HEADER HYDROLASE 16-AUG-10 3OGA TITLE 1.75 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF A PUTATIVE NTP TITLE 2 PYROPHOSPHOHYDROLASE (YFAO) FROM SALMONELLA TYPHIMURIUM LT2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSIDE TRIPHOSPHATASE NUDI; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.6.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 99287; SOURCE 5 STRAIN: LT2; SOURCE 6 GENE: NUDI, STM2295, YFAO; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)/MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMSCG7 KEYWDS SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM STR. LT2, KEYWDS 2 UNKNOWN FUNCTION, PUTATIVE NTP PYROPHOSPHOHYDROLASE, INFECTIOUS KEYWDS 3 DISEASES, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 4 INFECTIOUS DISEASES (CSGID), HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.S.HALAVATY,G.MINASOV,L.SHUVALOVA,J.WINSOR,I.DUBROVSKA,S.PETERSON, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 3 06-SEP-23 3OGA 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3OGA 1 REMARK REVDAT 1 06-OCT-10 3OGA 0 JRNL AUTH A.S.HALAVATY,G.MINASOV,L.SHUVALOVA,J.WINSOR,I.DUBROVSKA, JRNL AUTH 2 S.PETERSON,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 1.75 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF A PUTATIVE NTP JRNL TITL 2 PYROPHOSPHOHYDROLASE (YFAO) FROM SALMONELLA TYPHIMURIUM LT2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 36254 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1911 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2559 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2133 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 237 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.27000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : 2.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.647 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2383 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1655 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3244 ; 1.502 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3992 ; 0.812 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 295 ; 3.929 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;29.501 ;23.361 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 422 ;10.538 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;12.554 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 344 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2707 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 506 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1416 ; 1.017 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 571 ; 0.271 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2305 ; 1.845 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 967 ; 2.528 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 939 ; 4.046 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1075 56.4458 14.9214 REMARK 3 T TENSOR REMARK 3 T11: 0.0610 T22: 0.0371 REMARK 3 T33: 0.0273 T12: -0.0045 REMARK 3 T13: 0.0061 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.8577 L22: 0.9478 REMARK 3 L33: 1.6873 L12: -0.3842 REMARK 3 L13: 0.3889 L23: -0.2897 REMARK 3 S TENSOR REMARK 3 S11: -0.0134 S12: -0.1326 S13: 0.1003 REMARK 3 S21: 0.1013 S22: 0.0925 S23: 0.0190 REMARK 3 S31: -0.0695 S32: -0.0919 S33: -0.0791 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4127 56.8390 7.8382 REMARK 3 T TENSOR REMARK 3 T11: 0.0581 T22: 0.0298 REMARK 3 T33: 0.0332 T12: -0.0110 REMARK 3 T13: 0.0050 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 1.5568 L22: 0.2945 REMARK 3 L33: 1.1785 L12: -0.4247 REMARK 3 L13: 0.3614 L23: -0.3739 REMARK 3 S TENSOR REMARK 3 S11: 0.0169 S12: 0.0572 S13: 0.1305 REMARK 3 S21: -0.0427 S22: 0.0085 S23: -0.0199 REMARK 3 S31: -0.0698 S32: 0.0189 S33: -0.0254 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 57 REMARK 3 ORIGIN FOR THE GROUP (A): 50.3126 38.6951 24.5130 REMARK 3 T TENSOR REMARK 3 T11: 0.0640 T22: 0.0883 REMARK 3 T33: 0.0579 T12: 0.0046 REMARK 3 T13: -0.0227 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 0.7325 L22: 3.8891 REMARK 3 L33: 1.5056 L12: 0.1043 REMARK 3 L13: 0.1805 L23: -1.2665 REMARK 3 S TENSOR REMARK 3 S11: 0.0185 S12: -0.1097 S13: 0.0220 REMARK 3 S21: 0.2840 S22: -0.1899 S23: -0.3768 REMARK 3 S31: 0.0053 S32: 0.1276 S33: 0.1714 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 58 B 141 REMARK 3 ORIGIN FOR THE GROUP (A): 47.0912 34.0375 20.3798 REMARK 3 T TENSOR REMARK 3 T11: 0.0939 T22: 0.0856 REMARK 3 T33: 0.0551 T12: 0.0117 REMARK 3 T13: 0.0039 T23: 0.0583 REMARK 3 L TENSOR REMARK 3 L11: 1.2613 L22: 3.9719 REMARK 3 L33: 1.3767 L12: -1.1708 REMARK 3 L13: 0.7257 L23: -1.0279 REMARK 3 S TENSOR REMARK 3 S11: 0.0609 S12: -0.0346 S13: -0.0307 REMARK 3 S21: -0.0439 S22: -0.1344 S23: -0.2784 REMARK 3 S31: 0.2465 S32: 0.0733 S33: 0.0736 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3OGA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000061078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND[111] REMARK 200 OPTICS : BE-LENSES/DIAMOND LAUE MONO REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38224 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.56500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3N77 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8 MG/ML PROTEIN IN 10 MM TRIS/HCL PH REMARK 280 8.3, 500 MM NACL, 5 MM BME. CRYSTALLIZATION CONDITION: THE JCSG+ REMARK 280 SUITE CONDITION 56 (1 M DI-AMMONIUM PHOSPHATE 0.1 M SODIUM REMARK 280 ACETATE PH 4.5), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.79450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.03750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.55200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.03750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.79450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.55200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ASN A 25 REMARK 465 ARG A 26 REMARK 465 GLY A 27 REMARK 465 VAL A 28 REMARK 465 PHE A 29 REMARK 465 PRO A 30 REMARK 465 ALA A 82 REMARK 465 ASP A 83 REMARK 465 MET B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 GLY B -14 REMARK 465 VAL B -13 REMARK 465 ASP B -12 REMARK 465 LEU B -11 REMARK 465 GLY B -10 REMARK 465 THR B -9 REMARK 465 GLU B -8 REMARK 465 ASN B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ILE B 78 REMARK 465 LYS B 79 REMARK 465 THR B 80 REMARK 465 TYR B 81 REMARK 465 ALA B 82 REMARK 465 ASP B 83 REMARK 465 GLY B 84 REMARK 465 ARG B 85 REMARK 465 GLN B 86 REMARK 465 GLU B 87 REMARK 465 GLU B 88 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 70 -77.07 -107.66 REMARK 500 ASN A 108 -164.16 -110.27 REMARK 500 ASP B 24 99.64 -67.94 REMARK 500 ASN B 25 151.59 138.33 REMARK 500 TRP B 70 -78.27 -109.27 REMARK 500 ASN B 108 -108.06 -136.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 143 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3N77 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF IDP01880, PUTATIVE NTP PYROPHOSPHOHYDROLASE OF REMARK 900 SALMONELLA TYPHIMURIUM LT2 REMARK 900 RELATED ID: IDP01880 RELATED DB: TARGETDB DBREF 3OGA A 1 141 UNP Q8ZNF5 NUDI_SALTY 1 141 DBREF 3OGA B 1 141 UNP Q8ZNF5 NUDI_SALTY 1 141 SEQADV 3OGA MET A -23 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA HIS A -22 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA HIS A -21 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA HIS A -20 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA HIS A -19 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA HIS A -18 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA HIS A -17 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA SER A -16 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA SER A -15 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA GLY A -14 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA VAL A -13 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA ASP A -12 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA LEU A -11 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA GLY A -10 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA THR A -9 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA GLU A -8 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA ASN A -7 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA LEU A -6 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA TYR A -5 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA PHE A -4 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA GLN A -3 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA SER A -2 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA ASN A -1 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA ALA A 0 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA MET B -23 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA HIS B -22 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA HIS B -21 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA HIS B -20 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA HIS B -19 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA HIS B -18 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA HIS B -17 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA SER B -16 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA SER B -15 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA GLY B -14 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA VAL B -13 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA ASP B -12 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA LEU B -11 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA GLY B -10 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA THR B -9 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA GLU B -8 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA ASN B -7 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA LEU B -6 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA TYR B -5 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA PHE B -4 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA GLN B -3 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA SER B -2 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA ASN B -1 UNP Q8ZNF5 EXPRESSION TAG SEQADV 3OGA ALA B 0 UNP Q8ZNF5 EXPRESSION TAG SEQRES 1 A 165 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 165 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET ARG SEQRES 3 A 165 GLN ARG THR ILE VAL CYS PRO LEU ILE GLN ASN ASP GLY SEQRES 4 A 165 CYS TYR LEU LEU CYS LYS MET ALA ASP ASN ARG GLY VAL SEQRES 5 A 165 PHE PRO GLY GLN TRP ALA LEU SER GLY GLY GLY VAL GLU SEQRES 6 A 165 PRO GLY GLU ARG ILE GLU GLU ALA LEU ARG ARG GLU ILE SEQRES 7 A 165 ARG GLU GLU LEU GLY GLU GLN LEU ILE LEU SER ASP ILE SEQRES 8 A 165 THR PRO TRP THR PHE ARG ASP ASP ILE ARG ILE LYS THR SEQRES 9 A 165 TYR ALA ASP GLY ARG GLN GLU GLU ILE TYR MET ILE TYR SEQRES 10 A 165 LEU ILE PHE ASP CYS VAL SER ALA ASN ARG ASP ILE CYS SEQRES 11 A 165 ILE ASN ASP GLU PHE GLN ASP TYR ALA TRP VAL LYS PRO SEQRES 12 A 165 GLU GLU LEU ALA LEU TYR ASP LEU ASN VAL ALA THR ARG SEQRES 13 A 165 HIS THR LEU ALA LEU LYS GLY LEU LEU SEQRES 1 B 165 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 165 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET ARG SEQRES 3 B 165 GLN ARG THR ILE VAL CYS PRO LEU ILE GLN ASN ASP GLY SEQRES 4 B 165 CYS TYR LEU LEU CYS LYS MET ALA ASP ASN ARG GLY VAL SEQRES 5 B 165 PHE PRO GLY GLN TRP ALA LEU SER GLY GLY GLY VAL GLU SEQRES 6 B 165 PRO GLY GLU ARG ILE GLU GLU ALA LEU ARG ARG GLU ILE SEQRES 7 B 165 ARG GLU GLU LEU GLY GLU GLN LEU ILE LEU SER ASP ILE SEQRES 8 B 165 THR PRO TRP THR PHE ARG ASP ASP ILE ARG ILE LYS THR SEQRES 9 B 165 TYR ALA ASP GLY ARG GLN GLU GLU ILE TYR MET ILE TYR SEQRES 10 B 165 LEU ILE PHE ASP CYS VAL SER ALA ASN ARG ASP ILE CYS SEQRES 11 B 165 ILE ASN ASP GLU PHE GLN ASP TYR ALA TRP VAL LYS PRO SEQRES 12 B 165 GLU GLU LEU ALA LEU TYR ASP LEU ASN VAL ALA THR ARG SEQRES 13 B 165 HIS THR LEU ALA LEU LYS GLY LEU LEU HET BME A 142 4 HET BME A 143 8 HET PO4 A 144 5 HET PO4 A 145 5 HET PO4 A 146 5 HET PO4 A 147 5 HET BME B 142 4 HET PO4 B 143 10 HETNAM BME BETA-MERCAPTOETHANOL HETNAM PO4 PHOSPHATE ION FORMUL 3 BME 3(C2 H6 O S) FORMUL 5 PO4 5(O4 P 3-) FORMUL 11 HOH *237(H2 O) HELIX 1 1 ARG A 45 GLY A 59 1 15 HELIX 2 2 LYS A 118 TYR A 125 5 8 HELIX 3 3 ASN A 128 LYS A 138 1 11 HELIX 4 4 ARG B 45 GLY B 59 1 15 HELIX 5 5 LYS B 118 TYR B 125 5 8 HELIX 6 6 ASN B 128 GLY B 139 1 12 SHEET 1 A 5 TRP A 33 ALA A 34 0 SHEET 2 A 5 CYS A 16 MET A 22 -1 N CYS A 20 O ALA A 34 SHEET 3 A 5 ARG A 2 ASN A 13 -1 N ASN A 13 O CYS A 16 SHEET 4 A 5 GLN A 86 SER A 100 1 O ILE A 92 N ILE A 6 SHEET 5 A 5 LEU A 64 THR A 80 -1 N LYS A 79 O GLU A 87 SHEET 1 B 4 GLY A 38 GLY A 39 0 SHEET 2 B 4 ARG A 2 ASN A 13 -1 N VAL A 7 O GLY A 38 SHEET 3 B 4 CYS A 16 MET A 22 -1 O CYS A 16 N ASN A 13 SHEET 4 B 4 PHE A 111 VAL A 117 -1 O VAL A 117 N TYR A 17 SHEET 1 C 5 TRP B 33 ALA B 34 0 SHEET 2 C 5 CYS B 16 MET B 22 -1 N CYS B 20 O ALA B 34 SHEET 3 C 5 GLN B 3 ASN B 13 -1 N ASN B 13 O CYS B 16 SHEET 4 C 5 TYR B 90 SER B 100 1 O ILE B 92 N ILE B 6 SHEET 5 C 5 LEU B 64 ASP B 75 -1 N ARG B 73 O TYR B 93 SHEET 1 D 4 GLY B 38 GLY B 39 0 SHEET 2 D 4 GLN B 3 ASN B 13 -1 N VAL B 7 O GLY B 38 SHEET 3 D 4 CYS B 16 MET B 22 -1 O CYS B 16 N ASN B 13 SHEET 4 D 4 PHE B 111 VAL B 117 -1 O GLN B 112 N LYS B 21 LINK SG ACYS A 8 S2 ABME A 142 1555 1555 1.98 LINK SG ACYS A 106 S2 ABME A 143 1555 1555 2.00 LINK SG ACYS B 8 S2 ABME B 142 1555 1555 1.93 SITE 1 AC1 5 CYS A 8 TYR A 93 ALA A 130 THR A 134 SITE 2 AC1 5 HOH A 251 SITE 1 AC2 6 GLN A 61 GLU A 88 ILE A 105 CYS A 106 SITE 2 AC2 6 ALA A 123 HOH A 235 SITE 1 AC3 1 ARG A 45 SITE 1 AC4 6 ARG A 45 GLU A 47 GLU A 48 ARG A 51 SITE 2 AC4 6 HOH A 171 HOH A 264 SITE 1 AC5 7 ARG A 77 ASN A 128 HOH A 185 HOH A 219 SITE 2 AC5 7 HOH A 269 HOH A 284 PHE B 29 SITE 1 AC6 4 ARG A 51 ARG A 55 HOH A 179 HOH A 215 SITE 1 AC7 5 CYS B 8 TYR B 93 ALA B 130 THR B 134 SITE 2 AC7 5 HOH B 201 SITE 1 AC8 8 ARG B 4 GLY B 38 GLY B 39 ARG B 52 SITE 2 AC8 8 GLU B 53 HOH B 163 HOH B 219 HOH B 242 CRYST1 41.589 81.104 110.075 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024045 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012330 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009085 0.00000