HEADER TRANSFERASE 13-AUG-10 3OF1 TITLE CRYSTAL STRUCTURE OF BCY1, THE YEAST REGULATORY SUBUNIT OF PKA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE REGULATORY SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CAMP 1 AND CAMP 2 NUCLEOTIDE BINDING REGIONS; COMPND 5 SYNONYM: PKA REGULATORY SUBUNIT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: BCY1, REG1, SRA1, YIL033C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYCLIC NUCLEOTIDE BINDING DOMAIN, EVOLUTION, PKA SIGNALING, KEYWDS 2 REGULATORY SUBUNIT, CAMP-DEPENDENT PROTEIN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.RINALDI,J.WU,J.YANG,C.Y.RALSTON,B.SANKARAN,S.MORENO,S.S.TAYLOR REVDAT 2 06-SEP-23 3OF1 1 REMARK REVDAT 1 01-DEC-10 3OF1 0 JRNL AUTH J.RINALDI,J.WU,J.YANG,C.Y.RALSTON,B.SANKARAN,S.MORENO, JRNL AUTH 2 S.S.TAYLOR JRNL TITL STRUCTURE OF YEAST REGULATORY SUBUNIT: A GLIMPSE INTO THE JRNL TITL 2 EVOLUTION OF PKA SIGNALING. JRNL REF STRUCTURE V. 18 1471 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 21070946 JRNL DOI 10.1016/J.STR.2010.08.013 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 11232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 565 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 441 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 49.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1820 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 93 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.36000 REMARK 3 B22 (A**2) : -0.70000 REMARK 3 B33 (A**2) : -1.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.352 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.255 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.262 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1901 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2591 ; 2.200 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 245 ; 7.885 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;38.369 ;24.800 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 291 ;19.809 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;21.236 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 298 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1426 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 817 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1282 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 119 ; 0.214 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.251 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.225 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1249 ; 1.287 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1929 ; 2.165 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 754 ; 3.274 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 662 ; 4.601 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3OF1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000061033. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12845 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.05100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 55.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.23400 REMARK 200 R SYM FOR SHELL (I) : 0.22700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1RGS A-DOMAIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% POLYETHYLENE GLYCOL 3350, 0.1M REMARK 280 TRIS-HCL, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.21250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.52100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.21250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.52100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 171 CG CD OE1 NE2 REMARK 470 LEU A 172 CG CD1 CD2 REMARK 470 GLN A 173 CG CD OE1 NE2 REMARK 470 ARG A 174 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 180 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 ARG A 194 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 195 CG CD1 CD2 REMARK 470 VAL A 196 CG1 CG2 REMARK 470 ILE A 197 CG1 CG2 CD1 REMARK 470 ASN A 198 CG OD1 ND2 REMARK 470 LEU A 200 CG CD1 CD2 REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 SER A 204 OG REMARK 470 VAL A 205 CG1 CG2 REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 GLN A 217 CG CD OE1 NE2 REMARK 470 GLU A 225 CG CD OE1 OE2 REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 ASP A 267 CG OD1 OD2 REMARK 470 LEU A 269 CG CD1 CD2 REMARK 470 ARG A 275 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 276 CG CD1 CD2 REMARK 470 ARG A 279 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 ILE A 281 CG1 CG2 CD1 REMARK 470 LEU A 282 CG CD1 CD2 REMARK 470 LEU A 283 CG CD1 CD2 REMARK 470 SER A 286 OG REMARK 470 LYS A 288 CG CD CE NZ REMARK 470 LEU A 291 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 726 O HOH A 767 1.98 REMARK 500 O HOH A 710 O HOH A 747 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 365 CE2 TYR A 365 CD2 0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 316 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 LEU A 318 CB - CG - CD1 ANGL. DEV. = 10.4 DEGREES REMARK 500 TYR A 365 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 ARG A 399 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 LEU A 408 CB - CG - CD2 ANGL. DEV. = -11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 195 12.39 -60.63 REMARK 500 VAL A 196 -38.33 -132.42 REMARK 500 ASN A 234 51.09 29.71 REMARK 500 LYS A 237 119.02 94.48 REMARK 500 LYS A 280 -70.95 -70.71 REMARK 500 SER A 285 -40.64 -148.28 REMARK 500 LYS A 361 -152.73 -160.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RGS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TYPE IA REGULATORY SUBUNIT OF PKA REMARK 900 RELATED ID: 1CX4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TYPE IIB REGULATORY SUBUNIT OF PKA DBREF 3OF1 A 171 416 UNP P07278 KAPR_YEAST 171 416 SEQRES 1 A 246 GLN LEU GLN ARG LEU GLU LYS SER ILE ARG ASN ASN PHE SEQRES 2 A 246 LEU PHE ASN LYS LEU ASP SER ASP SER LYS ARG LEU VAL SEQRES 3 A 246 ILE ASN CYS LEU GLU GLU LYS SER VAL PRO LYS GLY ALA SEQRES 4 A 246 THR ILE ILE LYS GLN GLY ASP GLN GLY ASP TYR PHE TYR SEQRES 5 A 246 VAL VAL GLU LYS GLY THR VAL ASP PHE TYR VAL ASN ASP SEQRES 6 A 246 ASN LYS VAL ASN SER SER GLY PRO GLY SER SER PHE GLY SEQRES 7 A 246 GLU LEU ALA LEU MET TYR ASN SER PRO ARG ALA ALA THR SEQRES 8 A 246 VAL VAL ALA THR SER ASP CYS LEU LEU TRP ALA LEU ASP SEQRES 9 A 246 ARG LEU THR PHE ARG LYS ILE LEU LEU GLY SER SER PHE SEQRES 10 A 246 LYS LYS ARG LEU MET TYR ASP ASP LEU LEU LYS SER MET SEQRES 11 A 246 PRO VAL LEU LYS SER LEU THR THR TYR ASP ARG ALA LYS SEQRES 12 A 246 LEU ALA ASP ALA LEU ASP THR LYS ILE TYR GLN PRO GLY SEQRES 13 A 246 GLU THR ILE ILE ARG GLU GLY ASP GLN GLY GLU ASN PHE SEQRES 14 A 246 TYR LEU ILE GLU TYR GLY ALA VAL ASP VAL SER LYS LYS SEQRES 15 A 246 GLY GLN GLY VAL ILE ASN LYS LEU LYS ASP HIS ASP TYR SEQRES 16 A 246 PHE GLY GLU VAL ALA LEU LEU ASN ASP LEU PRO ARG GLN SEQRES 17 A 246 ALA THR VAL THR ALA THR LYS ARG THR LYS VAL ALA THR SEQRES 18 A 246 LEU GLY LYS SER GLY PHE GLN ARG LEU LEU GLY PRO ALA SEQRES 19 A 246 VAL ASP VAL LEU LYS LEU ASN ASP PRO THR ARG HIS HET CMP A 501 22 HET CMP A 601 22 HETNAM CMP ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE HETSYN CMP CYCLIC AMP; CAMP FORMUL 2 CMP 2(C10 H12 N5 O6 P) FORMUL 4 HOH *93(H2 O) HELIX 1 1 LEU A 172 ASN A 181 1 10 HELIX 2 2 ASP A 189 ASN A 198 1 10 HELIX 3 3 GLY A 248 ASN A 255 1 8 HELIX 4 4 ARG A 275 ILE A 281 1 7 HELIX 5 5 PHE A 287 TYR A 293 1 7 HELIX 6 6 TYR A 293 MET A 300 1 8 HELIX 7 7 PRO A 301 LYS A 304 5 4 HELIX 8 8 THR A 307 ALA A 317 1 11 HELIX 9 9 GLY A 367 ASP A 374 1 8 HELIX 10 10 LYS A 394 LEU A 401 1 8 HELIX 11 11 ALA A 404 ASN A 411 1 8 SHEET 1 A 4 GLU A 201 VAL A 205 0 SHEET 2 A 4 CYS A 268 ASP A 274 -1 O ALA A 272 N GLU A 201 SHEET 3 A 4 TYR A 220 LYS A 226 -1 N PHE A 221 O LEU A 273 SHEET 4 A 4 SER A 246 PHE A 247 -1 O PHE A 247 N TYR A 222 SHEET 1 B 4 THR A 210 ILE A 212 0 SHEET 2 B 4 THR A 261 ALA A 264 -1 O VAL A 262 N ILE A 211 SHEET 3 B 4 VAL A 229 TYR A 232 -1 N TYR A 232 O THR A 261 SHEET 4 B 4 ASN A 239 SER A 241 -1 O ASN A 239 N PHE A 231 SHEET 1 C 4 ASP A 319 TYR A 323 0 SHEET 2 C 4 THR A 387 GLY A 393 -1 O THR A 387 N TYR A 323 SHEET 3 C 4 ASN A 338 TYR A 344 -1 N GLU A 343 O LYS A 388 SHEET 4 C 4 TYR A 365 PHE A 366 -1 O PHE A 366 N TYR A 340 SHEET 1 D 4 THR A 328 ILE A 330 0 SHEET 2 D 4 THR A 380 ALA A 383 -1 O VAL A 381 N ILE A 329 SHEET 3 D 4 ALA A 346 LYS A 351 -1 N SER A 350 O THR A 380 SHEET 4 D 4 GLY A 355 LYS A 361 -1 O ASN A 358 N VAL A 349 SITE 1 AC1 16 ILE A 212 PHE A 231 VAL A 233 VAL A 238 SITE 2 AC1 16 ASN A 239 PHE A 247 GLY A 248 GLU A 249 SITE 3 AC1 16 LEU A 250 ALA A 251 ARG A 258 ALA A 259 SITE 4 AC1 16 ALA A 260 TYR A 309 HOH A 701 HOH A 742 SITE 1 AC2 12 ILE A 330 ILE A 357 ASN A 358 PHE A 366 SITE 2 AC2 12 GLY A 367 GLU A 368 VAL A 369 ALA A 370 SITE 3 AC2 12 ARG A 377 GLN A 378 ALA A 379 HOH A 724 CRYST1 146.425 45.042 39.103 90.00 92.51 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006829 0.000000 0.000299 0.00000 SCALE2 0.000000 0.022202 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025598 0.00000