HEADER HYDROLASE 16-AUG-10 3OG9 TITLE STRUCTURE OF YAHD WITH MALIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN YAHD A COPPER INDUCIBLE HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. LACTIS; SOURCE 3 ORGANISM_COMMON: STREPTOCOCCUS LACTIS; SOURCE 4 ORGANISM_TAXID: 272623; SOURCE 5 STRAIN: IL1403; SOURCE 6 GENE: YAHD, LL0076, L795, L79507; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/BETA HYDROLASE, COPPER HOMEOSTASIS, MALIC ACID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.MARTINEZ FONT,S.MANCINI,E.TAUBERGER,S.MONIOT REVDAT 3 06-SEP-23 3OG9 1 REMARK SEQADV REVDAT 2 19-JUN-13 3OG9 1 JRNL VERSN REVDAT 1 15-DEC-10 3OG9 0 JRNL AUTH J.MARTINEZ,S.MANCINI,E.TAUBERGER,C.WEISE,W.SAENGER,M.SOLIOZ JRNL TITL REGULATION AND STRUCTURE OF YAHD, A COPPER INDUCIBLE JRNL TITL 2 ALPHA/BETA HYDROLASE OF LACTOCOCCUS LACTIS IL1403 JRNL REF FEMS MICROBIOL.LETT. V. 314 57 2011 JRNL REFN ISSN 0378-1097 JRNL PMID 21059179 JRNL DOI 10.1111/J.1574-6968.2010.02144.X REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0040 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1749 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2410 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3275 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 487 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : 0.47000 REMARK 3 B33 (A**2) : -0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.158 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3480 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4721 ; 1.458 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 441 ; 7.321 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;37.733 ;25.647 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 625 ;13.362 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ; 7.940 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 519 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2672 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1628 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2400 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 441 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 61 ; 0.178 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 62 ; 0.242 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2208 ; 1.043 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3440 ; 1.538 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1436 ; 2.513 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1281 ; 3.841 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3OG9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000061077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34965 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 0.1590 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.69100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB CODE 2HLI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 37.5% PEG 3350, 150MM DL-MALIC ACID PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.32000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.01500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.53500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.01500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.32000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.53500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 ALA B -2 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET B 1 CG SD CE REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 158 CB CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 486 O HOH A 487 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 403 O HOH B 488 1655 1.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 186 CA - CB - CG ANGL. DEV. = -14.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 -8.87 81.74 REMARK 500 ASN A 50 52.47 -143.43 REMARK 500 THR A 67 -94.10 -97.28 REMARK 500 SER A 107 -119.86 55.11 REMARK 500 SER B 39 -1.84 73.65 REMARK 500 ASN B 50 44.87 -146.34 REMARK 500 THR B 67 -87.36 -99.14 REMARK 500 SER B 107 -123.96 54.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 61 GLY A 62 -99.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLT A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLT B 500 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT THE UNP ENTRY Q9CJC1 SHOULD HAVE RESIDUES REMARK 999 191T AND 199K DBREF 3OG9 A 1 206 UNP Q9CJC1 Q9CJC1_LACLA 1 206 DBREF 3OG9 B 1 206 UNP Q9CJC1 Q9CJC1_LACLA 1 206 SEQADV 3OG9 ALA A -2 UNP Q9CJC1 EXPRESSION TAG SEQADV 3OG9 GLY A -1 UNP Q9CJC1 EXPRESSION TAG SEQADV 3OG9 HIS A 0 UNP Q9CJC1 EXPRESSION TAG SEQADV 3OG9 THR A 191 UNP Q9CJC1 MET 191 SEE REMARK 999 SEQADV 3OG9 LYS A 199 UNP Q9CJC1 ASN 199 SEE REMARK 999 SEQADV 3OG9 ALA B -2 UNP Q9CJC1 EXPRESSION TAG SEQADV 3OG9 GLY B -1 UNP Q9CJC1 EXPRESSION TAG SEQADV 3OG9 HIS B 0 UNP Q9CJC1 EXPRESSION TAG SEQADV 3OG9 THR B 191 UNP Q9CJC1 MET 191 SEE REMARK 999 SEQADV 3OG9 LYS B 199 UNP Q9CJC1 ASN 199 SEE REMARK 999 SEQRES 1 A 209 ALA GLY HIS MET THR ASP TYR VAL PHE LYS ALA GLY ARG SEQRES 2 A 209 LYS ASP LEU ALA PRO LEU LEU LEU LEU HIS SER THR GLY SEQRES 3 A 209 GLY ASP GLU HIS GLN LEU VAL GLU ILE ALA GLU MET ILE SEQRES 4 A 209 ALA PRO SER HIS PRO ILE LEU SER ILE ARG GLY ARG ILE SEQRES 5 A 209 ASN GLU GLN GLY VAL ASN ARG TYR PHE LYS LEU ARG GLY SEQRES 6 A 209 LEU GLY GLY PHE THR LYS GLU ASN PHE ASP LEU GLU SER SEQRES 7 A 209 LEU ASP GLU GLU THR ASP TRP LEU THR ASP GLU VAL SER SEQRES 8 A 209 LEU LEU ALA GLU LYS HIS ASP LEU ASP VAL HIS LYS MET SEQRES 9 A 209 ILE ALA ILE GLY TYR SER ASN GLY ALA ASN VAL ALA LEU SEQRES 10 A 209 ASN MET PHE LEU ARG GLY LYS ILE ASN PHE ASP LYS ILE SEQRES 11 A 209 ILE ALA PHE HIS GLY MET GLN LEU GLU ASP PHE GLU GLN SEQRES 12 A 209 THR VAL GLN LEU ASP ASP LYS HIS VAL PHE LEU SER TYR SEQRES 13 A 209 ALA PRO ASN ASP MET ILE VAL PRO GLN LYS ASN PHE GLY SEQRES 14 A 209 ASP LEU LYS GLY ASP LEU GLU ASP SER GLY CYS GLN LEU SEQRES 15 A 209 GLU ILE TYR GLU SER SER LEU GLY HIS GLN LEU THR GLN SEQRES 16 A 209 GLU GLU VAL LEU ALA ALA LYS LYS TRP LEU THR GLU THR SEQRES 17 A 209 LYS SEQRES 1 B 209 ALA GLY HIS MET THR ASP TYR VAL PHE LYS ALA GLY ARG SEQRES 2 B 209 LYS ASP LEU ALA PRO LEU LEU LEU LEU HIS SER THR GLY SEQRES 3 B 209 GLY ASP GLU HIS GLN LEU VAL GLU ILE ALA GLU MET ILE SEQRES 4 B 209 ALA PRO SER HIS PRO ILE LEU SER ILE ARG GLY ARG ILE SEQRES 5 B 209 ASN GLU GLN GLY VAL ASN ARG TYR PHE LYS LEU ARG GLY SEQRES 6 B 209 LEU GLY GLY PHE THR LYS GLU ASN PHE ASP LEU GLU SER SEQRES 7 B 209 LEU ASP GLU GLU THR ASP TRP LEU THR ASP GLU VAL SER SEQRES 8 B 209 LEU LEU ALA GLU LYS HIS ASP LEU ASP VAL HIS LYS MET SEQRES 9 B 209 ILE ALA ILE GLY TYR SER ASN GLY ALA ASN VAL ALA LEU SEQRES 10 B 209 ASN MET PHE LEU ARG GLY LYS ILE ASN PHE ASP LYS ILE SEQRES 11 B 209 ILE ALA PHE HIS GLY MET GLN LEU GLU ASP PHE GLU GLN SEQRES 12 B 209 THR VAL GLN LEU ASP ASP LYS HIS VAL PHE LEU SER TYR SEQRES 13 B 209 ALA PRO ASN ASP MET ILE VAL PRO GLN LYS ASN PHE GLY SEQRES 14 B 209 ASP LEU LYS GLY ASP LEU GLU ASP SER GLY CYS GLN LEU SEQRES 15 B 209 GLU ILE TYR GLU SER SER LEU GLY HIS GLN LEU THR GLN SEQRES 16 B 209 GLU GLU VAL LEU ALA ALA LYS LYS TRP LEU THR GLU THR SEQRES 17 B 209 LYS HET MLT A 500 9 HET MLT B 500 9 HETNAM MLT D-MALATE HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID FORMUL 3 MLT 2(C4 H6 O5) FORMUL 5 HOH *487(H2 O) HELIX 1 1 LEU A 29 ALA A 37 1 9 HELIX 2 2 ASN A 50 VAL A 54 5 5 HELIX 3 3 THR A 67 PHE A 71 5 5 HELIX 4 4 ASP A 72 ASP A 95 1 24 HELIX 5 5 ASP A 97 LYS A 100 5 4 HELIX 6 6 SER A 107 ARG A 119 1 13 HELIX 7 7 PRO A 161 SER A 175 1 15 HELIX 8 8 THR A 191 LYS A 206 1 16 HELIX 9 9 LEU B 29 ALA B 37 1 9 HELIX 10 10 ASN B 50 VAL B 54 5 5 HELIX 11 11 THR B 67 PHE B 71 5 5 HELIX 12 12 ASP B 72 HIS B 94 1 23 HELIX 13 13 ASP B 97 LYS B 100 5 4 HELIX 14 14 SER B 107 ARG B 119 1 13 HELIX 15 15 PRO B 161 SER B 175 1 15 HELIX 16 16 THR B 191 THR B 205 1 15 SHEET 1 A 7 TYR A 4 LYS A 7 0 SHEET 2 A 7 ILE A 42 ILE A 45 -1 O SER A 44 N VAL A 5 SHEET 3 A 7 LEU A 16 LEU A 19 1 N LEU A 16 O LEU A 43 SHEET 4 A 7 ILE A 102 TYR A 106 1 O ILE A 104 N LEU A 17 SHEET 5 A 7 LYS A 126 PHE A 130 1 O ILE A 128 N ALA A 103 SHEET 6 A 7 HIS A 148 TYR A 153 1 O PHE A 150 N ALA A 129 SHEET 7 A 7 GLN A 178 GLU A 183 1 O TYR A 182 N LEU A 151 SHEET 1 B 7 TYR B 4 LYS B 7 0 SHEET 2 B 7 ILE B 42 ILE B 45 -1 O ILE B 42 N LYS B 7 SHEET 3 B 7 LEU B 16 LEU B 19 1 N LEU B 18 O LEU B 43 SHEET 4 B 7 ILE B 102 TYR B 106 1 O ILE B 104 N LEU B 17 SHEET 5 B 7 LYS B 126 PHE B 130 1 O ILE B 128 N ALA B 103 SHEET 6 B 7 HIS B 148 TYR B 153 1 O PHE B 150 N ALA B 129 SHEET 7 B 7 GLN B 178 GLU B 183 1 O TYR B 182 N LEU B 151 SITE 1 AC1 9 THR A 22 ARG A 56 PHE A 71 SER A 107 SITE 2 AC1 9 ASN A 108 ASN A 111 HIS A 188 HOH A 319 SITE 3 AC1 9 HOH A 348 SITE 1 AC2 9 THR B 22 ARG B 56 PHE B 71 SER B 107 SITE 2 AC2 9 ASN B 108 ASN B 111 HIS B 188 HOH B 358 SITE 3 AC2 9 HOH B 396 CRYST1 40.640 79.070 130.030 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024606 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007691 0.00000