459 THR HG21 H N N 460 THR HG22 H N N 461 THR HG23 H N N 462 THR HXT H N N 463 TRP N N N N 464 TRP CA C N S 465 TRP C C N N 466 TRP O O N N 467 TRP CB C N N 468 TRP CG C Y N 469 TRP CD1 C Y N 470 TRP CD2 C Y N 471 TRP NE1 N Y N 472 TRP CE2 C Y N 473 TRP CE3 C Y N 474 TRP CZ2 C Y N 475 TRP CZ3 C Y N 476 TRP CH2 C Y N 477 TRP OXT O N N 478 TRP H H N N 479 TRP H2 H N N 480 TRP HA H N N 481 TRP HB2 H N N 482 TRP HB3 H N N 483 TRP HD1 H N N 484 TRP HE1 H N N 485 TRP HE3 H N N 486 TRP HZ2 H N N 487 TRP HZ3 H N N 488 TRP HH2 H N N 489 TRP HXT H N N 490 TYR N N N N 491 TYR CA C N S 492 TYR C C N N 493 TYR O O N N 494 TYR CB C N N 495 TYR CG C Y N 496 TYR CD1 C Y N 497 TYR CD2 C Y N 498 TYR CE1 C Y N 499 TYR CE2 C Y N 500 TYR CZ C Y N 501 TYR OH O N N 502 TYR OXT O N N 503 TYR H H N N 504 TYR H2 H N N 505 TYR HA H N N 506 TYR HB2 H N N 507 TYR HB3 H N N 508 TYR HD1 H N N 509 TYR HD2 H N N 510 TYR HE1 H N N 511 TYR HE2 H N N 512 TYR HH H N N 513 TYR HXT H N N 514 VAL N N N N 515 VAL CA C N S 516 VAL C C N N 517 VAL O O N N 518 VAL CB C N N 519 VAL CG1 C N N 520 VAL CG2 C N N 521 VAL OXT O N N 522 VAL H H N N 523 VAL H2 H N N 524 VAL HA H N N 525 VAL HB H N N 526 VAL HG11 H N N 527 VAL HG12 H N N 528 VAL HG13 H N N 529 VAL HG21 H N N 530 VAL HG22 H N N 531 VAL HG23 H N N 532 VAL HXT H N N 533 ZN ZN ZN N N 534 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TRP N CA sing N N 455 TRP N H sing N N 456 TRP N H2 sing N N 457 TRP CA C sing N N 458 TRP CA CB sing N N 459 TRP CA HA sing N N 460 TRP C O doub N N 461 TRP C OXT sing N N 462 TRP CB CG sing N N 463 TRP CB HB2 sing N N 464 TRP CB HB3 sing N N 465 TRP CG CD1 doub Y N 466 TRP CG CD2 sing Y N 467 TRP CD1 NE1 sing Y N 468 TRP CD1 HD1 sing N N 469 TRP CD2 CE2 doub Y N 470 TRP CD2 CE3 sing Y N 471 TRP NE1 CE2 sing Y N 472 TRP NE1 HE1 sing N N 473 TRP CE2 CZ2 sing Y N 474 TRP CE3 CZ3 doub Y N 475 TRP CE3 HE3 sing N N 476 TRP CZ2 CH2 doub Y N 477 TRP CZ2 HZ2 sing N N 478 TRP CZ3 CH2 sing Y N 479 TRP CZ3 HZ3 sing N N 480 TRP CH2 HH2 sing N N 481 TRP OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 VAL N CA sing N N 507 VAL N H sing N N 508 VAL N H2 sing N N 509 VAL CA C sing N N 510 VAL CA CB sing N N 511 VAL CA HA sing N N 512 VAL C O doub N N 513 VAL C OXT sing N N 514 VAL CB CG1 sing N N 515 VAL CB CG2 sing N N 516 VAL CB HB sing N N 517 VAL CG1 HG11 sing N N 518 VAL CG1 HG12 sing N N 519 VAL CG1 HG13 sing N N 520 VAL CG2 HG21 sing N N 521 VAL CG2 HG22 sing N N 522 VAL CG2 HG23 sing N N 523 VAL OXT HXT sing N N 524 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3ODC 'double helix' 3ODC 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DC 1 1_555 D DG 8 1_555 0.397 -0.151 0.209 8.792 -23.301 -1.793 1 C_DC1:DG8_D C 1 ? D 8 ? 19 1 1 C DC 2 1_555 D DG 7 1_555 0.175 -0.291 0.028 -1.987 -9.724 0.138 2 C_DC2:DG7_D C 2 ? D 7 ? 19 1 1 C DC 3 1_555 D DG 6 1_555 0.073 -0.076 -0.111 9.814 -8.799 1.175 3 C_DC3:DG6_D C 3 ? D 6 ? 19 1 1 C DA 4 1_555 D DT 5 1_555 -0.026 -0.038 0.311 2.999 -12.508 1.410 4 C_DA4:DT5_D C 4 ? D 5 ? 20 1 1 C DG 5 1_555 D DC 4 1_555 0.091 -0.187 0.225 8.055 -8.597 -3.077 5 C_DG5:DC4_D C 5 ? D 4 ? 19 1 1 C DA 6 1_555 D DT 3 1_555 -0.158 -0.257 0.254 1.174 -13.867 -0.929 6 C_DA6:DT3_D C 6 ? D 3 ? 20 1 1 C DC 7 1_555 D DG 2 1_555 0.292 -0.065 0.228 0.851 -5.059 1.609 7 C_DC7:DG2_D C 7 ? D 2 ? 19 1 1 C DG 8 1_555 D DC 1 1_555 0.296 -0.068 0.936 19.200 -13.602 -1.541 8 C_DG8:DC1_D C 8 ? D 1 ? 19 1 1 E DC 1 1_555 F DG 8 1_555 -0.050 -0.326 -0.004 11.245 -17.815 -4.166 9 E_DC1:DG8_F E 1 ? F 8 ? 19 1 1 E DC 2 1_555 F DG 7 1_555 -0.008 -0.283 0.242 -8.702 -9.492 -0.817 10 E_DC2:DG7_F E 2 ? F 7 ? 19 1 1 E DC 3 1_555 F DG 6 1_555 0.075 -0.158 -0.056 2.631 -3.379 -5.646 11 E_DC3:DG6_F E 3 ? F 6 ? 19 1 1 E DA 4 1_555 F DT 5 1_555 0.083 -0.193 0.133 0.698 -9.705 -2.623 12 E_DA4:DT5_F E 4 ? F 5 ? 20 1 1 E DG 5 1_555 F DC 4 1_555 0.222 -0.450 0.363 10.031 -7.965 -7.193 13 E_DG5:DC4_F E 5 ? F 4 ? 19 1 1 E DA 6 1_555 F DT 3 1_555 0.172 -0.041 0.156 2.462 -7.586 1.165 14 E_DA6:DT3_F E 6 ? F 3 ? 20 1 1 E DC 7 1_555 F DG 2 1_555 -0.667 -0.012 0.126 2.069 -5.883 2.663 15 E_DC7:DG2_F E 7 ? F 2 ? 19 1 1 E DG 8 1_555 F DC 1 1_555 0.636 -0.220 0.377 13.641 -3.239 -4.677 16 E_DG8:DC1_F E 8 ? F 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DC 1 1_555 D DG 8 1_555 C DC 2 1_555 D DG 7 1_555 -0.623 -0.872 3.555 0.569 1.903 29.940 -2.106 1.330 3.482 3.678 -1.100 30.004 1 CC_DC1DC2:DG7DG8_DD C 1 ? D 8 ? C 2 ? D 7 ? 1 C DC 2 1_555 D DG 7 1_555 C DC 3 1_555 D DG 6 1_555 -0.435 0.785 3.132 2.355 7.779 25.484 -0.301 1.546 3.176 17.088 -5.172 26.729 2 CC_DC2DC3:DG6DG7_DD C 2 ? D 7 ? C 3 ? D 6 ? 1 C DC 3 1_555 D DG 6 1_555 C DA 4 1_555 D DT 5 1_555 0.128 2.598 3.352 -0.434 -6.752 51.124 3.436 -0.176 3.008 -7.785 0.500 51.540 3 CC_DC3DA4:DT5DG6_DD C 3 ? D 6 ? C 4 ? D 5 ? 1 C DA 4 1_555 D DT 5 1_555 C DG 5 1_555 D DC 4 1_555 0.208 0.522 3.271 -1.295 6.625 27.277 -0.512 -0.739 3.290 13.783 2.694 28.084 4 CC_DA4DG5:DC4DT5_DD C 4 ? D 5 ? C 5 ? D 4 ? 1 C DG 5 1_555 D DC 4 1_555 C DA 6 1_555 D DT 3 1_555 -0.244 0.087 3.458 -1.983 1.440 37.492 -0.064 0.105 3.466 2.238 3.081 37.569 5 CC_DG5DA6:DT3DC4_DD C 5 ? D 4 ? C 6 ? D 3 ? 1 C DA 6 1_555 D DT 3 1_555 C DC 7 1_555 D DG 2 1_555 0.415 -0.548 3.278 2.449 1.339 33.744 -1.157 -0.316 3.276 2.301 -4.210 33.855 6 CC_DA6DC7:DG2DT3_DD C 6 ? D 3 ? C 7 ? D 2 ? 1 C DC 7 1_555 D DG 2 1_555 C DG 8 1_555 D DC 1 1_555 0.480 0.281 2.928 -2.962 5.439 34.514 -0.265 -1.196 2.887 9.076 4.943 35.049 7 CC_DC7DG8:DC1DG2_DD C 7 ? D 2 ? C 8 ? D 1 ? 1 E DC 1 1_555 F DG 8 1_555 E DC 2 1_555 F DG 7 1_555 -0.641 -0.924 3.712 -1.852 2.327 33.792 -2.006 0.762 3.671 3.993 3.179 33.919 8 EE_DC1DC2:DG7DG8_FF E 1 ? F 8 ? E 2 ? F 7 ? 1 E DC 2 1_555 F DG 7 1_555 E DC 3 1_555 F DG 6 1_555 -0.709 0.568 3.255 3.274 4.232 27.255 0.169 2.263 3.199 8.872 -6.864 27.765 9 EE_DC2DC3:DG6DG7_FF E 2 ? F 7 ? E 3 ? F 6 ? 1 E DC 3 1_555 F DG 6 1_555 E DA 4 1_555 F DT 5 1_555 0.354 2.443 3.291 0.837 -6.419 50.260 3.292 -0.357 2.984 -7.521 -0.981 50.648 10 EE_DC3DA4:DT5DG6_FF E 3 ? F 6 ? E 4 ? F 5 ? 1 E DA 4 1_555 F DT 5 1_555 E DG 5 1_555 F DC 4 1_555 -0.056 0.182 3.135 -4.192 4.952 31.077 -0.544 -0.641 3.107 9.118 7.719 31.731 11 EE_DA4DG5:DC4DT5_FF E 4 ? F 5 ? E 5 ? F 4 ? 1 E DG 5 1_555 F DC 4 1_555 E DA 6 1_555 F DT 3 1_555 -0.001 0.081 3.494 -0.415 0.558 38.338 0.050 -0.054 3.495 0.849 0.632 38.344 12 EE_DG5DA6:DT3DC4_FF E 5 ? F 4 ? E 6 ? F 3 ? 1 E DA 6 1_555 F DT 3 1_555 E DC 7 1_555 F DG 2 1_555 0.178 -0.722 3.313 1.260 4.660 25.018 -2.966 -0.045 3.134 10.630 -2.875 25.472 13 EE_DA6DC7:DG2DT3_FF E 6 ? F 3 ? E 7 ? F 2 ? 1 E DC 7 1_555 F DG 2 1_555 E DG 8 1_555 F DC 1 1_555 0.304 0.498 3.118 0.248 4.991 38.848 0.168 -0.426 3.157 7.465 -0.370 39.155 14 EE_DC7DG8:DC1DG2_FF E 7 ? F 2 ? E 8 ? F 1 ? # _atom_sites.entry_id 3ODC _atom_sites.fract_transf_matrix[1][1] 0.015691 _atom_sites.fract_transf_matrix[1][2] 0.009059 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018118 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005197 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S ZN # loop_