HEADER DNA BINDING PROTEIN/DNA 11-AUG-10 3ODC TITLE HUMAN PARP-1 ZINC FINGER 2 (ZN2) BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY [ADP-RIBOSE] POLYMERASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PARP-1 ZINC FINGER 2, ZN2, UNP RESIDUES 105-206; COMPND 5 SYNONYM: PARP-1, NAD(+) ADP-RIBOSYLTRANSFERASE 1, ADPRT 1, POLY[ADP- COMPND 6 RIBOSE] SYNTHASE 1; COMPND 7 EC: 2.4.2.30; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 5'-D(*CP*CP*CP*AP*GP*AP*CP*G)-3'; COMPND 11 CHAIN: C, E; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: 5'-D(*CP*GP*TP*CP*TP*GP*GP*G)-3'; COMPND 15 CHAIN: D, F; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADPRT, PARP1, PPOL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: CHEMICALLY SYNTHESIZED DNA; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 OTHER_DETAILS: CHEMICALLY SYNTHESIZED DNA KEYWDS PROTEIN-DNA COMPLEX, PARP ZINC FINGER, DNA BINDING PROTEIN-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.M.PASCAL,M.-F.LANGELIER REVDAT 4 21-FEB-24 3ODC 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3ODC 1 REMARK REVDAT 2 13-APR-11 3ODC 1 JRNL REVDAT 1 12-JAN-11 3ODC 0 JRNL AUTH M.F.LANGELIER,J.L.PLANCK,S.ROY,J.M.PASCAL JRNL TITL CRYSTAL STRUCTURES OF POLY(ADP-RIBOSE) POLYMERASE-1 (PARP-1) JRNL TITL 2 ZINC FINGERS BOUND TO DNA: STRUCTURAL AND FUNCTIONAL JRNL TITL 3 INSIGHTS INTO DNA-DEPENDENT PARP-1 ACTIVITY. JRNL REF J.BIOL.CHEM. V. 286 10690 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21233213 JRNL DOI 10.1074/JBC.M110.202507 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.2_432 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.710 REMARK 3 FREE R VALUE TEST SET COUNT : 556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.2655 - 4.4429 1.00 2952 142 0.1765 0.2122 REMARK 3 2 4.4429 - 3.5274 1.00 2784 141 0.1709 0.2238 REMARK 3 3 3.5274 - 3.0818 1.00 2746 145 0.2100 0.2636 REMARK 3 4 3.0818 - 2.8001 1.00 2760 128 0.2864 0.3468 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 34.70 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50710 REMARK 3 B22 (A**2) : -0.50710 REMARK 3 B33 (A**2) : 1.01420 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2277 REMARK 3 ANGLE : 1.305 3173 REMARK 3 CHIRALITY : 0.071 337 REMARK 3 PLANARITY : 0.005 300 REMARK 3 DIHEDRAL : 24.867 917 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ODC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060972. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : SILICON(111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11845 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.71700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.36-1.42 M SODIUM CITRATE PH 6.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.13500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 128.27000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 128.27000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.13500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 104 REMARK 465 LYS A 105 REMARK 465 ALA A 106 REMARK 465 GLU A 107 REMARK 465 LYS A 108 REMARK 465 VAL A 202 REMARK 465 LYS A 203 REMARK 465 SER A 204 REMARK 465 GLU A 205 REMARK 465 GLY A 206 REMARK 465 LEU A 207 REMARK 465 GLU A 208 REMARK 465 HIS A 209 REMARK 465 HIS A 210 REMARK 465 HIS A 211 REMARK 465 HIS A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 SER B 204 REMARK 465 GLU B 205 REMARK 465 GLY B 206 REMARK 465 LEU B 207 REMARK 465 GLU B 208 REMARK 465 HIS B 209 REMARK 465 HIS B 210 REMARK 465 HIS B 211 REMARK 465 HIS B 212 REMARK 465 HIS B 213 REMARK 465 HIS B 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 105 CG CD CE NZ REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 LYS B 203 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT D 5 O3' DT D 5 C3' -0.043 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 200 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 DG C 5 C3' - C2' - C1' ANGL. DEV. = -5.7 DEGREES REMARK 500 DG C 5 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG C 8 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DG D 7 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC E 3 C3' - C2' - C1' ANGL. DEV. = -6.1 DEGREES REMARK 500 DG E 5 C4' - C3' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DG E 5 C3' - C2' - C1' ANGL. DEV. = -7.1 DEGREES REMARK 500 DG E 5 O4' - C1' - N9 ANGL. DEV. = 6.3 DEGREES REMARK 500 DA E 6 O4' - C1' - N9 ANGL. DEV. = -5.1 DEGREES REMARK 500 DG F 6 O4' - C4' - C3' ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 148 62.98 -153.17 REMARK 500 SER A 177 -128.93 56.30 REMARK 500 LYS B 105 61.62 -69.08 REMARK 500 GLU B 107 -149.69 -119.47 REMARK 500 LYS B 108 -109.84 85.51 REMARK 500 ARG B 167 -63.61 -24.82 REMARK 500 ARG B 173 158.01 -49.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 125 SG REMARK 620 2 CYS A 128 SG 111.5 REMARK 620 3 HIS A 159 ND1 103.6 96.4 REMARK 620 4 CYS A 162 SG 109.6 122.2 111.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 125 SG REMARK 620 2 CYS B 128 SG 110.9 REMARK 620 3 HIS B 159 ND1 95.3 103.3 REMARK 620 4 CYS B 162 SG 106.0 117.2 121.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OD8 RELATED DB: PDB REMARK 900 HUMAN PARP-1 ZINC FINGER 1 (ZN1) BOUND TO DNA REMARK 900 RELATED ID: 3ODA RELATED DB: PDB REMARK 900 HUMAN PARP-1 ZINC FINGER 2 (ZN2) BOUND TO DNA REMARK 900 RELATED ID: 3ODE RELATED DB: PDB REMARK 900 HUMAN PARP-1 ZINC FINGER 2 (ZN2) BOUND TO DNA DBREF 3ODC A 105 206 UNP P09874 PARP1_HUMAN 105 206 DBREF 3ODC B 105 206 UNP P09874 PARP1_HUMAN 105 206 DBREF 3ODC C 1 8 PDB 3ODC 3ODC 1 8 DBREF 3ODC E 1 8 PDB 3ODC 3ODC 1 8 DBREF 3ODC D 1 8 PDB 3ODC 3ODC 1 8 DBREF 3ODC F 1 8 PDB 3ODC 3ODC 1 8 SEQADV 3ODC MET A 104 UNP P09874 EXPRESSION TAG SEQADV 3ODC LEU A 207 UNP P09874 EXPRESSION TAG SEQADV 3ODC GLU A 208 UNP P09874 EXPRESSION TAG SEQADV 3ODC HIS A 209 UNP P09874 EXPRESSION TAG SEQADV 3ODC HIS A 210 UNP P09874 EXPRESSION TAG SEQADV 3ODC HIS A 211 UNP P09874 EXPRESSION TAG SEQADV 3ODC HIS A 212 UNP P09874 EXPRESSION TAG SEQADV 3ODC HIS A 213 UNP P09874 EXPRESSION TAG SEQADV 3ODC HIS A 214 UNP P09874 EXPRESSION TAG SEQADV 3ODC MET B 104 UNP P09874 EXPRESSION TAG SEQADV 3ODC LEU B 207 UNP P09874 EXPRESSION TAG SEQADV 3ODC GLU B 208 UNP P09874 EXPRESSION TAG SEQADV 3ODC HIS B 209 UNP P09874 EXPRESSION TAG SEQADV 3ODC HIS B 210 UNP P09874 EXPRESSION TAG SEQADV 3ODC HIS B 211 UNP P09874 EXPRESSION TAG SEQADV 3ODC HIS B 212 UNP P09874 EXPRESSION TAG SEQADV 3ODC HIS B 213 UNP P09874 EXPRESSION TAG SEQADV 3ODC HIS B 214 UNP P09874 EXPRESSION TAG SEQRES 1 A 111 MET LYS ALA GLU LYS THR LEU GLY ASP PHE ALA ALA GLU SEQRES 2 A 111 TYR ALA LYS SER ASN ARG SER THR CYS LYS GLY CYS MET SEQRES 3 A 111 GLU LYS ILE GLU LYS GLY GLN VAL ARG LEU SER LYS LYS SEQRES 4 A 111 MET VAL ASP PRO GLU LYS PRO GLN LEU GLY MET ILE ASP SEQRES 5 A 111 ARG TRP TYR HIS PRO GLY CYS PHE VAL LYS ASN ARG GLU SEQRES 6 A 111 GLU LEU GLY PHE ARG PRO GLU TYR SER ALA SER GLN LEU SEQRES 7 A 111 LYS GLY PHE SER LEU LEU ALA THR GLU ASP LYS GLU ALA SEQRES 8 A 111 LEU LYS LYS GLN LEU PRO GLY VAL LYS SER GLU GLY LEU SEQRES 9 A 111 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 111 MET LYS ALA GLU LYS THR LEU GLY ASP PHE ALA ALA GLU SEQRES 2 B 111 TYR ALA LYS SER ASN ARG SER THR CYS LYS GLY CYS MET SEQRES 3 B 111 GLU LYS ILE GLU LYS GLY GLN VAL ARG LEU SER LYS LYS SEQRES 4 B 111 MET VAL ASP PRO GLU LYS PRO GLN LEU GLY MET ILE ASP SEQRES 5 B 111 ARG TRP TYR HIS PRO GLY CYS PHE VAL LYS ASN ARG GLU SEQRES 6 B 111 GLU LEU GLY PHE ARG PRO GLU TYR SER ALA SER GLN LEU SEQRES 7 B 111 LYS GLY PHE SER LEU LEU ALA THR GLU ASP LYS GLU ALA SEQRES 8 B 111 LEU LYS LYS GLN LEU PRO GLY VAL LYS SER GLU GLY LEU SEQRES 9 B 111 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 8 DC DC DC DA DG DA DC DG SEQRES 1 D 8 DC DG DT DC DT DG DG DG SEQRES 1 E 8 DC DC DC DA DG DA DC DG SEQRES 1 F 8 DC DG DT DC DT DG DG DG HET ZN A 701 1 HET ZN B 701 1 HETNAM ZN ZINC ION FORMUL 7 ZN 2(ZN 2+) FORMUL 9 HOH *39(H2 O) HELIX 1 1 HIS A 159 ASN A 166 1 8 HELIX 2 2 ASN A 166 GLY A 171 1 6 HELIX 3 3 TYR A 176 SER A 179 5 4 HELIX 4 4 GLY A 183 LEU A 187 5 5 HELIX 5 5 ALA A 188 LEU A 199 1 12 HELIX 6 6 LYS B 148 GLY B 152 5 5 HELIX 7 7 HIS B 159 ASN B 166 1 8 HELIX 8 8 SER B 177 LEU B 181 5 5 HELIX 9 9 GLY B 183 LEU B 187 5 5 HELIX 10 10 ALA B 188 LEU B 199 1 12 SHEET 1 A 4 LYS A 148 TYR A 158 0 SHEET 2 A 4 VAL A 137 ASP A 145 -1 N MET A 143 O ILE A 154 SHEET 3 A 4 PHE A 113 TYR A 117 -1 N ALA A 114 O SER A 140 SHEET 4 A 4 LEU A 181 LYS A 182 1 O LYS A 182 N ALA A 115 SHEET 1 B 3 PHE B 113 TYR B 117 0 SHEET 2 B 3 VAL B 137 MET B 143 -1 O ARG B 138 N GLU B 116 SHEET 3 B 3 ILE B 154 TYR B 158 -1 O TYR B 158 N LEU B 139 LINK SG CYS A 125 ZN ZN A 701 1555 1555 2.28 LINK SG CYS A 128 ZN ZN A 701 1555 1555 2.18 LINK ND1 HIS A 159 ZN ZN A 701 1555 1555 2.12 LINK SG CYS A 162 ZN ZN A 701 1555 1555 2.21 LINK SG CYS B 125 ZN ZN B 701 1555 1555 2.30 LINK SG CYS B 128 ZN ZN B 701 1555 1555 2.21 LINK ND1 HIS B 159 ZN ZN B 701 1555 1555 2.11 LINK SG CYS B 162 ZN ZN B 701 1555 1555 2.22 SITE 1 AC1 4 CYS A 125 CYS A 128 HIS A 159 CYS A 162 SITE 1 AC2 4 CYS B 125 CYS B 128 HIS B 159 CYS B 162 CRYST1 63.731 63.731 192.405 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015691 0.009059 0.000000 0.00000 SCALE2 0.000000 0.018118 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005197 0.00000