data_3ODV # _entry.id 3ODV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3ODV RCSB RCSB060991 WWPDB D_1000060991 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ODV _pdbx_database_status.recvd_initial_deposition_date 2010-08-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pentelute, B.L.' 1 'Mandal, K.' 2 'Gates, Z.P.' 3 'Sawaya, M.R.' 4 'Yeates, T.O.' 5 'Kent, S.B.H.' 6 # _citation.id primary _citation.title 'Total chemical synthesis and X-ray structure of kaliotoxin by racemic protein crystallography.' _citation.journal_abbrev 'Chem.Commun.(Camb.)' _citation.journal_volume 46 _citation.page_first 8174 _citation.page_last 8176 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1359-7345 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20877851 _citation.pdbx_database_id_DOI 10.1039/c0cc03148h # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Pentelute, B.L.' 1 primary 'Mandal, K.' 2 primary 'Gates, Z.P.' 3 primary 'Sawaya, M.R.' 4 primary 'Yeates, T.O.' 5 primary 'Kent, S.B.' 6 # _cell.entry_id 3ODV _cell.length_a 25.150 _cell.length_b 30.511 _cell.length_c 41.097 _cell.angle_alpha 109.39 _cell.angle_beta 97.39 _cell.angle_gamma 97.09 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3ODV _symmetry.space_group_name_H-M 'P -1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 2 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Potassium channel toxin alpha-KTx 3.1' 4165.052 2 ? ? L-Kaliotoxin ? 2 non-polymer syn 'trifluoroacetic acid' 114.023 2 ? ? ? ? 3 non-polymer syn 'CITRIC ACID' 192.124 2 ? ? ? ? 4 water nat water 18.015 90 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Kaliotoxin-1, KTX-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GVEINVKCSGSPQCLKPCKDAGMRFGKCMNRKCHCTPK _entity_poly.pdbx_seq_one_letter_code_can GVEINVKCSGSPQCLKPCKDAGMRFGKCMNRKCHCTPK _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 VAL n 1 3 GLU n 1 4 ILE n 1 5 ASN n 1 6 VAL n 1 7 LYS n 1 8 CYS n 1 9 SER n 1 10 GLY n 1 11 SER n 1 12 PRO n 1 13 GLN n 1 14 CYS n 1 15 LEU n 1 16 LYS n 1 17 PRO n 1 18 CYS n 1 19 LYS n 1 20 ASP n 1 21 ALA n 1 22 GLY n 1 23 MET n 1 24 ARG n 1 25 PHE n 1 26 GLY n 1 27 LYS n 1 28 CYS n 1 29 MET n 1 30 ASN n 1 31 ARG n 1 32 LYS n 1 33 CYS n 1 34 HIS n 1 35 CYS n 1 36 THR n 1 37 PRO n 1 38 LYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Androctonus mauretanicus mauretanicus' _pdbx_entity_src_syn.organism_common_name Scorpion _pdbx_entity_src_syn.ncbi_taxonomy_id 6860 _pdbx_entity_src_syn.details 'Chemical Synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KAX31_ANDMA _struct_ref.pdbx_db_accession P24662 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GVEINVKCSGSPQCLKPCKDAGMRFGKCMNRKCHCTPK _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3ODV A 1 ? 38 ? P24662 1 ? 38 ? 1 38 2 1 3ODV B 1 ? 38 ? P24662 1 ? 38 ? 1 38 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CIT non-polymer . 'CITRIC ACID' ? 'C6 H8 O7' 192.124 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TFA non-polymer . 'trifluoroacetic acid' ? 'C2 H F3 O2' 114.023 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3ODV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.74 _exptl_crystal.density_percent_sol 29.41 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '1.8 M sodium citrate tribasic dihydrate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2007-12-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.95373 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.95373 # _reflns.entry_id 3ODV _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 0.95 _reflns.number_obs 62285 _reflns.number_all 62285 _reflns.percent_possible_obs 88.2 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_netI_over_sigmaI 19.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 0.95 _reflns_shell.d_res_low 0.98 _reflns_shell.percent_possible_all 50.9 _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.pdbx_redundancy 3.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 3600 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3ODV _refine.ls_number_reflns_obs 59134 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.13 _refine.ls_d_res_high 0.95 _refine.ls_percent_reflns_obs 87.92 _refine.ls_R_factor_obs 0.18878 _refine.ls_R_factor_R_work 0.18800 _refine.ls_R_factor_R_free 0.20326 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 3130 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.970 _refine.correlation_coeff_Fo_to_Fc_free 0.966 _refine.B_iso_mean 10.564 _refine.aniso_B[1][1] 0.22 _refine.aniso_B[2][2] -0.53 _refine.aniso_B[3][3] 0.35 _refine.aniso_B[1][2] 0.12 _refine.aniso_B[1][3] -0.21 _refine.aniso_B[2][3] 0.10 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.025 _refine.overall_SU_ML 0.011 _refine.overall_SU_B 0.469 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.ls_R_factor_all ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 566 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.number_atoms_solvent 90 _refine_hist.number_atoms_total 696 _refine_hist.d_res_high 0.95 _refine_hist.d_res_low 38.13 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 840 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 674 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.646 2.058 ? 1142 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.872 3.000 ? 1666 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.446 5.000 ? 118 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 29.988 21.481 ? 27 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.919 15.000 ? 194 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.498 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.098 0.200 ? 110 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.021 ? 917 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 152 'X-RAY DIFFRACTION' ? r_mcbond_it 1.632 1.500 ? 496 'X-RAY DIFFRACTION' ? r_mcbond_other 0.449 1.500 ? 193 'X-RAY DIFFRACTION' ? r_mcangle_it 2.561 2.000 ? 821 'X-RAY DIFFRACTION' ? r_scbond_it 3.483 3.000 ? 344 'X-RAY DIFFRACTION' ? r_scangle_it 5.161 4.500 ? 306 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.232 3.000 ? 1514 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 0.950 _refine_ls_shell.d_res_low 0.975 _refine_ls_shell.number_reflns_R_work 2262 _refine_ls_shell.R_factor_R_work 0.494 _refine_ls_shell.percent_reflns_obs 45.08 _refine_ls_shell.R_factor_R_free 0.553 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 111 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3ODV _struct.title 'X-ray structure of kaliotoxin by racemic protein crystallography' _struct.pdbx_descriptor 'Potassium channel toxin alpha-KTx 3.1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ODV _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text 'Racemic protein, Direct methods, Toxin, chemical synthesis' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 10 ? GLN A 13 ? GLY A 10 GLN A 13 5 ? 4 HELX_P HELX_P2 2 CYS A 14 ? ALA A 21 ? CYS A 14 ALA A 21 1 ? 8 HELX_P HELX_P3 3 GLY B 10 ? GLN B 13 ? GLY B 10 GLN B 13 5 ? 4 HELX_P HELX_P4 4 CYS B 14 ? ALA B 21 ? CYS B 14 ALA B 21 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 8 SG ? ? ? 1_555 A CYS 28 SG ? ? A CYS 8 A CYS 28 1_555 ? ? ? ? ? ? ? 2.056 ? disulf2 disulf ? ? A CYS 14 SG ? ? ? 1_555 A CYS 33 SG ? ? A CYS 14 A CYS 33 1_555 ? ? ? ? ? ? ? 2.064 ? disulf3 disulf ? ? A CYS 18 SG ? ? ? 1_555 A CYS 35 SG ? ? A CYS 18 A CYS 35 1_555 ? ? ? ? ? ? ? 2.040 ? disulf4 disulf ? ? B CYS 8 SG ? ? ? 1_555 B CYS 28 SG ? ? B CYS 8 B CYS 28 1_555 ? ? ? ? ? ? ? 2.064 ? disulf5 disulf ? ? B CYS 14 SG ? ? ? 1_555 B CYS 33 SG ? ? B CYS 14 B CYS 33 1_555 ? ? ? ? ? ? ? 2.060 ? disulf6 disulf ? ? B CYS 18 SG ? ? ? 1_555 B CYS 35 SG ? ? B CYS 18 B CYS 35 1_555 ? ? ? ? ? ? ? 2.034 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 2 ? LYS A 7 ? VAL A 2 LYS A 7 A 2 LYS A 32 ? CYS A 35 ? LYS A 32 CYS A 35 A 3 GLY A 26 ? MET A 29 ? GLY A 26 MET A 29 B 1 VAL B 2 ? LYS B 7 ? VAL B 2 LYS B 7 B 2 LYS B 32 ? THR B 36 ? LYS B 32 THR B 36 B 3 ARG B 24 ? MET B 29 ? ARG B 24 MET B 29 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 2 ? N VAL A 2 O CYS A 35 ? O CYS A 35 A 2 3 O LYS A 32 ? O LYS A 32 N MET A 29 ? N MET A 29 B 1 2 N VAL B 2 ? N VAL B 2 O CYS B 35 ? O CYS B 35 B 2 3 O THR B 36 ? O THR B 36 N ARG B 24 ? N ARG B 24 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE TFA A 39' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE TFA B 39' AC3 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE CIT B 40' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE CIT B 41' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 GLY A 1 ? GLY A 1 . ? 1_555 ? 2 AC1 8 GLY A 26 ? GLY A 26 . ? 1_555 ? 3 AC1 8 LYS A 27 ? LYS A 27 . ? 1_555 ? 4 AC1 8 MET A 29 ? MET A 29 . ? 1_555 ? 5 AC1 8 HIS A 34 ? HIS A 34 . ? 1_555 ? 6 AC1 8 THR A 36 ? THR A 36 . ? 1_555 ? 7 AC1 8 HOH G . ? HOH A 55 . ? 1_555 ? 8 AC1 8 HOH G . ? HOH A 60 . ? 1_555 ? 9 AC2 6 GLY B 1 ? GLY B 1 . ? 1_555 ? 10 AC2 6 LYS B 27 ? LYS B 27 . ? 1_555 ? 11 AC2 6 MET B 29 ? MET B 29 . ? 1_555 ? 12 AC2 6 HIS B 34 ? HIS B 34 . ? 1_555 ? 13 AC2 6 HOH H . ? HOH B 54 . ? 1_555 ? 14 AC2 6 HOH H . ? HOH B 59 . ? 1_555 ? 15 AC3 7 SER B 9 ? SER B 9 . ? 1_555 ? 16 AC3 7 GLN B 13 ? GLN B 13 . ? 1_555 ? 17 AC3 7 ARG B 24 ? ARG B 24 . ? 1_565 ? 18 AC3 7 HOH H . ? HOH B 46 . ? 1_555 ? 19 AC3 7 HOH H . ? HOH B 48 . ? 1_555 ? 20 AC3 7 HOH H . ? HOH B 56 . ? 1_555 ? 21 AC3 7 HOH H . ? HOH B 77 . ? 1_565 ? 22 AC4 5 LYS A 27 ? LYS A 27 . ? 1_555 ? 23 AC4 5 LYS B 19 ? LYS B 19 . ? 1_555 ? 24 AC4 5 ARG B 24 ? ARG B 24 . ? 1_555 ? 25 AC4 5 LYS B 38 ? LYS B 38 . ? 1_555 ? 26 AC4 5 HOH H . ? HOH B 83 . ? 1_555 ? # _database_PDB_matrix.entry_id 3ODV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3ODV _atom_sites.fract_transf_matrix[1][1] 0.039761 _atom_sites.fract_transf_matrix[1][2] 0.004948 _atom_sites.fract_transf_matrix[1][3] 0.007379 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033028 _atom_sites.fract_transf_matrix[2][3] 0.012478 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026229 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 CYS 8 8 8 CYS CYS A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 CYS 18 18 18 CYS CYS A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 MET 23 23 23 MET MET A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 MET 29 29 29 MET MET A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 CYS 33 33 33 CYS CYS A . n A 1 34 HIS 34 34 34 HIS HIS A . n A 1 35 CYS 35 35 35 CYS CYS A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 LYS 38 38 38 LYS LYS A . n B 1 1 GLY 1 1 1 GLY GLY B . n B 1 2 VAL 2 2 2 VAL VAL B . n B 1 3 GLU 3 3 3 GLU GLU B . n B 1 4 ILE 4 4 4 ILE ILE B . n B 1 5 ASN 5 5 5 ASN ASN B . n B 1 6 VAL 6 6 6 VAL VAL B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 CYS 8 8 8 CYS CYS B . n B 1 9 SER 9 9 9 SER SER B . n B 1 10 GLY 10 10 10 GLY GLY B . n B 1 11 SER 11 11 11 SER SER B . n B 1 12 PRO 12 12 12 PRO PRO B . n B 1 13 GLN 13 13 13 GLN GLN B . n B 1 14 CYS 14 14 14 CYS CYS B . n B 1 15 LEU 15 15 15 LEU LEU B . n B 1 16 LYS 16 16 16 LYS LYS B . n B 1 17 PRO 17 17 17 PRO PRO B . n B 1 18 CYS 18 18 18 CYS CYS B . n B 1 19 LYS 19 19 19 LYS LYS B . n B 1 20 ASP 20 20 20 ASP ASP B . n B 1 21 ALA 21 21 21 ALA ALA B . n B 1 22 GLY 22 22 22 GLY GLY B . n B 1 23 MET 23 23 23 MET MET B . n B 1 24 ARG 24 24 24 ARG ARG B . n B 1 25 PHE 25 25 25 PHE PHE B . n B 1 26 GLY 26 26 26 GLY GLY B . n B 1 27 LYS 27 27 27 LYS LYS B . n B 1 28 CYS 28 28 28 CYS CYS B . n B 1 29 MET 29 29 29 MET MET B . n B 1 30 ASN 30 30 30 ASN ASN B . n B 1 31 ARG 31 31 31 ARG ARG B . n B 1 32 LYS 32 32 32 LYS LYS B . n B 1 33 CYS 33 33 33 CYS CYS B . n B 1 34 HIS 34 34 34 HIS HIS B . n B 1 35 CYS 35 35 35 CYS CYS B . n B 1 36 THR 36 36 36 THR THR B . n B 1 37 PRO 37 37 37 PRO PRO B . n B 1 38 LYS 38 38 38 LYS LYS B . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,G 2 1 B,D,E,F,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-10-20 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-03-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Other # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXD phasing . ? 1 REFMAC refinement 5.5.0109 ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET B 23 ? A -117.73 -160.15 2 1 PHE B 25 ? A 56.72 -134.34 3 1 PHE B 25 ? B -178.21 -177.61 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'trifluoroacetic acid' TFA 3 'CITRIC ACID' CIT 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TFA 1 39 2 TFA TFA A . D 2 TFA 1 39 1 TFA TFA B . E 3 CIT 1 40 3 CIT CIT B . F 3 CIT 1 41 1 CIT CIT B . G 4 HOH 1 40 2 HOH HOH A . G 4 HOH 2 41 41 HOH HOH A . G 4 HOH 3 42 6 HOH HOH A . G 4 HOH 4 43 43 HOH HOH A . G 4 HOH 5 44 8 HOH HOH A . G 4 HOH 6 45 10 HOH HOH A . G 4 HOH 7 46 11 HOH HOH A . G 4 HOH 8 47 15 HOH HOH A . G 4 HOH 9 48 20 HOH HOH A . G 4 HOH 10 49 21 HOH HOH A . G 4 HOH 11 50 50 HOH HOH A . G 4 HOH 12 51 22 HOH HOH A . G 4 HOH 13 52 24 HOH HOH A . G 4 HOH 14 53 53 HOH HOH A . G 4 HOH 15 54 25 HOH HOH A . G 4 HOH 16 55 31 HOH HOH A . G 4 HOH 17 56 32 HOH HOH A . G 4 HOH 18 57 35 HOH HOH A . G 4 HOH 19 58 58 HOH HOH A . G 4 HOH 20 59 59 HOH HOH A . G 4 HOH 21 60 60 HOH HOH A . G 4 HOH 22 62 62 HOH HOH A . G 4 HOH 23 64 64 HOH HOH A . G 4 HOH 24 67 67 HOH HOH A . G 4 HOH 25 78 78 HOH HOH A . G 4 HOH 26 79 79 HOH HOH A . G 4 HOH 27 83 83 HOH HOH A . G 4 HOH 28 86 86 HOH HOH A . G 4 HOH 29 87 87 HOH HOH A . G 4 HOH 30 92 92 HOH HOH A . G 4 HOH 31 93 93 HOH HOH A . G 4 HOH 32 94 94 HOH HOH A . G 4 HOH 33 101 101 HOH HOH A . G 4 HOH 34 103 103 HOH HOH A . G 4 HOH 35 104 104 HOH HOH A . G 4 HOH 36 105 105 HOH HOH A . G 4 HOH 37 107 107 HOH HOH A . G 4 HOH 38 109 109 HOH HOH A . G 4 HOH 39 110 110 HOH HOH A . G 4 HOH 40 111 111 HOH HOH A . G 4 HOH 41 112 112 HOH HOH A . G 4 HOH 42 113 113 HOH HOH A . G 4 HOH 43 114 114 HOH HOH A . H 4 HOH 1 42 42 HOH HOH B . H 4 HOH 2 43 1 HOH HOH B . H 4 HOH 3 44 44 HOH HOH B . H 4 HOH 4 45 3 HOH HOH B . H 4 HOH 5 46 46 HOH HOH B . H 4 HOH 6 47 47 HOH HOH B . H 4 HOH 7 48 4 HOH HOH B . H 4 HOH 8 49 49 HOH HOH B . H 4 HOH 9 50 5 HOH HOH B . H 4 HOH 10 51 7 HOH HOH B . H 4 HOH 11 52 52 HOH HOH B . H 4 HOH 12 53 9 HOH HOH B . H 4 HOH 13 54 12 HOH HOH B . H 4 HOH 14 55 55 HOH HOH B . H 4 HOH 15 56 56 HOH HOH B . H 4 HOH 16 57 57 HOH HOH B . H 4 HOH 17 58 13 HOH HOH B . H 4 HOH 18 59 17 HOH HOH B . H 4 HOH 19 60 19 HOH HOH B . H 4 HOH 20 61 61 HOH HOH B . H 4 HOH 21 62 23 HOH HOH B . H 4 HOH 22 63 63 HOH HOH B . H 4 HOH 23 64 26 HOH HOH B . H 4 HOH 24 65 28 HOH HOH B . H 4 HOH 25 66 66 HOH HOH B . H 4 HOH 26 67 29 HOH HOH B . H 4 HOH 27 68 68 HOH HOH B . H 4 HOH 28 69 69 HOH HOH B . H 4 HOH 29 70 30 HOH HOH B . H 4 HOH 30 71 33 HOH HOH B . H 4 HOH 31 72 72 HOH HOH B . H 4 HOH 32 73 73 HOH HOH B . H 4 HOH 33 74 74 HOH HOH B . H 4 HOH 34 75 75 HOH HOH B . H 4 HOH 35 76 76 HOH HOH B . H 4 HOH 36 77 34 HOH HOH B . H 4 HOH 37 78 36 HOH HOH B . H 4 HOH 38 79 37 HOH HOH B . H 4 HOH 39 80 38 HOH HOH B . H 4 HOH 40 81 81 HOH HOH B . H 4 HOH 41 82 39 HOH HOH B . H 4 HOH 42 83 40 HOH HOH B . H 4 HOH 43 89 89 HOH HOH B . H 4 HOH 44 91 91 HOH HOH B . H 4 HOH 45 100 100 HOH HOH B . H 4 HOH 46 106 106 HOH HOH B . H 4 HOH 47 108 108 HOH HOH B . #