HEADER NUCLEAR PROTEIN 11-AUG-10 3ODT TITLE CRYSTAL STRUCTURE OF WD40 BETA PROPELLER DOMAIN OF DOA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DOA1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: WD40 BETA PROPELLER DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: DOA1, UFD3, ZZZ4, YKL213C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITIN, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.PASHKOVA,L.GAKHAR,S.C.WINISTORFER,L.YU,S.RAMASWAMY,R.C.PIPER REVDAT 2 25-DEC-19 3ODT 1 REMARK SEQADV LINK REVDAT 1 01-DEC-10 3ODT 0 JRNL AUTH N.PASHKOVA,L.GAKHAR,S.C.WINISTORFER,L.YU,S.RAMASWAMY, JRNL AUTH 2 R.C.PIPER JRNL TITL WD40 REPEAT PROPELLERS DEFINE A UBIQUITIN-BINDING DOMAIN JRNL TITL 2 THAT REGULATES TURNOVER OF F BOX PROTEINS. JRNL REF MOL.CELL V. 40 433 2010 JRNL REFN ISSN 1097-2765 JRNL PMID 21070969 JRNL DOI 10.1016/J.MOLCEL.2010.10.018 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 107429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 5390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.8609 - 2.9077 0.99 11148 567 0.1289 0.1392 REMARK 3 2 2.9077 - 2.3082 0.99 10981 583 0.1328 0.1595 REMARK 3 3 2.3082 - 2.0165 0.98 10887 574 0.1251 0.1637 REMARK 3 4 2.0165 - 1.8322 0.97 10816 568 0.1297 0.1743 REMARK 3 5 1.8322 - 1.7009 0.95 10530 574 0.1239 0.1898 REMARK 3 6 1.7009 - 1.6006 0.94 10292 574 0.1224 0.1890 REMARK 3 7 1.6006 - 1.5205 0.92 10145 538 0.1332 0.2114 REMARK 3 8 1.5205 - 1.4543 0.91 10115 511 0.1593 0.2358 REMARK 3 9 1.4543 - 1.3983 0.87 9587 520 0.2264 0.3071 REMARK 3 10 1.3983 - 1.3500 0.68 7538 381 0.2555 0.3387 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.60 REMARK 3 SHRINKAGE RADIUS : 0.41 REMARK 3 K_SOL : 0.42 REMARK 3 B_SOL : 36.61 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12390 REMARK 3 B22 (A**2) : -0.21310 REMARK 3 B33 (A**2) : 0.08920 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.39320 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4781 REMARK 3 ANGLE : 1.390 6493 REMARK 3 CHIRALITY : 0.084 736 REMARK 3 PLANARITY : 0.007 823 REMARK 3 DIHEDRAL : 12.719 1696 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ODT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060989. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97864,0.97880, 0.96411 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107515 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 29.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 3.240 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.64 REMARK 200 R MERGE FOR SHELL (I) : 0.25400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 0.1 M CACL2, 15% PEG 4000, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.99800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 ILE A -3 REMARK 465 ASP A -2 REMARK 465 PRO A -1 REMARK 465 LEU A 92 REMARK 465 GLU A 297 REMARK 465 ASP A 298 REMARK 465 GLU A 299 REMARK 465 ILE A 300 REMARK 465 LYS A 301 REMARK 465 GLY A 302 REMARK 465 GLU A 303 REMARK 465 LEU A 304 REMARK 465 ARG A 305 REMARK 465 SER A 306 REMARK 465 GLY A 307 REMARK 465 CYS A 308 REMARK 465 GLY B -4 REMARK 465 ILE B -3 REMARK 465 ASP B -2 REMARK 465 PRO B -1 REMARK 465 SER B 296 REMARK 465 GLU B 297 REMARK 465 ASP B 298 REMARK 465 GLU B 299 REMARK 465 ILE B 300 REMARK 465 LYS B 301 REMARK 465 GLY B 302 REMARK 465 GLU B 303 REMARK 465 LEU B 304 REMARK 465 ARG B 305 REMARK 465 SER B 306 REMARK 465 GLY B 307 REMARK 465 CYS B 308 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 461 O HOH A 838 2.09 REMARK 500 O HOH B 560 O HOH B 951 2.09 REMARK 500 N PHE A 0 O HOH B 1002 2.10 REMARK 500 O HOH A 400 O HOH A 759 2.12 REMARK 500 O HOH B 359 O HOH B 741 2.15 REMARK 500 O HOH B 451 O HOH B 1001 2.16 REMARK 500 OH TYR B 51 O HOH A 735 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 42 ND2 ASN A 167 2557 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 42 -81.90 -107.34 REMARK 500 THR A 76 -0.79 83.83 REMARK 500 THR A 76 -1.08 83.83 REMARK 500 LYS A 119 13.60 80.10 REMARK 500 ALA A 135 -40.32 -171.00 REMARK 500 ASN A 167 -124.38 65.68 REMARK 500 SER A 221 -154.58 -144.28 REMARK 500 ASP B 43 -65.26 75.86 REMARK 500 THR B 76 -3.53 81.57 REMARK 500 THR B 76 -7.64 81.57 REMARK 500 ALA B 135 -39.32 -168.16 REMARK 500 ASN B 167 -127.54 54.40 REMARK 500 ASN B 179 42.91 -100.99 REMARK 500 SER B 221 -155.33 -150.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 687 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A 694 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A 724 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A 743 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH A 816 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A 819 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 840 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A 941 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 952 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A1010 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A1081 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B 713 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH B 733 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH B 774 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH B 855 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 865 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH B 897 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B1024 DISTANCE = 7.12 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 309 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 24 OD2 REMARK 620 2 HOH A 869 O 86.1 REMARK 620 3 HOH A 349 O 85.4 87.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 309 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 24 OD2 REMARK 620 2 HOH B 318 O 87.4 REMARK 620 3 HOH B 342 O 86.8 87.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 310 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 280 O REMARK 620 2 ASP A 15 OD1 83.6 REMARK 620 3 HOH B 341 O 86.6 169.5 REMARK 620 4 HOH B 389 O 145.8 126.6 63.8 REMARK 620 5 HOH B 684 O 128.8 83.7 99.5 75.8 REMARK 620 6 ASN A 282 OD1 78.7 92.1 89.8 84.1 151.1 REMARK 620 7 HOH B 951 O 144.2 62.8 127.5 63.9 62.8 89.8 REMARK 620 8 HOH B 669 O 75.6 91.4 82.3 114.3 55.4 153.5 115.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 310 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 280 O REMARK 620 2 HOH A 620 O 158.4 REMARK 620 3 HOH A 557 O 132.1 69.0 REMARK 620 4 ASP B 15 OD1 78.7 116.9 74.3 REMARK 620 5 HOH A 949 O 75.2 116.7 67.2 91.9 REMARK 620 6 HOH A 837 O 89.2 74.4 115.9 167.8 86.5 REMARK 620 7 ASN B 282 OD1 80.9 83.3 138.4 92.9 154.1 83.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 311 DBREF 3ODT A 2 300 UNP P36037 DOA1_YEAST 2 300 DBREF 3ODT B 2 300 UNP P36037 DOA1_YEAST 2 300 SEQADV 3ODT GLY A -4 UNP P36037 EXPRESSION TAG SEQADV 3ODT ILE A -3 UNP P36037 EXPRESSION TAG SEQADV 3ODT ASP A -2 UNP P36037 EXPRESSION TAG SEQADV 3ODT PRO A -1 UNP P36037 EXPRESSION TAG SEQADV 3ODT PHE A 0 UNP P36037 EXPRESSION TAG SEQADV 3ODT THR A 1 UNP P36037 EXPRESSION TAG SEQADV 3ODT LYS A 301 UNP P36037 EXPRESSION TAG SEQADV 3ODT GLY A 302 UNP P36037 EXPRESSION TAG SEQADV 3ODT GLU A 303 UNP P36037 EXPRESSION TAG SEQADV 3ODT LEU A 304 UNP P36037 EXPRESSION TAG SEQADV 3ODT ARG A 305 UNP P36037 EXPRESSION TAG SEQADV 3ODT SER A 306 UNP P36037 EXPRESSION TAG SEQADV 3ODT GLY A 307 UNP P36037 EXPRESSION TAG SEQADV 3ODT CYS A 308 UNP P36037 EXPRESSION TAG SEQADV 3ODT GLY B -4 UNP P36037 EXPRESSION TAG SEQADV 3ODT ILE B -3 UNP P36037 EXPRESSION TAG SEQADV 3ODT ASP B -2 UNP P36037 EXPRESSION TAG SEQADV 3ODT PRO B -1 UNP P36037 EXPRESSION TAG SEQADV 3ODT PHE B 0 UNP P36037 EXPRESSION TAG SEQADV 3ODT THR B 1 UNP P36037 EXPRESSION TAG SEQADV 3ODT LYS B 301 UNP P36037 EXPRESSION TAG SEQADV 3ODT GLY B 302 UNP P36037 EXPRESSION TAG SEQADV 3ODT GLU B 303 UNP P36037 EXPRESSION TAG SEQADV 3ODT LEU B 304 UNP P36037 EXPRESSION TAG SEQADV 3ODT ARG B 305 UNP P36037 EXPRESSION TAG SEQADV 3ODT SER B 306 UNP P36037 EXPRESSION TAG SEQADV 3ODT GLY B 307 UNP P36037 EXPRESSION TAG SEQADV 3ODT CYS B 308 UNP P36037 EXPRESSION TAG SEQRES 1 A 313 GLY ILE ASP PRO PHE THR GLY TYR GLN LEU SER ALA THR SEQRES 2 A 313 LEU LYS GLY HIS ASP GLN ASP VAL ARG ASP VAL VAL ALA SEQRES 3 A 313 VAL ASP ASP SER LYS VAL ALA SER VAL SER ARG ASP GLY SEQRES 4 A 313 THR VAL ARG LEU TRP SER LYS ASP ASP GLN TRP LEU GLY SEQRES 5 A 313 THR VAL VAL TYR THR GLY GLN GLY PHE LEU ASN SER VAL SEQRES 6 A 313 CYS TYR ASP SER GLU LYS GLU LEU LEU LEU PHE GLY GLY SEQRES 7 A 313 LYS ASP THR MSE ILE ASN GLY VAL PRO LEU PHE ALA THR SEQRES 8 A 313 SER GLY GLU ASP PRO LEU TYR THR LEU ILE GLY HIS GLN SEQRES 9 A 313 GLY ASN VAL CYS SER LEU SER PHE GLN ASP GLY VAL VAL SEQRES 10 A 313 ILE SER GLY SER TRP ASP LYS THR ALA LYS VAL TRP LYS SEQRES 11 A 313 GLU GLY SER LEU VAL TYR ASN LEU GLN ALA HIS ASN ALA SEQRES 12 A 313 SER VAL TRP ASP ALA LYS VAL VAL SER PHE SER GLU ASN SEQRES 13 A 313 LYS PHE LEU THR ALA SER ALA ASP LYS THR ILE LYS LEU SEQRES 14 A 313 TRP GLN ASN ASP LYS VAL ILE LYS THR PHE SER GLY ILE SEQRES 15 A 313 HIS ASN ASP VAL VAL ARG HIS LEU ALA VAL VAL ASP ASP SEQRES 16 A 313 GLY HIS PHE ILE SER CYS SER ASN ASP GLY LEU ILE LYS SEQRES 17 A 313 LEU VAL ASP MSE HIS THR GLY ASP VAL LEU ARG THR TYR SEQRES 18 A 313 GLU GLY HIS GLU SER PHE VAL TYR CYS ILE LYS LEU LEU SEQRES 19 A 313 PRO ASN GLY ASP ILE VAL SER CYS GLY GLU ASP ARG THR SEQRES 20 A 313 VAL ARG ILE TRP SER LYS GLU ASN GLY SER LEU LYS GLN SEQRES 21 A 313 VAL ILE THR LEU PRO ALA ILE SER ILE TRP SER VAL ASP SEQRES 22 A 313 CYS MSE SER ASN GLY ASP ILE ILE VAL GLY SER SER ASP SEQRES 23 A 313 ASN LEU VAL ARG ILE PHE SER GLN GLU LYS SER ARG TRP SEQRES 24 A 313 ALA SER GLU ASP GLU ILE LYS GLY GLU LEU ARG SER GLY SEQRES 25 A 313 CYS SEQRES 1 B 313 GLY ILE ASP PRO PHE THR GLY TYR GLN LEU SER ALA THR SEQRES 2 B 313 LEU LYS GLY HIS ASP GLN ASP VAL ARG ASP VAL VAL ALA SEQRES 3 B 313 VAL ASP ASP SER LYS VAL ALA SER VAL SER ARG ASP GLY SEQRES 4 B 313 THR VAL ARG LEU TRP SER LYS ASP ASP GLN TRP LEU GLY SEQRES 5 B 313 THR VAL VAL TYR THR GLY GLN GLY PHE LEU ASN SER VAL SEQRES 6 B 313 CYS TYR ASP SER GLU LYS GLU LEU LEU LEU PHE GLY GLY SEQRES 7 B 313 LYS ASP THR MSE ILE ASN GLY VAL PRO LEU PHE ALA THR SEQRES 8 B 313 SER GLY GLU ASP PRO LEU TYR THR LEU ILE GLY HIS GLN SEQRES 9 B 313 GLY ASN VAL CYS SER LEU SER PHE GLN ASP GLY VAL VAL SEQRES 10 B 313 ILE SER GLY SER TRP ASP LYS THR ALA LYS VAL TRP LYS SEQRES 11 B 313 GLU GLY SER LEU VAL TYR ASN LEU GLN ALA HIS ASN ALA SEQRES 12 B 313 SER VAL TRP ASP ALA LYS VAL VAL SER PHE SER GLU ASN SEQRES 13 B 313 LYS PHE LEU THR ALA SER ALA ASP LYS THR ILE LYS LEU SEQRES 14 B 313 TRP GLN ASN ASP LYS VAL ILE LYS THR PHE SER GLY ILE SEQRES 15 B 313 HIS ASN ASP VAL VAL ARG HIS LEU ALA VAL VAL ASP ASP SEQRES 16 B 313 GLY HIS PHE ILE SER CYS SER ASN ASP GLY LEU ILE LYS SEQRES 17 B 313 LEU VAL ASP MSE HIS THR GLY ASP VAL LEU ARG THR TYR SEQRES 18 B 313 GLU GLY HIS GLU SER PHE VAL TYR CYS ILE LYS LEU LEU SEQRES 19 B 313 PRO ASN GLY ASP ILE VAL SER CYS GLY GLU ASP ARG THR SEQRES 20 B 313 VAL ARG ILE TRP SER LYS GLU ASN GLY SER LEU LYS GLN SEQRES 21 B 313 VAL ILE THR LEU PRO ALA ILE SER ILE TRP SER VAL ASP SEQRES 22 B 313 CYS MSE SER ASN GLY ASP ILE ILE VAL GLY SER SER ASP SEQRES 23 B 313 ASN LEU VAL ARG ILE PHE SER GLN GLU LYS SER ARG TRP SEQRES 24 B 313 ALA SER GLU ASP GLU ILE LYS GLY GLU LEU ARG SER GLY SEQRES 25 B 313 CYS MODRES 3ODT MSE A 77 MET SELENOMETHIONINE MODRES 3ODT MSE A 207 MET SELENOMETHIONINE MODRES 3ODT MSE A 270 MET SELENOMETHIONINE MODRES 3ODT MSE B 77 MET SELENOMETHIONINE MODRES 3ODT MSE B 207 MET SELENOMETHIONINE MODRES 3ODT MSE B 270 MET SELENOMETHIONINE HET MSE A 77 16 HET MSE A 207 16 HET MSE A 270 16 HET MSE B 77 16 HET MSE B 207 16 HET MSE B 270 16 HET CA A 309 1 HET CA A 310 1 HET MES A 311 12 HET CA B 309 1 HET CA B 310 1 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 CA 4(CA 2+) FORMUL 5 MES C6 H13 N O4 S FORMUL 8 HOH *1028(H2 O) HELIX 1 1 GLU A 290 TRP A 294 5 5 HELIX 2 2 GLU B 290 TRP B 294 5 5 SHEET 1 A 4 GLN A 4 LEU A 9 0 SHEET 2 A 4 VAL A 284 SER A 288 -1 O ILE A 286 N SER A 6 SHEET 3 A 4 ILE A 275 SER A 279 -1 N ILE A 275 O PHE A 287 SHEET 4 A 4 ILE A 264 CYS A 269 -1 N ASP A 268 O ILE A 276 SHEET 1 B 4 VAL A 16 ASP A 23 0 SHEET 2 B 4 LYS A 26 SER A 31 -1 O ALA A 28 N VAL A 20 SHEET 3 B 4 THR A 35 LYS A 41 -1 O TRP A 39 N VAL A 27 SHEET 4 B 4 TRP A 45 THR A 52 -1 O LEU A 46 N SER A 40 SHEET 1 C 4 LEU A 57 ASP A 63 0 SHEET 2 C 4 LEU A 68 GLY A 73 -1 O LEU A 68 N ASP A 63 SHEET 3 C 4 ILE A 78 PRO A 82 -1 O VAL A 81 N LEU A 69 SHEET 4 C 4 THR A 94 LEU A 95 -1 O LEU A 95 N ILE A 78 SHEET 1 D 4 VAL A 102 GLN A 108 0 SHEET 2 D 4 VAL A 111 SER A 116 -1 O ILE A 113 N SER A 106 SHEET 3 D 4 THR A 120 LYS A 125 -1 O TRP A 124 N VAL A 112 SHEET 4 D 4 SER A 128 GLN A 134 -1 O LEU A 133 N ALA A 121 SHEET 1 E 4 VAL A 140 SER A 147 0 SHEET 2 E 4 LYS A 152 SER A 157 -1 O LEU A 154 N LYS A 144 SHEET 3 E 4 ILE A 162 GLN A 166 -1 O TRP A 165 N PHE A 153 SHEET 4 E 4 LYS A 169 PHE A 174 -1 O PHE A 174 N ILE A 162 SHEET 1 F 4 VAL A 182 ASP A 189 0 SHEET 2 F 4 HIS A 192 SER A 197 -1 O ILE A 194 N ALA A 186 SHEET 3 F 4 LEU A 201 ASP A 206 -1 O VAL A 205 N PHE A 193 SHEET 4 F 4 VAL A 212 GLU A 217 -1 O TYR A 216 N ILE A 202 SHEET 1 G 4 VAL A 223 LEU A 228 0 SHEET 2 G 4 ILE A 234 GLY A 238 -1 O VAL A 235 N LYS A 227 SHEET 3 G 4 THR A 242 TRP A 246 -1 O ARG A 244 N SER A 236 SHEET 4 G 4 LEU A 253 THR A 258 -1 O ILE A 257 N VAL A 243 SHEET 1 H 4 GLN B 4 LEU B 9 0 SHEET 2 H 4 VAL B 284 SER B 288 -1 O ILE B 286 N SER B 6 SHEET 3 H 4 ILE B 275 SER B 279 -1 N VAL B 277 O ARG B 285 SHEET 4 H 4 ILE B 264 CYS B 269 -1 N ASP B 268 O ILE B 276 SHEET 1 I 4 VAL B 16 ASP B 23 0 SHEET 2 I 4 LYS B 26 SER B 31 -1 O ALA B 28 N VAL B 20 SHEET 3 I 4 THR B 35 LYS B 41 -1 O TRP B 39 N VAL B 27 SHEET 4 I 4 TRP B 45 THR B 52 -1 O THR B 48 N LEU B 38 SHEET 1 J 4 LEU B 57 ASP B 63 0 SHEET 2 J 4 LEU B 68 GLY B 73 -1 O LEU B 68 N ASP B 63 SHEET 3 J 4 ILE B 78 PRO B 82 -1 O VAL B 81 N LEU B 69 SHEET 4 J 4 TYR B 93 LEU B 95 -1 O LEU B 95 N ILE B 78 SHEET 1 K 4 VAL B 102 GLN B 108 0 SHEET 2 K 4 VAL B 111 SER B 116 -1 O ILE B 113 N SER B 106 SHEET 3 K 4 THR B 120 LYS B 125 -1 O TRP B 124 N VAL B 112 SHEET 4 K 4 SER B 128 GLN B 134 -1 O LEU B 133 N ALA B 121 SHEET 1 L 4 VAL B 140 SER B 147 0 SHEET 2 L 4 LYS B 152 SER B 157 -1 O LEU B 154 N LYS B 144 SHEET 3 L 4 ILE B 162 GLN B 166 -1 O TRP B 165 N PHE B 153 SHEET 4 L 4 LYS B 169 PHE B 174 -1 O PHE B 174 N ILE B 162 SHEET 1 M 4 VAL B 182 ASP B 189 0 SHEET 2 M 4 HIS B 192 SER B 197 -1 O ILE B 194 N ALA B 186 SHEET 3 M 4 LEU B 201 ASP B 206 -1 O VAL B 205 N PHE B 193 SHEET 4 M 4 VAL B 212 GLU B 217 -1 O TYR B 216 N ILE B 202 SHEET 1 N 4 VAL B 223 LEU B 228 0 SHEET 2 N 4 ILE B 234 GLY B 238 -1 O VAL B 235 N LYS B 227 SHEET 3 N 4 THR B 242 TRP B 246 -1 O ARG B 244 N SER B 236 SHEET 4 N 4 LEU B 253 THR B 258 -1 O ILE B 257 N VAL B 243 LINK C THR A 76 N AMSE A 77 1555 1555 1.33 LINK C THR A 76 N BMSE A 77 1555 1555 1.33 LINK C AMSE A 77 N ILE A 78 1555 1555 1.33 LINK C BMSE A 77 N ILE A 78 1555 1555 1.32 LINK C ASP A 206 N AMSE A 207 1555 1555 1.32 LINK C ASP A 206 N BMSE A 207 1555 1555 1.33 LINK C AMSE A 207 N HIS A 208 1555 1555 1.32 LINK C BMSE A 207 N HIS A 208 1555 1555 1.33 LINK C ACYS A 269 N AMSE A 270 1555 1555 1.33 LINK C BCYS A 269 N BMSE A 270 1555 1555 1.32 LINK C AMSE A 270 N SER A 271 1555 1555 1.33 LINK C BMSE A 270 N SER A 271 1555 1555 1.32 LINK C THR B 76 N AMSE B 77 1555 1555 1.33 LINK C THR B 76 N BMSE B 77 1555 1555 1.33 LINK C AMSE B 77 N ILE B 78 1555 1555 1.34 LINK C BMSE B 77 N ILE B 78 1555 1555 1.33 LINK C ASP B 206 N AMSE B 207 1555 1555 1.33 LINK C ASP B 206 N BMSE B 207 1555 1555 1.33 LINK C AMSE B 207 N HIS B 208 1555 1555 1.33 LINK C BMSE B 207 N HIS B 208 1555 1555 1.33 LINK C ACYS B 269 N AMSE B 270 1555 1555 1.33 LINK C BCYS B 269 N BMSE B 270 1555 1555 1.33 LINK C AMSE B 270 N SER B 271 1555 1555 1.33 LINK C BMSE B 270 N SER B 271 1555 1555 1.33 LINK OD2 ASP B 24 CA CA A 309 1555 1555 2.27 LINK OD2 ASP A 24 CA CA B 309 1555 1555 2.29 LINK O SER A 280 CA CA B 310 1555 1555 2.31 LINK O SER B 280 CA CA A 310 1555 1555 2.32 LINK CA CA A 310 O HOH A 620 1555 1555 2.32 LINK CA CA B 309 O HOH B 318 1555 1555 2.34 LINK CA CA A 310 O HOH A 557 1555 1555 2.36 LINK OD1 ASP B 15 CA CA A 310 1555 1555 2.36 LINK CA CA A 309 O HOH A 869 1555 1555 2.37 LINK OD1 ASP A 15 CA CA B 310 1555 1555 2.37 LINK CA CA B 309 O HOH B 342 1555 1555 2.38 LINK CA CA B 310 O HOH B 341 1555 1555 2.39 LINK CA CA A 309 O HOH A 349 1555 1555 2.40 LINK CA CA A 310 O HOH A 949 1555 1555 2.40 LINK CA CA B 310 O HOH B 389 1555 1555 2.42 LINK CA CA B 310 O HOH B 684 1555 1555 2.42 LINK CA CA A 310 O HOH A 837 1555 1555 2.43 LINK OD1 ASN B 282 CA CA A 310 1555 1555 2.49 LINK OD1 ASN A 282 CA CA B 310 1555 1555 2.50 LINK CA CA B 310 O HOH B 951 1555 1555 2.53 LINK CA CA B 310 O HOH B 669 1555 1555 2.64 SITE 1 AC1 5 ASP A 24 GLU A 239 ILE A 262 HOH B 318 SITE 2 AC1 5 HOH B 342 SITE 1 AC2 8 ASP A 15 SER A 280 ASN A 282 HOH B 341 SITE 2 AC2 8 HOH B 389 HOH B 669 HOH B 684 HOH B 951 SITE 1 AC3 5 ASP B 24 GLU B 239 ILE B 262 HOH A 349 SITE 2 AC3 5 HOH A 869 SITE 1 AC4 7 ASP B 15 SER B 280 ASN B 282 HOH A 557 SITE 2 AC4 7 HOH A 620 HOH A 837 HOH A 949 SITE 1 AC5 12 GLU B 220 ASP B 240 ARG B 241 THR B 242 SITE 2 AC5 12 ARG B 244 THR B 258 ASN B 272 ARG B 293 SITE 3 AC5 12 HOH A 494 HOH A 582 HOH A 869 HOH A1040 CRYST1 33.656 87.996 92.265 90.00 96.73 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029712 0.000000 0.003506 0.00000 SCALE2 0.000000 0.011364 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010914 0.00000