HEADER HYDROLASE/DNA 11-AUG-10 3ODH TITLE STRUCTURE OF OKRAI/DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: OKRAI ENDONUCLEASE; COMPND 3 CHAIN: A, B, E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*AP*TP*GP*GP*AP*TP*CP*CP*AP*TP*A)-3'); COMPND 7 CHAIN: C, D, G, H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OCEANOBACTER KRIEGII; SOURCE 3 ORGANISM_TAXID: 64972; SOURCE 4 STRAIN: NEB STRAIN COLLECTION; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES KEYWDS ALPHA AND BETA PROTEINS (A/B), RESTRICTION ENDONUCLEASE-LIKE, KEYWDS 2 PHOSPHODIESTERASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.S.VANAMEE,A.K.AGGARWAL REVDAT 4 21-FEB-24 3ODH 1 REMARK LINK REVDAT 3 17-JUL-19 3ODH 1 REMARK REVDAT 2 09-FEB-11 3ODH 1 JRNL REVDAT 1 06-OCT-10 3ODH 0 JRNL AUTH E.S.VANAMEE,H.VIADIU,S.H.CHAN,A.UMMAT,A.M.HARTLINE,S.Y.XU, JRNL AUTH 2 A.K.AGGARWAL JRNL TITL ASYMMETRIC DNA RECOGNITION BY THE OKRAI ENDONUCLEASE, AN JRNL TITL 2 ISOSCHIZOMER OF BAMHI. JRNL REF NUCLEIC ACIDS RES. V. 39 712 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 20833632 JRNL DOI 10.1093/NAR/GKQ779 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 3 NUMBER OF REFLECTIONS : 30786 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1624 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2069 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6007 REMARK 3 NUCLEIC ACID ATOMS : 972 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : 0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.284 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.766 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7221 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9974 ; 1.871 ; 2.133 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 770 ; 7.295 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 261 ;37.954 ;23.870 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1079 ;16.808 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;22.159 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1107 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5112 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3845 ; 0.835 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6200 ; 1.502 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3376 ; 2.259 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3774 ; 3.297 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 194 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7440 -11.2404 7.3144 REMARK 3 T TENSOR REMARK 3 T11: 0.0199 T22: 0.0278 REMARK 3 T33: 0.0037 T12: -0.0003 REMARK 3 T13: -0.0046 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.3627 L22: 0.3547 REMARK 3 L33: 0.4372 L12: 0.0932 REMARK 3 L13: 0.0723 L23: -0.0256 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: 0.0428 S13: -0.0017 REMARK 3 S21: -0.0253 S22: 0.0112 S23: 0.0129 REMARK 3 S31: 0.0562 S32: 0.0099 S33: -0.0044 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 194 REMARK 3 ORIGIN FOR THE GROUP (A): 8.8649 14.0375 19.4531 REMARK 3 T TENSOR REMARK 3 T11: 0.0128 T22: 0.0087 REMARK 3 T33: 0.0513 T12: -0.0046 REMARK 3 T13: 0.0077 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.5597 L22: 0.4159 REMARK 3 L33: 0.1759 L12: 0.1759 REMARK 3 L13: -0.0298 L23: 0.1129 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: 0.0286 S13: 0.1430 REMARK 3 S21: 0.0415 S22: -0.0102 S23: 0.0479 REMARK 3 S31: 0.0215 S32: 0.0100 S33: -0.0114 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 194 REMARK 3 ORIGIN FOR THE GROUP (A): 32.3817 46.5207 20.1438 REMARK 3 T TENSOR REMARK 3 T11: 0.0320 T22: 0.0288 REMARK 3 T33: 0.0056 T12: -0.0016 REMARK 3 T13: -0.0103 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.2023 L22: 0.3770 REMARK 3 L33: 0.2083 L12: 0.0621 REMARK 3 L13: -0.0272 L23: 0.0065 REMARK 3 S TENSOR REMARK 3 S11: -0.0058 S12: 0.0150 S13: 0.0098 REMARK 3 S21: -0.0601 S22: 0.0083 S23: 0.0183 REMARK 3 S31: -0.0149 S32: 0.0035 S33: -0.0025 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 194 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5164 49.6645 48.1423 REMARK 3 T TENSOR REMARK 3 T11: 0.0176 T22: 0.0351 REMARK 3 T33: 0.0152 T12: -0.0038 REMARK 3 T13: 0.0032 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.2256 L22: 0.3508 REMARK 3 L33: 0.1519 L12: -0.0573 REMARK 3 L13: -0.0419 L23: 0.0231 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: -0.0259 S13: 0.0325 REMARK 3 S21: 0.0144 S22: 0.0000 S23: 0.0184 REMARK 3 S31: 0.0021 S32: 0.0054 S33: -0.0089 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 12 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8768 -4.1381 23.2535 REMARK 3 T TENSOR REMARK 3 T11: 0.0303 T22: 0.0481 REMARK 3 T33: 0.0204 T12: -0.0133 REMARK 3 T13: 0.0099 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.7936 L22: 0.2984 REMARK 3 L33: 0.0526 L12: 0.1449 REMARK 3 L13: 0.2006 L23: 0.0237 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: 0.0550 S13: -0.0565 REMARK 3 S21: 0.0831 S22: 0.0146 S23: 0.0263 REMARK 3 S31: -0.0065 S32: 0.0112 S33: -0.0079 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 12 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7913 -3.1823 23.3393 REMARK 3 T TENSOR REMARK 3 T11: 0.0675 T22: 0.0296 REMARK 3 T33: 0.0375 T12: -0.0026 REMARK 3 T13: -0.0073 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.8019 L22: 0.1506 REMARK 3 L33: 0.5551 L12: 0.2985 REMARK 3 L13: 0.6433 L23: 0.2363 REMARK 3 S TENSOR REMARK 3 S11: -0.0358 S12: -0.0142 S13: 0.0326 REMARK 3 S21: 0.0298 S22: -0.0106 S23: -0.0145 REMARK 3 S31: 0.0053 S32: -0.0205 S33: 0.0464 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 1 G 12 REMARK 3 ORIGIN FOR THE GROUP (A): 31.0621 37.4603 35.1391 REMARK 3 T TENSOR REMARK 3 T11: 0.0234 T22: 0.0522 REMARK 3 T33: 0.0201 T12: 0.0088 REMARK 3 T13: 0.0046 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.1322 L22: 0.3172 REMARK 3 L33: 0.0167 L12: -0.0459 REMARK 3 L13: -0.1298 L23: -0.0147 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: 0.1027 S13: 0.0089 REMARK 3 S21: -0.0030 S22: 0.0115 S23: 0.0100 REMARK 3 S31: 0.0026 S32: -0.0086 S33: -0.0051 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 12 REMARK 3 ORIGIN FOR THE GROUP (A): 31.0131 37.8109 35.9679 REMARK 3 T TENSOR REMARK 3 T11: 0.0387 T22: 0.0542 REMARK 3 T33: 0.0117 T12: -0.0103 REMARK 3 T13: -0.0019 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.5153 L22: 0.3895 REMARK 3 L33: 0.3291 L12: -0.4231 REMARK 3 L13: 0.2289 L23: -0.1087 REMARK 3 S TENSOR REMARK 3 S11: -0.0633 S12: -0.0174 S13: -0.0079 REMARK 3 S21: 0.0269 S22: 0.0228 S23: 0.0238 REMARK 3 S31: -0.0285 S32: -0.0185 S33: 0.0405 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ODH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060977. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30786 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-17% PEG 8000, 0.2 M CALCIUM REMARK 280 ACETATE, 0.1 M SODIUM CACODYLATE, PH 6.7, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.49100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.83500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.53750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.83500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.49100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.53750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE B 193 REMARK 465 ARG B 194 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 16 CG CD REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 ARG A 194 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 15 CG1 CG2 REMARK 470 ILE B 18 CG1 CG2 CD1 REMARK 470 MET B 20 CG SD CE REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 ARG B 47 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 65 CG CD OE1 NE2 REMARK 470 ARG B 122 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS B 163 CG CD CE NZ REMARK 470 GLN B 180 CG CD OE1 NE2 REMARK 470 ARG B 191 CG CD NE CZ NH1 NH2 REMARK 470 VAL E 15 CG1 CG2 REMARK 470 ARG E 47 CG CD NE CZ NH1 NH2 REMARK 470 ARG E 75 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 163 CG CD CE NZ REMARK 470 SER F 14 OG REMARK 470 VAL F 15 CG1 CG2 REMARK 470 PRO F 16 CG CD REMARK 470 GLU F 36 CG CD OE1 OE2 REMARK 470 ARG F 122 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS F 163 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ALA F 87 O HOH F 614 1.83 REMARK 500 N ALA B 78 O HOH B 615 1.84 REMARK 500 O ASP F 86 O LEU F 98 2.04 REMARK 500 OP1 DA H 12 O HOH F 244 2.12 REMARK 500 O HOH C 13 O HOH C 282 2.17 REMARK 500 O HOH A 317 O HOH A 582 2.17 REMARK 500 O VAL F 15 N GLY F 17 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH E 221 O HOH C 13 1565 1.95 REMARK 500 ND2 ASN A 11 O HOH E 263 4455 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA D 2 O3' DA D 2 C3' -0.078 REMARK 500 DT G 3 O3' DT G 3 C3' -0.044 REMARK 500 DA G 12 N9 DA G 12 C4 -0.039 REMARK 500 DT H 11 O3' DT H 11 C3' -0.041 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 16 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG B 75 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG E 122 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG E 122 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT C 1 O4' - C1' - N1 ANGL. DEV. = 6.3 DEGREES REMARK 500 DT C 3 N3 - C2 - O2 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG C 4 C3' - C2' - C1' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG C 4 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT C 7 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DT C 7 C2 - N3 - C4 ANGL. DEV. = -4.1 DEGREES REMARK 500 DT C 11 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 DA C 12 N9 - C1' - C2' ANGL. DEV. = 10.7 DEGREES REMARK 500 DA C 12 C2 - N3 - C4 ANGL. DEV. = -4.5 DEGREES REMARK 500 DA C 12 C4 - C5 - N7 ANGL. DEV. = 5.3 DEGREES REMARK 500 DA C 12 C5 - N7 - C8 ANGL. DEV. = -6.3 DEGREES REMARK 500 DA C 12 N7 - C8 - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 DA C 12 C8 - N9 - C4 ANGL. DEV. = -2.4 DEGREES REMARK 500 DA C 12 C6 - C5 - N7 ANGL. DEV. = -5.2 DEGREES REMARK 500 DA C 12 N1 - C6 - N6 ANGL. DEV. = 4.8 DEGREES REMARK 500 DT D 1 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT D 1 N3 - C4 - O4 ANGL. DEV. = 4.7 DEGREES REMARK 500 DT D 1 C5 - C4 - O4 ANGL. DEV. = -5.5 DEGREES REMARK 500 DT D 1 C4 - C5 - C7 ANGL. DEV. = -5.0 DEGREES REMARK 500 DT D 1 C6 - C5 - C7 ANGL. DEV. = 3.7 DEGREES REMARK 500 DA D 2 O5' - P - OP2 ANGL. DEV. = -6.9 DEGREES REMARK 500 DA D 2 P - O5' - C5' ANGL. DEV. = 10.3 DEGREES REMARK 500 DT D 3 C5 - C4 - O4 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG D 4 C5 - N7 - C8 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG D 4 N7 - C8 - N9 ANGL. DEV. = -3.2 DEGREES REMARK 500 DG D 5 C2 - N3 - C4 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG D 5 C5 - C6 - O6 ANGL. DEV. = -4.1 DEGREES REMARK 500 DA D 6 O4' - C1' - N9 ANGL. DEV. = -6.0 DEGREES REMARK 500 DC D 8 O5' - C5' - C4' ANGL. DEV. = -7.6 DEGREES REMARK 500 DC D 8 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC D 9 O4' - C1' - N1 ANGL. DEV. = -4.7 DEGREES REMARK 500 DA D 10 O4' - C1' - N9 ANGL. DEV. = -6.1 DEGREES REMARK 500 DT G 1 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DA G 2 O5' - C5' - C4' ANGL. DEV. = -5.2 DEGREES REMARK 500 DT G 3 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT G 3 C4 - C5 - C7 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT G 3 C6 - C5 - C7 ANGL. DEV. = -4.0 DEGREES REMARK 500 DT G 3 C3' - O3' - P ANGL. DEV. = 7.7 DEGREES REMARK 500 DG G 4 O4' - C1' - C2' ANGL. DEV. = -5.3 DEGREES REMARK 500 DC G 9 C4 - C5 - C6 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC G 9 C5 - C6 - N1 ANGL. DEV. = -3.1 DEGREES REMARK 500 DT G 11 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA G 12 O4' - C1' - N9 ANGL. DEV. = -4.5 DEGREES REMARK 500 DA G 12 C2 - N3 - C4 ANGL. DEV. = -3.7 DEGREES REMARK 500 DA G 12 N3 - C4 - C5 ANGL. DEV. = 5.3 DEGREES REMARK 500 DA G 12 C4 - C5 - N7 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 61 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 11 87.30 -150.46 REMARK 500 PRO A 45 46.57 -77.67 REMARK 500 ALA A 78 156.46 -48.55 REMARK 500 ASP A 164 76.23 47.61 REMARK 500 ASN B 11 77.21 -158.18 REMARK 500 PRO B 16 122.26 20.23 REMARK 500 ILE B 18 -63.14 -105.05 REMARK 500 ALA B 78 -47.60 128.73 REMARK 500 ILE B 91 58.83 -104.33 REMARK 500 ASP B 164 72.34 55.03 REMARK 500 ASP B 178 111.55 -161.18 REMARK 500 ARG B 191 -93.31 81.76 REMARK 500 ARG E 5 134.74 -175.89 REMARK 500 ASN E 11 81.05 -156.48 REMARK 500 SER E 14 73.80 3.21 REMARK 500 PRO E 45 46.60 -73.90 REMARK 500 ILE E 91 -103.35 -88.20 REMARK 500 THR E 141 133.07 -39.12 REMARK 500 PRO F 16 75.63 -52.35 REMARK 500 ALA F 78 -36.28 100.54 REMARK 500 ALA F 87 116.08 52.44 REMARK 500 THR F 141 128.48 -38.73 REMARK 500 ARG F 143 16.59 80.55 REMARK 500 ASP F 164 83.98 57.47 REMARK 500 ASP F 178 113.62 -160.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL E 15 PRO E 16 -126.39 REMARK 500 ASN F 12 GLY F 13 -136.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 196 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 71 OE2 REMARK 620 2 ASP A 86 OD1 84.8 REMARK 620 3 HOH A 200 O 78.0 127.1 REMARK 620 4 HOH A 228 O 129.5 74.5 79.1 REMARK 620 5 HOH A 343 O 66.6 127.5 90.1 156.8 REMARK 620 6 DG D 4 O3' 139.4 134.8 81.6 79.2 78.9 REMARK 620 7 DG D 5 OP1 150.4 84.0 129.9 73.0 99.6 53.2 REMARK 620 8 HOH D 258 O 81.2 76.6 146.1 134.4 56.9 97.8 69.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 195 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 86 OD2 REMARK 620 2 ASP A 86 OD1 46.4 REMARK 620 3 TRP A 100 O 80.5 118.7 REMARK 620 4 HOH A 262 O 92.4 73.1 83.1 REMARK 620 5 HOH A 640 O 93.2 117.1 88.9 169.4 REMARK 620 6 DG D 5 OP1 119.2 73.6 151.1 75.6 109.2 REMARK 620 7 HOH D 254 O 159.2 151.3 78.9 87.9 83.7 81.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 195 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 86 OD1 REMARK 620 2 GLU B 99 OE2 86.5 REMARK 620 3 GLU B 99 OE1 73.5 48.2 REMARK 620 4 HOH B 196 O 93.5 84.0 130.2 REMARK 620 5 HOH B 655 O 88.9 127.9 80.8 148.1 REMARK 620 6 DG C 5 OP1 171.9 86.3 104.2 82.1 98.4 REMARK 620 7 HOH C 256 O 96.2 155.9 155.0 71.9 76.2 88.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 195 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 86 OD2 REMARK 620 2 ASP E 86 OD1 46.5 REMARK 620 3 TRP E 100 O 82.1 124.1 REMARK 620 4 HOH E 197 O 161.4 151.9 80.2 REMARK 620 5 HOH E 665 O 89.8 110.4 85.4 83.2 REMARK 620 6 DG H 5 OP1 124.8 78.6 149.2 73.8 107.1 REMARK 620 7 HOH H 35 O 95.9 82.5 82.9 87.5 166.2 79.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA H 13 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 86 OD1 REMARK 620 2 HOH E 220 O 126.3 REMARK 620 3 HOH E 705 O 104.1 96.1 REMARK 620 4 HOH E 706 O 85.3 76.7 170.4 REMARK 620 5 DG H 4 O3' 136.2 92.2 89.7 84.3 REMARK 620 6 DG H 5 OP1 82.6 144.4 95.8 86.8 54.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA F 195 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 86 OD1 REMARK 620 2 GLU F 99 OE2 89.5 REMARK 620 3 GLU F 99 OE1 73.6 49.8 REMARK 620 4 HOH F 612 O 95.6 156.4 153.4 REMARK 620 5 HOH F 613 O 89.6 127.1 79.5 76.1 REMARK 620 6 HOH F 634 O 91.1 88.5 134.5 68.4 144.4 REMARK 620 7 DG G 5 OP1 167.0 79.1 103.0 92.5 102.3 82.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA F 195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA H 13 DBREF 3ODH A 1 194 PDB 3ODH 3ODH 1 194 DBREF 3ODH B 1 194 PDB 3ODH 3ODH 1 194 DBREF 3ODH E 1 194 PDB 3ODH 3ODH 1 194 DBREF 3ODH F 1 194 PDB 3ODH 3ODH 1 194 DBREF 3ODH C 1 12 PDB 3ODH 3ODH 1 12 DBREF 3ODH D 1 12 PDB 3ODH 3ODH 1 12 DBREF 3ODH G 1 12 PDB 3ODH 3ODH 1 12 DBREF 3ODH H 1 12 PDB 3ODH 3ODH 1 12 SEQRES 1 A 194 MET LYS ILE LYS ARG ILE GLU VAL LEU ILE ASN ASN GLY SEQRES 2 A 194 SER VAL PRO GLY ILE PRO MET ILE LEU ASN GLU ILE GLN SEQRES 3 A 194 ASP ALA ILE LYS THR VAL SER TRP PRO GLU GLY ASN ASN SEQRES 4 A 194 SER PHE VAL ILE ASN PRO VAL ARG LYS GLY ASN GLY VAL SEQRES 5 A 194 LYS PRO ILE LYS ASN SER CYS MET ARG HIS LEU HIS GLN SEQRES 6 A 194 LYS GLY TRP ALA LEU GLU HIS PRO VAL ARG ILE LYS ALA SEQRES 7 A 194 GLU MET ARG PRO GLY PRO LEU ASP ALA VAL LYS MET ILE SEQRES 8 A 194 GLY GLY LYS ALA PHE ALA LEU GLU TRP GLU THR GLY ASN SEQRES 9 A 194 ILE SER SER SER HIS ARG ALA ILE ASN LYS MET VAL MET SEQRES 10 A 194 GLY MET LEU GLU ARG VAL ILE ILE GLY GLY VAL LEU ILE SEQRES 11 A 194 LEU PRO SER ARG ASP MET TYR ASN TYR LEU THR ASP ARG SEQRES 12 A 194 VAL GLY ASN PHE ARG GLU LEU GLU PRO TYR PHE SER VAL SEQRES 13 A 194 TRP ARG GLN PHE ASN LEU LYS ASP ALA TYR LEU ALA ILE SEQRES 14 A 194 VAL GLU ILE GLU HIS ASP SER VAL ASP ALA GLN VAL SER SEQRES 15 A 194 LEU ILE PRO LYS GLY THR ASP GLY ARG ALA ILE ARG SEQRES 1 B 194 MET LYS ILE LYS ARG ILE GLU VAL LEU ILE ASN ASN GLY SEQRES 2 B 194 SER VAL PRO GLY ILE PRO MET ILE LEU ASN GLU ILE GLN SEQRES 3 B 194 ASP ALA ILE LYS THR VAL SER TRP PRO GLU GLY ASN ASN SEQRES 4 B 194 SER PHE VAL ILE ASN PRO VAL ARG LYS GLY ASN GLY VAL SEQRES 5 B 194 LYS PRO ILE LYS ASN SER CYS MET ARG HIS LEU HIS GLN SEQRES 6 B 194 LYS GLY TRP ALA LEU GLU HIS PRO VAL ARG ILE LYS ALA SEQRES 7 B 194 GLU MET ARG PRO GLY PRO LEU ASP ALA VAL LYS MET ILE SEQRES 8 B 194 GLY GLY LYS ALA PHE ALA LEU GLU TRP GLU THR GLY ASN SEQRES 9 B 194 ILE SER SER SER HIS ARG ALA ILE ASN LYS MET VAL MET SEQRES 10 B 194 GLY MET LEU GLU ARG VAL ILE ILE GLY GLY VAL LEU ILE SEQRES 11 B 194 LEU PRO SER ARG ASP MET TYR ASN TYR LEU THR ASP ARG SEQRES 12 B 194 VAL GLY ASN PHE ARG GLU LEU GLU PRO TYR PHE SER VAL SEQRES 13 B 194 TRP ARG GLN PHE ASN LEU LYS ASP ALA TYR LEU ALA ILE SEQRES 14 B 194 VAL GLU ILE GLU HIS ASP SER VAL ASP ALA GLN VAL SER SEQRES 15 B 194 LEU ILE PRO LYS GLY THR ASP GLY ARG ALA ILE ARG SEQRES 1 E 194 MET LYS ILE LYS ARG ILE GLU VAL LEU ILE ASN ASN GLY SEQRES 2 E 194 SER VAL PRO GLY ILE PRO MET ILE LEU ASN GLU ILE GLN SEQRES 3 E 194 ASP ALA ILE LYS THR VAL SER TRP PRO GLU GLY ASN ASN SEQRES 4 E 194 SER PHE VAL ILE ASN PRO VAL ARG LYS GLY ASN GLY VAL SEQRES 5 E 194 LYS PRO ILE LYS ASN SER CYS MET ARG HIS LEU HIS GLN SEQRES 6 E 194 LYS GLY TRP ALA LEU GLU HIS PRO VAL ARG ILE LYS ALA SEQRES 7 E 194 GLU MET ARG PRO GLY PRO LEU ASP ALA VAL LYS MET ILE SEQRES 8 E 194 GLY GLY LYS ALA PHE ALA LEU GLU TRP GLU THR GLY ASN SEQRES 9 E 194 ILE SER SER SER HIS ARG ALA ILE ASN LYS MET VAL MET SEQRES 10 E 194 GLY MET LEU GLU ARG VAL ILE ILE GLY GLY VAL LEU ILE SEQRES 11 E 194 LEU PRO SER ARG ASP MET TYR ASN TYR LEU THR ASP ARG SEQRES 12 E 194 VAL GLY ASN PHE ARG GLU LEU GLU PRO TYR PHE SER VAL SEQRES 13 E 194 TRP ARG GLN PHE ASN LEU LYS ASP ALA TYR LEU ALA ILE SEQRES 14 E 194 VAL GLU ILE GLU HIS ASP SER VAL ASP ALA GLN VAL SER SEQRES 15 E 194 LEU ILE PRO LYS GLY THR ASP GLY ARG ALA ILE ARG SEQRES 1 F 194 MET LYS ILE LYS ARG ILE GLU VAL LEU ILE ASN ASN GLY SEQRES 2 F 194 SER VAL PRO GLY ILE PRO MET ILE LEU ASN GLU ILE GLN SEQRES 3 F 194 ASP ALA ILE LYS THR VAL SER TRP PRO GLU GLY ASN ASN SEQRES 4 F 194 SER PHE VAL ILE ASN PRO VAL ARG LYS GLY ASN GLY VAL SEQRES 5 F 194 LYS PRO ILE LYS ASN SER CYS MET ARG HIS LEU HIS GLN SEQRES 6 F 194 LYS GLY TRP ALA LEU GLU HIS PRO VAL ARG ILE LYS ALA SEQRES 7 F 194 GLU MET ARG PRO GLY PRO LEU ASP ALA VAL LYS MET ILE SEQRES 8 F 194 GLY GLY LYS ALA PHE ALA LEU GLU TRP GLU THR GLY ASN SEQRES 9 F 194 ILE SER SER SER HIS ARG ALA ILE ASN LYS MET VAL MET SEQRES 10 F 194 GLY MET LEU GLU ARG VAL ILE ILE GLY GLY VAL LEU ILE SEQRES 11 F 194 LEU PRO SER ARG ASP MET TYR ASN TYR LEU THR ASP ARG SEQRES 12 F 194 VAL GLY ASN PHE ARG GLU LEU GLU PRO TYR PHE SER VAL SEQRES 13 F 194 TRP ARG GLN PHE ASN LEU LYS ASP ALA TYR LEU ALA ILE SEQRES 14 F 194 VAL GLU ILE GLU HIS ASP SER VAL ASP ALA GLN VAL SER SEQRES 15 F 194 LEU ILE PRO LYS GLY THR ASP GLY ARG ALA ILE ARG SEQRES 1 C 12 DT DA DT DG DG DA DT DC DC DA DT DA SEQRES 1 D 12 DT DA DT DG DG DA DT DC DC DA DT DA SEQRES 1 G 12 DT DA DT DG DG DA DT DC DC DA DT DA SEQRES 1 H 12 DT DA DT DG DG DA DT DC DC DA DT DA HET CA A 195 1 HET CA A 196 1 HET CA B 195 1 HET CA E 195 1 HET CA F 195 1 HET CA H 13 1 HETNAM CA CALCIUM ION FORMUL 9 CA 6(CA 2+) FORMUL 15 HOH *710(H2 O) HELIX 1 1 GLY A 17 THR A 31 1 15 HELIX 2 2 VAL A 52 ILE A 55 5 4 HELIX 3 3 LYS A 56 LYS A 66 1 11 HELIX 4 4 ASN A 104 GLU A 121 1 18 HELIX 5 5 SER A 133 ASN A 138 1 6 HELIX 6 6 ASN A 146 GLU A 151 1 6 HELIX 7 7 TYR A 153 ARG A 158 1 6 HELIX 8 8 ILE B 18 VAL B 32 1 15 HELIX 9 9 LYS B 53 ILE B 55 5 3 HELIX 10 10 LYS B 56 LYS B 66 1 11 HELIX 11 11 ASN B 104 GLU B 121 1 18 HELIX 12 12 SER B 133 ASN B 138 1 6 HELIX 13 13 ASN B 146 GLU B 151 1 6 HELIX 14 14 TYR B 153 ARG B 158 1 6 HELIX 15 15 GLY E 17 THR E 31 1 15 HELIX 16 16 LYS E 56 LYS E 66 1 11 HELIX 17 17 ASN E 104 GLU E 121 1 18 HELIX 18 18 SER E 133 ASN E 138 1 6 HELIX 19 19 ASN E 146 GLU E 151 1 6 HELIX 20 20 TYR E 153 ARG E 158 1 6 HELIX 21 21 GLY F 17 THR F 31 1 15 HELIX 22 22 VAL F 52 ILE F 55 5 4 HELIX 23 23 LYS F 56 LYS F 66 1 11 HELIX 24 24 ASN F 104 GLU F 121 1 18 HELIX 25 25 SER F 133 ASN F 138 1 6 HELIX 26 26 ASN F 146 GLU F 151 1 6 HELIX 27 27 TYR F 153 ARG F 158 1 6 SHEET 1 A 6 LYS A 2 ASN A 12 0 SHEET 2 A 6 ALA A 165 GLU A 173 -1 O GLU A 171 N LYS A 4 SHEET 3 A 6 GLY A 126 PRO A 132 1 N LEU A 129 O VAL A 170 SHEET 4 A 6 ALA A 95 TRP A 100 1 N ALA A 97 O GLY A 126 SHEET 5 A 6 LEU A 85 MET A 90 -1 N LYS A 89 O PHE A 96 SHEET 6 A 6 ALA A 69 HIS A 72 -1 N ALA A 69 O VAL A 88 SHEET 1 B 2 VAL A 42 ILE A 43 0 SHEET 2 B 2 SER A 176 VAL A 177 1 O SER A 176 N ILE A 43 SHEET 1 C 6 LYS B 2 ASN B 12 0 SHEET 2 C 6 ALA B 165 GLU B 173 -1 O ILE B 169 N GLU B 7 SHEET 3 C 6 ILE B 124 PRO B 132 1 N GLY B 127 O TYR B 166 SHEET 4 C 6 ALA B 95 TRP B 100 1 N GLU B 99 O ILE B 130 SHEET 5 C 6 GLY B 83 MET B 90 -1 N LYS B 89 O PHE B 96 SHEET 6 C 6 ALA B 69 VAL B 74 -1 N ALA B 69 O VAL B 88 SHEET 1 D 2 VAL B 42 ILE B 43 0 SHEET 2 D 2 SER B 176 VAL B 177 1 O SER B 176 N ILE B 43 SHEET 1 E 6 LYS E 2 ASN E 11 0 SHEET 2 E 6 TYR E 166 GLU E 173 -1 O GLU E 171 N ARG E 5 SHEET 3 E 6 GLY E 126 PRO E 132 1 N LEU E 129 O VAL E 170 SHEET 4 E 6 ALA E 95 TRP E 100 1 N GLU E 99 O ILE E 130 SHEET 5 E 6 LEU E 85 MET E 90 -1 N LYS E 89 O PHE E 96 SHEET 6 E 6 ALA E 69 HIS E 72 -1 N ALA E 69 O VAL E 88 SHEET 1 F 2 VAL E 42 ILE E 43 0 SHEET 2 F 2 SER E 176 VAL E 177 1 O SER E 176 N ILE E 43 SHEET 1 G 5 LYS F 2 ASN F 12 0 SHEET 2 G 5 ALA F 165 GLU F 173 -1 O ILE F 169 N GLU F 7 SHEET 3 G 5 ILE F 124 PRO F 132 1 N LEU F 131 O VAL F 170 SHEET 4 G 5 LYS F 94 TRP F 100 1 N ALA F 95 O ILE F 125 SHEET 5 G 5 VAL F 88 ILE F 91 -1 N LYS F 89 O PHE F 96 SHEET 1 H 2 VAL F 42 ILE F 43 0 SHEET 2 H 2 SER F 176 VAL F 177 1 O SER F 176 N ILE F 43 SHEET 1 I 2 HIS F 72 VAL F 74 0 SHEET 2 I 2 GLY F 83 LEU F 85 -1 O LEU F 85 N HIS F 72 LINK OE2 GLU A 71 CA CA A 196 1555 1555 3.11 LINK OD2 ASP A 86 CA CA A 195 1555 1555 2.39 LINK OD1 ASP A 86 CA CA A 195 1555 1555 2.99 LINK OD1 ASP A 86 CA CA A 196 1555 1555 2.27 LINK O TRP A 100 CA CA A 195 1555 1555 2.35 LINK CA CA A 195 O HOH A 262 1555 1555 2.58 LINK CA CA A 195 O HOH A 640 1555 1555 2.41 LINK CA CA A 195 OP1 DG D 5 1555 1555 2.18 LINK CA CA A 195 O HOH D 254 1555 1555 2.42 LINK CA CA A 196 O HOH A 200 1555 1555 2.32 LINK CA CA A 196 O HOH A 228 1555 1555 2.65 LINK CA CA A 196 O HOH A 343 1555 1555 2.33 LINK CA CA A 196 O3' DG D 4 1555 1555 2.91 LINK CA CA A 196 OP1 DG D 5 1555 1555 2.45 LINK CA CA A 196 O HOH D 258 1555 1555 3.01 LINK OD1 ASP B 86 CA CA B 195 1555 1555 2.39 LINK OE2 GLU B 99 CA CA B 195 1555 1555 2.48 LINK OE1 GLU B 99 CA CA B 195 1555 1555 2.82 LINK CA CA B 195 O HOH B 196 1555 1555 2.46 LINK CA CA B 195 O HOH B 655 1555 1555 2.38 LINK CA CA B 195 OP1 DG C 5 1555 1555 2.36 LINK CA CA B 195 O HOH C 256 1555 1555 2.36 LINK OD2 ASP E 86 CA CA E 195 1555 1555 2.36 LINK OD1 ASP E 86 CA CA E 195 1555 1555 2.95 LINK OD1 ASP E 86 CA CA H 13 1555 1555 2.44 LINK O TRP E 100 CA CA E 195 1555 1555 2.34 LINK CA CA E 195 O HOH E 197 1555 1555 2.68 LINK CA CA E 195 O HOH E 665 1555 1555 2.45 LINK CA CA E 195 OP1 DG H 5 1555 1555 2.26 LINK CA CA E 195 O HOH H 35 1555 1555 2.50 LINK O HOH E 220 CA CA H 13 1555 1555 2.62 LINK O HOH E 705 CA CA H 13 1555 1555 2.18 LINK O HOH E 706 CA CA H 13 1555 1555 2.48 LINK OD1 ASP F 86 CA CA F 195 1555 1555 2.30 LINK OE2 GLU F 99 CA CA F 195 1555 1555 2.45 LINK OE1 GLU F 99 CA CA F 195 1555 1555 2.69 LINK CA CA F 195 O HOH F 612 1555 1555 2.34 LINK CA CA F 195 O HOH F 613 1555 1555 2.31 LINK CA CA F 195 O HOH F 634 1555 1555 2.67 LINK CA CA F 195 OP1 DG G 5 1555 1555 2.49 LINK O3' DG H 4 CA CA H 13 1555 1555 2.78 LINK OP1 DG H 5 CA CA H 13 1555 1555 2.63 CISPEP 1 TRP A 34 PRO A 35 0 -7.05 CISPEP 2 PRO B 16 GLY B 17 0 12.72 CISPEP 3 TRP B 34 PRO B 35 0 -4.92 CISPEP 4 TRP E 34 PRO E 35 0 -7.12 CISPEP 5 TRP F 34 PRO F 35 0 -8.49 SITE 1 AC1 6 ASP A 86 TRP A 100 HOH A 262 HOH A 640 SITE 2 AC1 6 DG D 5 HOH D 254 SITE 1 AC2 8 GLU A 71 ASP A 86 HOH A 200 HOH A 228 SITE 2 AC2 8 HOH A 343 DG D 4 DG D 5 HOH D 258 SITE 1 AC3 6 ASP B 86 GLU B 99 HOH B 196 HOH B 655 SITE 2 AC3 6 DG C 5 HOH C 256 SITE 1 AC4 6 ASP E 86 TRP E 100 HOH E 197 HOH E 665 SITE 2 AC4 6 DG H 5 HOH H 35 SITE 1 AC5 6 ASP F 86 GLU F 99 HOH F 612 HOH F 613 SITE 2 AC5 6 HOH F 634 DG G 5 SITE 1 AC6 7 GLU E 71 ASP E 86 HOH E 220 HOH E 705 SITE 2 AC6 7 HOH E 706 DG H 4 DG H 5 CRYST1 80.982 83.075 119.670 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012348 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012037 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008356 0.00000