HEADER HYDROLASE/DNA 17-AUG-10 3OH6 TITLE ALKA UNDAMAGED DNA COMPLEX: INTERROGATION OF A C:G BASE PAIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-3-METHYLADENINE GLYCOSYLASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA-3-METHYLADENINE GLYCOSYLASE II, 3-METHYLADENINE-DNA COMPND 5 GLYCOSYLASE II, INDUCIBLE, TAG II, DNA-3-METHYLADENINE GLYCOSIDASE COMPND 6 II; COMPND 7 EC: 3.2.2.21; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: 5'-D(*GP*CP*AP*TP*TP*CP*AP*TP*GP*TP*C)-3'; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: 5'-D(*GP*AP*CP*AP*(BRU)P*GP*AP*AP*(BRU)P*GP*CP*C)-3'; COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: AIDA, ALKA, B2068, JW2053; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RD2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS HELIX-HAIRPIN-HELIX, DNA REPAIR, ALKYLATION, GLYCOSYLASE, HYDROLASE- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.R.BOWMAN,S.LEE,S.WANG,G.L.VERDINE REVDAT 3 06-SEP-23 3OH6 1 SEQADV LINK REVDAT 2 24-NOV-10 3OH6 1 JRNL REVDAT 1 15-SEP-10 3OH6 0 JRNL AUTH B.R.BOWMAN,S.LEE,S.WANG,G.L.VERDINE JRNL TITL STRUCTURE OF ESCHERICHIA COLI ALKA IN COMPLEX WITH UNDAMAGED JRNL TITL 2 DNA. JRNL REF J.BIOL.CHEM. V. 285 35783 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20843803 JRNL DOI 10.1074/JBC.M110.155663 REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.170 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0005 - 5.5308 0.99 2729 139 0.1955 0.2433 REMARK 3 2 5.5308 - 4.3924 0.98 2673 155 0.1861 0.2098 REMARK 3 3 4.3924 - 3.8379 0.98 2692 139 0.2001 0.2214 REMARK 3 4 3.8379 - 3.4873 0.96 2628 135 0.2488 0.3886 REMARK 3 5 3.4873 - 3.2375 0.95 2585 143 0.2613 0.2978 REMARK 3 6 3.2375 - 3.0468 0.91 2515 112 0.2897 0.3130 REMARK 3 7 3.0468 - 2.8943 0.86 2323 129 0.3136 0.3773 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.28 REMARK 3 B_SOL : 32.68 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.94380 REMARK 3 B22 (A**2) : -6.94380 REMARK 3 B33 (A**2) : 13.88760 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2836 REMARK 3 ANGLE : 1.044 3956 REMARK 3 CHIRALITY : 0.063 429 REMARK 3 PLANARITY : 0.005 433 REMARK 3 DIHEDRAL : 22.791 1053 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3OH6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000061110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.0-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.91970 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10809 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.894 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.49300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1DIZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25-29% PEG3350, 100MM BISTRIS, 200MM REMARK 280 LI2SO4, 3% 6-AMINOCAPROIC ACID, PH 6.0-6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 70.15000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 70.15000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.40000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.70000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.15000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.10000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.15000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.10000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.15000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.70000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 70.15000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 70.15000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.40000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 70.15000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 70.15000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.40000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 70.15000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 71.10000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 70.15000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 23.70000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 70.15000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 23.70000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 70.15000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 71.10000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 70.15000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 70.15000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 47.40000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 282 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 15 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT B 18 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT B 19 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA B 21 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG B 23 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT B 24 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG C 1 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC C 3 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 113.49 -163.17 REMARK 500 SER A 26 -20.46 87.30 REMARK 500 HIS A 57 55.36 36.99 REMARK 500 GLN A 159 -86.91 -59.53 REMARK 500 ARG A 160 -3.47 -56.63 REMARK 500 PRO A 166 -16.80 -49.95 REMARK 500 GLU A 191 44.70 -105.20 REMARK 500 ILE A 198 108.19 -57.52 REMARK 500 ASP A 232 58.39 -113.58 REMARK 500 PHE A 245 64.79 -108.72 REMARK 500 PRO A 250 11.47 -55.59 REMARK 500 PRO A 262 50.49 -105.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OGD RELATED DB: PDB REMARK 900 RELATED ID: 3OH9 RELATED DB: PDB DBREF 3OH6 A 2 282 UNP P04395 3MG2_ECOLI 2 282 DBREF 3OH6 B 15 25 PDB 3OH6 3OH6 15 25 DBREF 3OH6 C 1 12 PDB 3OH6 3OH6 1 12 SEQADV 3OH6 MET A -6 UNP P04395 EXPRESSION TAG SEQADV 3OH6 ALA A -5 UNP P04395 EXPRESSION TAG SEQADV 3OH6 ASP A -4 UNP P04395 EXPRESSION TAG SEQADV 3OH6 ILE A -3 UNP P04395 EXPRESSION TAG SEQADV 3OH6 GLY A -2 UNP P04395 EXPRESSION TAG SEQADV 3OH6 SER A -1 UNP P04395 EXPRESSION TAG SEQADV 3OH6 GLU A 0 UNP P04395 EXPRESSION TAG SEQADV 3OH6 PHE A 1 UNP P04395 EXPRESSION TAG SEQADV 3OH6 CYS A 239 UNP P04395 TYR 239 ENGINEERED MUTATION SEQRES 1 A 289 MET ALA ASP ILE GLY SER GLU PHE TYR THR LEU ASN TRP SEQRES 2 A 289 GLN PRO PRO TYR ASP TRP SER TRP MET LEU GLY PHE LEU SEQRES 3 A 289 ALA ALA ARG ALA VAL SER SER VAL GLU THR VAL ALA ASP SEQRES 4 A 289 SER TYR TYR ALA ARG SER LEU ALA VAL GLY GLU TYR ARG SEQRES 5 A 289 GLY VAL VAL THR ALA ILE PRO ASP ILE ALA ARG HIS THR SEQRES 6 A 289 LEU HIS ILE ASN LEU SER ALA GLY LEU GLU PRO VAL ALA SEQRES 7 A 289 ALA GLU CYS LEU ALA LYS MET SER ARG LEU PHE ASP LEU SEQRES 8 A 289 GLN CYS ASN PRO GLN ILE VAL ASN GLY ALA LEU GLY ARG SEQRES 9 A 289 LEU GLY ALA ALA ARG PRO GLY LEU ARG LEU PRO GLY CYS SEQRES 10 A 289 VAL ASP ALA PHE GLU GLN GLY VAL ARG ALA ILE LEU GLY SEQRES 11 A 289 GLN LEU VAL SER VAL ALA MET ALA ALA LYS LEU THR ALA SEQRES 12 A 289 ARG VAL ALA GLN LEU TYR GLY GLU ARG LEU ASP ASP PHE SEQRES 13 A 289 PRO GLU TYR ILE CYS PHE PRO THR PRO GLN ARG LEU ALA SEQRES 14 A 289 ALA ALA ASP PRO GLN ALA LEU LYS ALA LEU GLY MET PRO SEQRES 15 A 289 LEU LYS ARG ALA GLU ALA LEU ILE HIS LEU ALA ASN ALA SEQRES 16 A 289 ALA LEU GLU GLY THR LEU PRO MET THR ILE PRO GLY ASP SEQRES 17 A 289 VAL GLU GLN ALA MET LYS THR LEU GLN THR PHE PRO GLY SEQRES 18 A 289 ILE GLY ARG TRP THR ALA ASN TYR PHE ALA LEU ARG GLY SEQRES 19 A 289 TRP GLN ALA LYS ASP VAL PHE LEU PRO ASP ASP CYS LEU SEQRES 20 A 289 ILE LYS GLN ARG PHE PRO GLY MET THR PRO ALA GLN ILE SEQRES 21 A 289 ARG ARG TYR ALA GLU ARG TRP LYS PRO TRP ARG SER TYR SEQRES 22 A 289 ALA LEU LEU HIS ILE TRP TYR THR GLU GLY TRP GLN PRO SEQRES 23 A 289 ASP GLU ALA SEQRES 1 B 11 DG DC DA DT DT DC DA DT DG DT DC SEQRES 1 C 12 DG DA DC DA BRU DG DA DA BRU DG DC DC MODRES 3OH6 BRU C 5 DU MODRES 3OH6 BRU C 9 DU HET BRU C 5 20 HET BRU C 9 20 HETNAM BRU 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE FORMUL 3 BRU 2(C9 H12 BR N2 O8 P) HELIX 1 1 ASP A 11 ALA A 23 1 13 HELIX 2 2 ALA A 65 PRO A 69 5 5 HELIX 3 3 VAL A 70 ASP A 83 1 14 HELIX 4 4 ASN A 87 GLY A 96 1 10 HELIX 5 5 ARG A 97 GLY A 99 5 3 HELIX 6 6 ASP A 112 GLY A 123 1 12 HELIX 7 7 SER A 127 GLY A 143 1 17 HELIX 8 8 THR A 157 ALA A 163 1 7 HELIX 9 9 ASP A 165 ALA A 171 1 7 HELIX 10 10 PRO A 175 GLU A 191 1 17 HELIX 11 11 ASP A 201 THR A 211 1 11 HELIX 12 12 GLY A 216 TRP A 228 1 13 HELIX 13 13 ASP A 238 PHE A 245 1 8 HELIX 14 14 TYR A 256 LYS A 261 5 6 HELIX 15 15 TRP A 263 THR A 274 1 12 SHEET 1 A 5 GLU A 0 ASN A 5 0 SHEET 2 A 5 THR A 58 LEU A 63 -1 O ILE A 61 N TYR A 2 SHEET 3 A 5 TYR A 44 ASP A 53 -1 N ILE A 51 O HIS A 60 SHEET 4 A 5 TYR A 34 VAL A 41 -1 N TYR A 35 O ALA A 50 SHEET 5 A 5 GLU A 28 ALA A 31 -1 N ALA A 31 O TYR A 34 SHEET 1 B 2 GLU A 144 ARG A 145 0 SHEET 2 B 2 ILE A 153 CYS A 154 -1 O CYS A 154 N GLU A 144 LINK O3' DA C 4 P BRU C 5 1555 1555 1.59 LINK O3' BRU C 5 P DG C 6 1555 1555 1.61 LINK O3' DA C 8 P BRU C 9 1555 1555 1.61 LINK O3' BRU C 9 P DG C 10 1555 1555 1.60 CISPEP 1 PRO A 8 PRO A 9 0 -0.33 CISPEP 2 LYS A 261 PRO A 262 0 -4.90 CRYST1 140.300 140.300 94.800 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007128 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007128 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010549 0.00000