data_3OFE # _entry.id 3OFE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3OFE RCSB RCSB061046 WWPDB D_1000061046 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3OFF Ortholog unspecified PDB 3OFG Ortholog unspecified PDB 3OFH Ortholog unspecified PDB 2I9S 'NMR solution structure of Mesd structure domain' unspecified PDB 2RQK 'NMR solution structure of Mesd' unspecified PDB 2RQM 'NMR solution structure of Mesd' unspecified # _pdbx_database_status.entry_id 3OFE _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-08-14 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Collins, M.N.' 1 'Hendrickson, W.A.' 2 # _citation.id primary _citation.title 'Structural Characterization of the Boca/Mesd Maturation Factors for LDL-Receptor-Type beta-Propeller Domains' _citation.journal_abbrev Structure _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Collins, M.N.' 1 primary 'Hendrickson, W.A.' 2 # _cell.length_a 34.106 _cell.length_b 34.106 _cell.length_c 311.238 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3OFE _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 2 2' _symmetry.entry_id 3OFE _symmetry.Int_Tables_number 91 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'LDLR chaperone boca' 10724.560 2 ? ? 'sequence database residues 88-172' ? 2 water nat water 18.015 121 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSQKH(MSE)SKKGRTL(MSE)TFVSVTGNPTREESDTITKLWQTSLWNNHIQAERY(MSE)VDDNRAIFLFKDGTQAWD AKDFLIEQERCKGVTIENKEYPG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSQKHMSKKGRTLMTFVSVTGNPTREESDTITKLWQTSLWNNHIQAERYMVDDNRAIFLFKDGTQAWDAKDFLIEQERCK GVTIENKEYPG ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLN n 1 4 LYS n 1 5 HIS n 1 6 MSE n 1 7 SER n 1 8 LYS n 1 9 LYS n 1 10 GLY n 1 11 ARG n 1 12 THR n 1 13 LEU n 1 14 MSE n 1 15 THR n 1 16 PHE n 1 17 VAL n 1 18 SER n 1 19 VAL n 1 20 THR n 1 21 GLY n 1 22 ASN n 1 23 PRO n 1 24 THR n 1 25 ARG n 1 26 GLU n 1 27 GLU n 1 28 SER n 1 29 ASP n 1 30 THR n 1 31 ILE n 1 32 THR n 1 33 LYS n 1 34 LEU n 1 35 TRP n 1 36 GLN n 1 37 THR n 1 38 SER n 1 39 LEU n 1 40 TRP n 1 41 ASN n 1 42 ASN n 1 43 HIS n 1 44 ILE n 1 45 GLN n 1 46 ALA n 1 47 GLU n 1 48 ARG n 1 49 TYR n 1 50 MSE n 1 51 VAL n 1 52 ASP n 1 53 ASP n 1 54 ASN n 1 55 ARG n 1 56 ALA n 1 57 ILE n 1 58 PHE n 1 59 LEU n 1 60 PHE n 1 61 LYS n 1 62 ASP n 1 63 GLY n 1 64 THR n 1 65 GLN n 1 66 ALA n 1 67 TRP n 1 68 ASP n 1 69 ALA n 1 70 LYS n 1 71 ASP n 1 72 PHE n 1 73 LEU n 1 74 ILE n 1 75 GLU n 1 76 GLN n 1 77 GLU n 1 78 ARG n 1 79 CYS n 1 80 LYS n 1 81 GLY n 1 82 VAL n 1 83 THR n 1 84 ILE n 1 85 GLU n 1 86 ASN n 1 87 LYS n 1 88 GLU n 1 89 TYR n 1 90 PRO n 1 91 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Fruit fly' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'boca, CG30498' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MESD_DROME _struct_ref.pdbx_db_accession Q8T9B6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SKKGRTLMTFVSVTGNPTREESDTITKLWQTSLWNNHIQAERYMVDDNRAIFLFKDGTQAWDAKDFLIEQERCKGVTIEN KEYPG ; _struct_ref.pdbx_align_begin 88 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3OFE A 7 ? 91 ? Q8T9B6 88 ? 172 ? 88 172 2 1 3OFE B 7 ? 91 ? Q8T9B6 88 ? 172 ? 88 172 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3OFE GLY A 1 ? UNP Q8T9B6 ? ? 'EXPRESSION TAG' 82 1 1 3OFE SER A 2 ? UNP Q8T9B6 ? ? 'EXPRESSION TAG' 83 2 1 3OFE GLN A 3 ? UNP Q8T9B6 ? ? 'EXPRESSION TAG' 84 3 1 3OFE LYS A 4 ? UNP Q8T9B6 ? ? 'EXPRESSION TAG' 85 4 1 3OFE HIS A 5 ? UNP Q8T9B6 ? ? 'EXPRESSION TAG' 86 5 1 3OFE MSE A 6 ? UNP Q8T9B6 ? ? 'EXPRESSION TAG' 87 6 2 3OFE GLY B 1 ? UNP Q8T9B6 ? ? 'EXPRESSION TAG' 82 7 2 3OFE SER B 2 ? UNP Q8T9B6 ? ? 'EXPRESSION TAG' 83 8 2 3OFE GLN B 3 ? UNP Q8T9B6 ? ? 'EXPRESSION TAG' 84 9 2 3OFE LYS B 4 ? UNP Q8T9B6 ? ? 'EXPRESSION TAG' 85 10 2 3OFE HIS B 5 ? UNP Q8T9B6 ? ? 'EXPRESSION TAG' 86 11 2 3OFE MSE B 6 ? UNP Q8T9B6 ? ? 'EXPRESSION TAG' 87 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3OFE _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.11 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 41.70 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details ;18-21% PEG 3350, 100-200mM Na citrate, 100mM CHES pH9.0, and 10mM DTT with macroseeding, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 315' 2005-09-14 'DCM + mirrors' 2 CCD 'ADSC QUANTUM 315' 2005-09-14 'DCM + mirrors' # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 MAD SILICON 1 M x-ray 2 'SINGLE WAVELENGTH' SILICON 1 M x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9795 1.0 2 0.9802 1.0 3 0.9645 1.0 4 0.9794 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'NSLS BEAMLINE X25' '0.9795 0.9802 0.9645' ? NSLS X25 2 SYNCHROTRON 'NSLS BEAMLINE X25' 0.9794 ? NSLS X25 # _reflns.entry_id 3OFE _reflns.d_resolution_high 2.300 _reflns.d_resolution_low 20.000 _reflns.number_obs 15757 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_netI_over_sigmaI 10.000 _reflns.pdbx_chi_squared 1.000 _reflns.pdbx_redundancy 6.500 _reflns.percent_possible_obs 99.300 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 1 _reflns.number_all 15868 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.300 2.380 ? ? ? 0.282 ? ? 0.997 6.500 ? 1526 99.300 ? 1 2.380 2.480 ? ? ? 0.227 ? ? 0.999 6.600 ? 1603 99.400 ? 2 2.480 2.590 ? ? ? 0.199 ? ? 0.997 6.500 ? 1551 99.600 ? 3 2.590 2.730 ? ? ? 0.158 ? ? 1.000 6.500 ? 1587 99.600 ? 4 2.730 2.900 ? ? ? 0.117 ? ? 1.002 6.600 ? 1587 99.600 ? 5 2.900 3.120 ? ? ? 0.086 ? ? 1.003 6.500 ? 1592 99.400 ? 6 3.120 3.430 ? ? ? 0.063 ? ? 1.003 6.500 ? 1593 99.400 ? 7 3.430 3.930 ? ? ? 0.047 ? ? 1.001 6.400 ? 1540 99.600 ? 8 3.930 4.930 ? ? ? 0.040 ? ? 1.001 6.200 ? 1607 99.600 ? 9 4.930 20.000 ? ? ? 0.035 ? ? 1.001 6.100 ? 1571 97.600 ? 10 # _refine.entry_id 3OFE _refine.ls_d_res_high 2.2880 _refine.ls_d_res_low 19.7810 _refine.pdbx_ls_sigma_F 0.080 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.9700 _refine.ls_number_reflns_obs 15471 _refine.ls_number_reflns_all 15792 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details Random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1911 _refine.ls_R_factor_R_work 0.1892 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2279 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8500 _refine.ls_number_reflns_R_free 750 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 27.3230 _refine.solvent_model_param_bsol 50.3350 _refine.solvent_model_param_ksol 0.3590 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.7694 _refine.aniso_B[2][2] 0.7694 _refine.aniso_B[3][3] -3.8839 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.2500 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 130.750 _refine.B_iso_min 9.810 _refine.occupancy_max 1.000 _refine.occupancy_min 0.370 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error 19.45 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1284 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 121 _refine_hist.number_atoms_total 1405 _refine_hist.d_res_high 2.2880 _refine_hist.d_res_low 19.7810 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 1328 0.003 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 1803 0.601 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 198 0.046 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 234 0.002 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 479 16.268 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.2880 2.4644 5 95.0000 2858 . 0.1955 0.2508 . 134 . 2992 . . 'X-RAY DIFFRACTION' 2.4644 2.7118 5 98.0000 2911 . 0.1978 0.2553 . 166 . 3077 . . 'X-RAY DIFFRACTION' 2.7118 3.1029 5 99.0000 3009 . 0.1867 0.2703 . 139 . 3148 . . 'X-RAY DIFFRACTION' 3.1029 3.9044 5 99.0000 2964 . 0.1663 0.2270 . 160 . 3124 . . 'X-RAY DIFFRACTION' 3.9044 19.7822 5 98.0000 2979 . 0.1900 0.1914 . 151 . 3130 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3OFE _struct.title 'Structured Domain of Drosophila melanogaster Boca p41 2 2 Crystal form' _struct.pdbx_descriptor 'LDLR chaperone boca' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3OFE _struct_keywords.text 'mesd, molecular chaperone, protein folding, YWTD propeller, LRP, CHAPERONE' _struct_keywords.pdbx_keywords CHAPERONE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 24 ? ASN A 41 ? THR A 105 ASN A 122 1 ? 18 HELX_P HELX_P2 2 ASP A 62 ? THR A 64 ? ASP A 143 THR A 145 5 ? 3 HELX_P HELX_P3 3 GLN A 65 ? ILE A 74 ? GLN A 146 ILE A 155 1 ? 10 HELX_P HELX_P4 4 THR B 24 ? ASN B 42 ? THR B 105 ASN B 123 1 ? 19 HELX_P HELX_P5 5 ASP B 62 ? ILE B 74 ? ASP B 143 ILE B 155 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LEU 13 C ? ? ? 1_555 A MSE 14 N ? ? A LEU 94 A MSE 95 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A MSE 14 C ? ? ? 1_555 A THR 15 N ? ? A MSE 95 A THR 96 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A TYR 49 C ? ? ? 1_555 A MSE 50 N ? ? A TYR 130 A MSE 131 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale ? ? A MSE 50 C ? ? ? 1_555 A VAL 51 N ? ? A MSE 131 A VAL 132 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale ? ? B LEU 13 C ? ? ? 1_555 B MSE 14 N A ? B LEU 94 B MSE 95 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? B LEU 13 C ? ? ? 1_555 B MSE 14 N B ? B LEU 94 B MSE 95 1_555 ? ? ? ? ? ? ? 1.328 ? covale7 covale ? ? B MSE 14 C A ? ? 1_555 B THR 15 N ? ? B MSE 95 B THR 96 1_555 ? ? ? ? ? ? ? 1.330 ? covale8 covale ? ? B MSE 14 C B ? ? 1_555 B THR 15 N ? ? B MSE 95 B THR 96 1_555 ? ? ? ? ? ? ? 1.328 ? covale9 covale ? ? B TYR 49 C ? ? ? 1_555 B MSE 50 N ? ? B TYR 130 B MSE 131 1_555 ? ? ? ? ? ? ? 1.328 ? covale10 covale ? ? B MSE 50 C ? ? ? 1_555 B VAL 51 N ? ? B MSE 131 B VAL 132 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 46 ? ASP A 52 ? ALA A 127 ASP A 133 A 2 ARG A 55 ? PHE A 60 ? ARG A 136 PHE A 141 A 3 LEU A 13 ? VAL A 19 ? LEU A 94 VAL A 100 A 4 CYS A 79 ? ILE A 84 ? CYS A 160 ILE A 165 A 5 LYS A 87 ? PRO A 90 ? LYS A 168 PRO A 171 B 1 ALA B 46 ? ASP B 52 ? ALA B 127 ASP B 133 B 2 ARG B 55 ? PHE B 60 ? ARG B 136 PHE B 141 B 3 THR B 12 ? VAL B 19 ? THR B 93 VAL B 100 B 4 CYS B 79 ? LYS B 87 ? CYS B 160 LYS B 168 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 49 ? N TYR A 130 O ILE A 57 ? O ILE A 138 A 2 3 O ALA A 56 ? O ALA A 137 N VAL A 17 ? N VAL A 98 A 3 4 N PHE A 16 ? N PHE A 97 O THR A 83 ? O THR A 164 A 4 5 N VAL A 82 ? N VAL A 163 O TYR A 89 ? O TYR A 170 B 1 2 N TYR B 49 ? N TYR B 130 O ILE B 57 ? O ILE B 138 B 2 3 O PHE B 58 ? O PHE B 139 N THR B 15 ? N THR B 96 B 3 4 N MSE B 14 ? N MSE B 95 O GLU B 85 ? O GLU B 166 # _atom_sites.entry_id 3OFE _atom_sites.fract_transf_matrix[1][1] 0.029320 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029320 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003213 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 82 ? ? ? A . n A 1 2 SER 2 83 ? ? ? A . n A 1 3 GLN 3 84 ? ? ? A . n A 1 4 LYS 4 85 ? ? ? A . n A 1 5 HIS 5 86 ? ? ? A . n A 1 6 MSE 6 87 ? ? ? A . n A 1 7 SER 7 88 ? ? ? A . n A 1 8 LYS 8 89 ? ? ? A . n A 1 9 LYS 9 90 ? ? ? A . n A 1 10 GLY 10 91 ? ? ? A . n A 1 11 ARG 11 92 92 ARG ARG A . n A 1 12 THR 12 93 93 THR THR A . n A 1 13 LEU 13 94 94 LEU LEU A . n A 1 14 MSE 14 95 95 MSE MSE A . n A 1 15 THR 15 96 96 THR THR A . n A 1 16 PHE 16 97 97 PHE PHE A . n A 1 17 VAL 17 98 98 VAL VAL A . n A 1 18 SER 18 99 99 SER SER A . n A 1 19 VAL 19 100 100 VAL VAL A . n A 1 20 THR 20 101 101 THR THR A . n A 1 21 GLY 21 102 102 GLY GLY A . n A 1 22 ASN 22 103 103 ASN ASN A . n A 1 23 PRO 23 104 104 PRO PRO A . n A 1 24 THR 24 105 105 THR THR A . n A 1 25 ARG 25 106 106 ARG ARG A . n A 1 26 GLU 26 107 107 GLU GLU A . n A 1 27 GLU 27 108 108 GLU GLU A . n A 1 28 SER 28 109 109 SER SER A . n A 1 29 ASP 29 110 110 ASP ASP A . n A 1 30 THR 30 111 111 THR THR A . n A 1 31 ILE 31 112 112 ILE ILE A . n A 1 32 THR 32 113 113 THR THR A . n A 1 33 LYS 33 114 114 LYS LYS A . n A 1 34 LEU 34 115 115 LEU LEU A . n A 1 35 TRP 35 116 116 TRP TRP A . n A 1 36 GLN 36 117 117 GLN GLN A . n A 1 37 THR 37 118 118 THR THR A . n A 1 38 SER 38 119 119 SER SER A . n A 1 39 LEU 39 120 120 LEU LEU A . n A 1 40 TRP 40 121 121 TRP TRP A . n A 1 41 ASN 41 122 122 ASN ASN A . n A 1 42 ASN 42 123 123 ASN ASN A . n A 1 43 HIS 43 124 124 HIS HIS A . n A 1 44 ILE 44 125 125 ILE ILE A . n A 1 45 GLN 45 126 126 GLN GLN A . n A 1 46 ALA 46 127 127 ALA ALA A . n A 1 47 GLU 47 128 128 GLU GLU A . n A 1 48 ARG 48 129 129 ARG ARG A . n A 1 49 TYR 49 130 130 TYR TYR A . n A 1 50 MSE 50 131 131 MSE MSE A . n A 1 51 VAL 51 132 132 VAL VAL A . n A 1 52 ASP 52 133 133 ASP ASP A . n A 1 53 ASP 53 134 134 ASP ASP A . n A 1 54 ASN 54 135 135 ASN ASN A . n A 1 55 ARG 55 136 136 ARG ARG A . n A 1 56 ALA 56 137 137 ALA ALA A . n A 1 57 ILE 57 138 138 ILE ILE A . n A 1 58 PHE 58 139 139 PHE PHE A . n A 1 59 LEU 59 140 140 LEU LEU A . n A 1 60 PHE 60 141 141 PHE PHE A . n A 1 61 LYS 61 142 142 LYS LYS A . n A 1 62 ASP 62 143 143 ASP ASP A . n A 1 63 GLY 63 144 144 GLY GLY A . n A 1 64 THR 64 145 145 THR THR A . n A 1 65 GLN 65 146 146 GLN GLN A . n A 1 66 ALA 66 147 147 ALA ALA A . n A 1 67 TRP 67 148 148 TRP TRP A . n A 1 68 ASP 68 149 149 ASP ASP A . n A 1 69 ALA 69 150 150 ALA ALA A . n A 1 70 LYS 70 151 151 LYS LYS A . n A 1 71 ASP 71 152 152 ASP ASP A . n A 1 72 PHE 72 153 153 PHE PHE A . n A 1 73 LEU 73 154 154 LEU LEU A . n A 1 74 ILE 74 155 155 ILE ILE A . n A 1 75 GLU 75 156 156 GLU GLU A . n A 1 76 GLN 76 157 157 GLN GLN A . n A 1 77 GLU 77 158 158 GLU GLU A . n A 1 78 ARG 78 159 159 ARG ARG A . n A 1 79 CYS 79 160 160 CYS CYS A . n A 1 80 LYS 80 161 161 LYS LYS A . n A 1 81 GLY 81 162 162 GLY GLY A . n A 1 82 VAL 82 163 163 VAL VAL A . n A 1 83 THR 83 164 164 THR THR A . n A 1 84 ILE 84 165 165 ILE ILE A . n A 1 85 GLU 85 166 166 GLU GLU A . n A 1 86 ASN 86 167 167 ASN ASN A . n A 1 87 LYS 87 168 168 LYS LYS A . n A 1 88 GLU 88 169 169 GLU GLU A . n A 1 89 TYR 89 170 170 TYR TYR A . n A 1 90 PRO 90 171 171 PRO PRO A . n A 1 91 GLY 91 172 172 GLY GLY A . n B 1 1 GLY 1 82 ? ? ? B . n B 1 2 SER 2 83 ? ? ? B . n B 1 3 GLN 3 84 ? ? ? B . n B 1 4 LYS 4 85 ? ? ? B . n B 1 5 HIS 5 86 ? ? ? B . n B 1 6 MSE 6 87 ? ? ? B . n B 1 7 SER 7 88 ? ? ? B . n B 1 8 LYS 8 89 ? ? ? B . n B 1 9 LYS 9 90 ? ? ? B . n B 1 10 GLY 10 91 ? ? ? B . n B 1 11 ARG 11 92 92 ARG ARG B . n B 1 12 THR 12 93 93 THR THR B . n B 1 13 LEU 13 94 94 LEU LEU B . n B 1 14 MSE 14 95 95 MSE MSE B . n B 1 15 THR 15 96 96 THR THR B . n B 1 16 PHE 16 97 97 PHE PHE B . n B 1 17 VAL 17 98 98 VAL VAL B . n B 1 18 SER 18 99 99 SER SER B . n B 1 19 VAL 19 100 100 VAL VAL B . n B 1 20 THR 20 101 101 THR THR B . n B 1 21 GLY 21 102 102 GLY GLY B . n B 1 22 ASN 22 103 103 ASN ASN B . n B 1 23 PRO 23 104 104 PRO PRO B . n B 1 24 THR 24 105 105 THR THR B . n B 1 25 ARG 25 106 106 ARG ARG B . n B 1 26 GLU 26 107 107 GLU GLU B . n B 1 27 GLU 27 108 108 GLU GLU B . n B 1 28 SER 28 109 109 SER SER B . n B 1 29 ASP 29 110 110 ASP ASP B . n B 1 30 THR 30 111 111 THR THR B . n B 1 31 ILE 31 112 112 ILE ILE B . n B 1 32 THR 32 113 113 THR THR B . n B 1 33 LYS 33 114 114 LYS LYS B . n B 1 34 LEU 34 115 115 LEU LEU B . n B 1 35 TRP 35 116 116 TRP TRP B . n B 1 36 GLN 36 117 117 GLN GLN B . n B 1 37 THR 37 118 118 THR THR B . n B 1 38 SER 38 119 119 SER SER B . n B 1 39 LEU 39 120 120 LEU LEU B . n B 1 40 TRP 40 121 121 TRP TRP B . n B 1 41 ASN 41 122 122 ASN ASN B . n B 1 42 ASN 42 123 123 ASN ASN B . n B 1 43 HIS 43 124 124 HIS HIS B . n B 1 44 ILE 44 125 125 ILE ILE B . n B 1 45 GLN 45 126 126 GLN GLN B . n B 1 46 ALA 46 127 127 ALA ALA B . n B 1 47 GLU 47 128 128 GLU GLU B . n B 1 48 ARG 48 129 129 ARG ARG B . n B 1 49 TYR 49 130 130 TYR TYR B . n B 1 50 MSE 50 131 131 MSE MSE B . n B 1 51 VAL 51 132 132 VAL VAL B . n B 1 52 ASP 52 133 133 ASP ASP B . n B 1 53 ASP 53 134 134 ASP ASP B . n B 1 54 ASN 54 135 135 ASN ASN B . n B 1 55 ARG 55 136 136 ARG ARG B . n B 1 56 ALA 56 137 137 ALA ALA B . n B 1 57 ILE 57 138 138 ILE ILE B . n B 1 58 PHE 58 139 139 PHE PHE B . n B 1 59 LEU 59 140 140 LEU LEU B . n B 1 60 PHE 60 141 141 PHE PHE B . n B 1 61 LYS 61 142 142 LYS LYS B . n B 1 62 ASP 62 143 143 ASP ASP B . n B 1 63 GLY 63 144 144 GLY GLY B . n B 1 64 THR 64 145 145 THR THR B . n B 1 65 GLN 65 146 146 GLN GLN B . n B 1 66 ALA 66 147 147 ALA ALA B . n B 1 67 TRP 67 148 148 TRP TRP B . n B 1 68 ASP 68 149 149 ASP ASP B . n B 1 69 ALA 69 150 150 ALA ALA B . n B 1 70 LYS 70 151 151 LYS LYS B . n B 1 71 ASP 71 152 152 ASP ASP B . n B 1 72 PHE 72 153 153 PHE PHE B . n B 1 73 LEU 73 154 154 LEU LEU B . n B 1 74 ILE 74 155 155 ILE ILE B . n B 1 75 GLU 75 156 156 GLU GLU B . n B 1 76 GLN 76 157 157 GLN GLN B . n B 1 77 GLU 77 158 158 GLU GLU B . n B 1 78 ARG 78 159 159 ARG ARG B . n B 1 79 CYS 79 160 160 CYS CYS B . n B 1 80 LYS 80 161 161 LYS LYS B . n B 1 81 GLY 81 162 162 GLY GLY B . n B 1 82 VAL 82 163 163 VAL VAL B . n B 1 83 THR 83 164 164 THR THR B . n B 1 84 ILE 84 165 165 ILE ILE B . n B 1 85 GLU 85 166 166 GLU GLU B . n B 1 86 ASN 86 167 167 ASN ASN B . n B 1 87 LYS 87 168 168 LYS LYS B . n B 1 88 GLU 88 169 169 GLU GLU B . n B 1 89 TYR 89 170 ? ? ? B . n B 1 90 PRO 90 171 ? ? ? B . n B 1 91 GLY 91 172 ? ? ? B . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 14 A MSE 95 ? MET SELENOMETHIONINE 2 A MSE 50 A MSE 131 ? MET SELENOMETHIONINE 3 B MSE 14 B MSE 95 ? MET SELENOMETHIONINE 4 B MSE 50 B MSE 131 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 44 ? C HOH . 2 1 A HOH 57 ? C HOH . 3 1 A HOH 183 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-03-02 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.500 _diffrn_reflns.pdbx_d_res_low 20.000 _diffrn_reflns.pdbx_number_obs 10635 _diffrn_reflns.pdbx_Rmerge_I_obs 0.067 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.00 _diffrn_reflns.av_sigmaI_over_netI 27.96 _diffrn_reflns.pdbx_redundancy 14.60 _diffrn_reflns.pdbx_percent_possible_obs 85.80 _diffrn_reflns.number 155098 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 5.35 20.00 ? ? 0.038 ? 1.004 13.90 95.40 1 4.26 5.35 ? ? 0.039 ? 1.004 14.90 98.70 1 3.73 4.26 ? ? 0.045 ? 0.999 15.20 99.20 1 3.39 3.73 ? ? 0.061 ? 0.998 15.40 99.20 1 3.15 3.39 ? ? 0.087 ? 0.999 15.50 98.90 1 2.96 3.15 ? ? 0.119 ? 1.003 15.30 99.00 1 2.81 2.96 ? ? 0.157 ? 1.004 15.10 89.00 1 2.69 2.81 ? ? 0.172 ? 1.005 13.30 71.70 1 2.59 2.69 ? ? 0.231 ? 1.004 12.60 59.20 1 2.50 2.59 ? ? 0.282 ? 1.002 12.40 47.30 # _pdbx_phasing_dm.entry_id 3OFE _pdbx_phasing_dm.fom_acentric 0.790 _pdbx_phasing_dm.fom_centric 0.760 _pdbx_phasing_dm.fom 0.780 _pdbx_phasing_dm.reflns_acentric 3414 _pdbx_phasing_dm.reflns_centric 1695 _pdbx_phasing_dm.reflns 5109 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 8.000 19.781 ? ? 0.950 0.870 0.900 88 170 258 5.000 8.000 ? ? 0.920 0.860 0.890 408 326 734 4.000 5.000 ? ? 0.920 0.830 0.890 559 318 877 3.500 4.000 ? ? 0.870 0.810 0.850 599 262 861 3.000 3.500 ? ? 0.750 0.660 0.730 1081 412 1493 2.800 3.000 ? ? 0.590 0.530 0.570 679 207 886 # _phasing.method MAD # _phasing_MAD_clust.expt_id 1 _phasing_MAD_clust.id '3 wavelength' _phasing_MAD_clust.number_set ? # _phasing_MAD_expt.id 1 _phasing_MAD_expt.mean_fom ? # loop_ _phasing_MAD_set.expt_id _phasing_MAD_set.clust_id _phasing_MAD_set.set_id _phasing_MAD_set.wavelength _phasing_MAD_set.pdbx_f_prime_refined _phasing_MAD_set.pdbx_f_double_prime_refined 1 '3 wavelength' 1 0.9795 -8.16 6.71 1 '3 wavelength' 2 0.9802 -11.68 3.04 1 '3 wavelength' 3 0.9645 -4.36 5.26 # loop_ _phasing_set.id _phasing_set.pdbx_d_res_high _phasing_set.pdbx_d_res_low 1 . . 2 . . 3 . . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 SOLVE 2.08 14-Sept-2004 program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 RESOLVE 2.08 14-Sept-2004 program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing http://www.solve.lanl.gov/ ? ? 5 PHENIX ? ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 6 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 7 CBASS . ? ? ? ? 'data collection' ? ? ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 159 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 88.43 _pdbx_validate_torsion.psi 1.44 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 107 ? CD ? A GLU 26 CD 2 1 Y 1 A GLU 107 ? OE1 ? A GLU 26 OE1 3 1 Y 1 A GLU 107 ? OE2 ? A GLU 26 OE2 4 1 Y 1 A LYS 142 ? CG ? A LYS 61 CG 5 1 Y 1 A LYS 142 ? CD ? A LYS 61 CD 6 1 Y 1 A LYS 142 ? CE ? A LYS 61 CE 7 1 Y 1 A LYS 142 ? NZ ? A LYS 61 NZ 8 1 Y 1 A LYS 168 ? CG ? A LYS 87 CG 9 1 Y 1 A LYS 168 ? CD ? A LYS 87 CD 10 1 Y 1 A LYS 168 ? CE ? A LYS 87 CE 11 1 Y 1 A LYS 168 ? NZ ? A LYS 87 NZ 12 1 Y 1 B LYS 114 ? CD ? B LYS 33 CD 13 1 Y 1 B LYS 114 ? CE ? B LYS 33 CE 14 1 Y 1 B LYS 114 ? NZ ? B LYS 33 NZ 15 1 Y 1 B LYS 142 ? CB ? B LYS 61 CB 16 1 Y 1 B LYS 142 ? CG ? B LYS 61 CG 17 1 Y 1 B LYS 142 ? CD ? B LYS 61 CD 18 1 Y 1 B LYS 142 ? CE ? B LYS 61 CE 19 1 Y 1 B LYS 142 ? NZ ? B LYS 61 NZ 20 1 Y 1 B GLU 156 ? CD ? B GLU 75 CD 21 1 Y 1 B GLU 156 ? OE1 ? B GLU 75 OE1 22 1 Y 1 B GLU 156 ? OE2 ? B GLU 75 OE2 23 1 Y 1 B GLU 158 ? CD ? B GLU 77 CD 24 1 Y 1 B GLU 158 ? OE1 ? B GLU 77 OE1 25 1 Y 1 B GLU 158 ? OE2 ? B GLU 77 OE2 26 1 Y 1 B GLU 169 ? CB ? B GLU 88 CB 27 1 Y 1 B GLU 169 ? CG ? B GLU 88 CG 28 1 Y 1 B GLU 169 ? CD ? B GLU 88 CD 29 1 Y 1 B GLU 169 ? OE1 ? B GLU 88 OE1 30 1 Y 1 B GLU 169 ? OE2 ? B GLU 88 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 82 ? A GLY 1 2 1 Y 1 A SER 83 ? A SER 2 3 1 Y 1 A GLN 84 ? A GLN 3 4 1 Y 1 A LYS 85 ? A LYS 4 5 1 Y 1 A HIS 86 ? A HIS 5 6 1 Y 1 A MSE 87 ? A MSE 6 7 1 Y 1 A SER 88 ? A SER 7 8 1 Y 1 A LYS 89 ? A LYS 8 9 1 Y 1 A LYS 90 ? A LYS 9 10 1 Y 1 A GLY 91 ? A GLY 10 11 1 Y 1 B GLY 82 ? B GLY 1 12 1 Y 1 B SER 83 ? B SER 2 13 1 Y 1 B GLN 84 ? B GLN 3 14 1 Y 1 B LYS 85 ? B LYS 4 15 1 Y 1 B HIS 86 ? B HIS 5 16 1 Y 1 B MSE 87 ? B MSE 6 17 1 Y 1 B SER 88 ? B SER 7 18 1 Y 1 B LYS 89 ? B LYS 8 19 1 Y 1 B LYS 90 ? B LYS 9 20 1 Y 1 B GLY 91 ? B GLY 10 21 1 Y 1 B TYR 170 ? B TYR 89 22 1 Y 1 B PRO 171 ? B PRO 90 23 1 Y 1 B GLY 172 ? B GLY 91 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 1 1 HOH HOH A . C 2 HOH 2 3 3 HOH HOH A . C 2 HOH 3 7 7 HOH HOH A . C 2 HOH 4 9 9 HOH HOH A . C 2 HOH 5 11 11 HOH HOH A . C 2 HOH 6 12 12 HOH HOH A . C 2 HOH 7 13 13 HOH HOH A . C 2 HOH 8 14 14 HOH HOH A . C 2 HOH 9 15 15 HOH HOH A . C 2 HOH 10 17 17 HOH HOH A . C 2 HOH 11 22 22 HOH HOH A . C 2 HOH 12 23 23 HOH HOH A . C 2 HOH 13 33 33 HOH HOH A . C 2 HOH 14 36 36 HOH HOH A . C 2 HOH 15 39 39 HOH HOH A . C 2 HOH 16 40 40 HOH HOH A . C 2 HOH 17 41 41 HOH HOH A . C 2 HOH 18 42 42 HOH HOH A . C 2 HOH 19 43 43 HOH HOH A . C 2 HOH 20 44 44 HOH HOH A . C 2 HOH 21 49 49 HOH HOH A . C 2 HOH 22 53 53 HOH HOH A . C 2 HOH 23 55 55 HOH HOH A . C 2 HOH 24 57 57 HOH HOH A . C 2 HOH 25 60 60 HOH HOH A . C 2 HOH 26 61 61 HOH HOH A . C 2 HOH 27 63 63 HOH HOH A . C 2 HOH 28 64 64 HOH HOH A . C 2 HOH 29 68 68 HOH HOH A . C 2 HOH 30 73 73 HOH HOH A . C 2 HOH 31 79 79 HOH HOH A . C 2 HOH 32 80 80 HOH HOH A . C 2 HOH 33 81 81 HOH HOH A . C 2 HOH 34 173 83 HOH HOH A . C 2 HOH 35 174 89 HOH HOH A . C 2 HOH 36 175 90 HOH HOH A . C 2 HOH 37 176 99 HOH HOH A . C 2 HOH 38 177 102 HOH HOH A . C 2 HOH 39 178 103 HOH HOH A . C 2 HOH 40 179 104 HOH HOH A . C 2 HOH 41 180 110 HOH HOH A . C 2 HOH 42 181 115 HOH HOH A . C 2 HOH 43 182 129 HOH HOH A . C 2 HOH 44 183 133 HOH HOH A . C 2 HOH 45 184 135 HOH HOH A . C 2 HOH 46 185 139 HOH HOH A . C 2 HOH 47 186 140 HOH HOH A . C 2 HOH 48 187 141 HOH HOH A . C 2 HOH 49 188 142 HOH HOH A . C 2 HOH 50 189 143 HOH HOH A . C 2 HOH 51 190 144 HOH HOH A . C 2 HOH 52 191 145 HOH HOH A . C 2 HOH 53 192 146 HOH HOH A . C 2 HOH 54 193 153 HOH HOH A . C 2 HOH 55 194 109 HOH HOH A . D 2 HOH 1 2 2 HOH HOH B . D 2 HOH 2 4 4 HOH HOH B . D 2 HOH 3 5 5 HOH HOH B . D 2 HOH 4 6 6 HOH HOH B . D 2 HOH 5 8 8 HOH HOH B . D 2 HOH 6 10 10 HOH HOH B . D 2 HOH 7 16 16 HOH HOH B . D 2 HOH 8 18 18 HOH HOH B . D 2 HOH 9 19 19 HOH HOH B . D 2 HOH 10 20 20 HOH HOH B . D 2 HOH 11 21 21 HOH HOH B . D 2 HOH 12 24 24 HOH HOH B . D 2 HOH 13 25 25 HOH HOH B . D 2 HOH 14 26 26 HOH HOH B . D 2 HOH 15 27 27 HOH HOH B . D 2 HOH 16 28 28 HOH HOH B . D 2 HOH 17 29 29 HOH HOH B . D 2 HOH 18 30 30 HOH HOH B . D 2 HOH 19 31 31 HOH HOH B . D 2 HOH 20 32 32 HOH HOH B . D 2 HOH 21 34 34 HOH HOH B . D 2 HOH 22 37 37 HOH HOH B . D 2 HOH 23 38 38 HOH HOH B . D 2 HOH 24 45 45 HOH HOH B . D 2 HOH 25 46 46 HOH HOH B . D 2 HOH 26 47 47 HOH HOH B . D 2 HOH 27 52 52 HOH HOH B . D 2 HOH 28 54 54 HOH HOH B . D 2 HOH 29 56 56 HOH HOH B . D 2 HOH 30 58 58 HOH HOH B . D 2 HOH 31 59 59 HOH HOH B . D 2 HOH 32 62 62 HOH HOH B . D 2 HOH 33 65 65 HOH HOH B . D 2 HOH 34 66 66 HOH HOH B . D 2 HOH 35 67 67 HOH HOH B . D 2 HOH 36 69 69 HOH HOH B . D 2 HOH 37 71 71 HOH HOH B . D 2 HOH 38 75 75 HOH HOH B . D 2 HOH 39 76 76 HOH HOH B . D 2 HOH 40 173 84 HOH HOH B . D 2 HOH 41 174 85 HOH HOH B . D 2 HOH 42 175 91 HOH HOH B . D 2 HOH 43 176 92 HOH HOH B . D 2 HOH 44 177 93 HOH HOH B . D 2 HOH 45 178 95 HOH HOH B . D 2 HOH 46 179 96 HOH HOH B . D 2 HOH 47 180 97 HOH HOH B . D 2 HOH 48 181 105 HOH HOH B . D 2 HOH 49 182 106 HOH HOH B . D 2 HOH 50 183 107 HOH HOH B . D 2 HOH 51 185 111 HOH HOH B . D 2 HOH 52 186 112 HOH HOH B . D 2 HOH 53 187 113 HOH HOH B . D 2 HOH 54 188 118 HOH HOH B . D 2 HOH 55 189 119 HOH HOH B . D 2 HOH 56 190 120 HOH HOH B . D 2 HOH 57 191 121 HOH HOH B . D 2 HOH 58 192 122 HOH HOH B . D 2 HOH 59 193 130 HOH HOH B . D 2 HOH 60 194 131 HOH HOH B . D 2 HOH 61 195 136 HOH HOH B . D 2 HOH 62 196 137 HOH HOH B . D 2 HOH 63 197 149 HOH HOH B . D 2 HOH 64 198 150 HOH HOH B . D 2 HOH 65 199 151 HOH HOH B . D 2 HOH 66 200 152 HOH HOH B . #