HEADER HYDROLASE/HYDROLASE INHIBITOR 17-AUG-10 3OHL TITLE CATALYTIC DOMAIN OF STROMELYSIN-1 IN COMPLEX WITH N-HYDROXY-2-(4- TITLE 2 METHOXY-N-(PYRIDINE-3-YLMETHYL)PHENYLSULFONAMIDO)ACETAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: STROMELYSIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 100-266; COMPND 5 SYNONYM: SL-1, MATRIX METALLOPROTEINASE-3, MMP-3, TRANSIN-1; COMPND 6 EC: 3.4.24.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MMP3, STMY1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21(DE3)GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS MATRIXMETALLOPROTEINASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.KOWATZ,J.H.NAISMITH REVDAT 3 06-SEP-23 3OHL 1 REMARK LINK REVDAT 2 05-DEC-12 3OHL 1 REMARK VERSN REVDAT 1 29-JUN-11 3OHL 0 JRNL AUTH T.KOWATZ,J.H.NAISMITH JRNL TITL NON-RESONANCE RAMAN DIFFERENCE SPECTROSCOPY AS A TOOL TO JRNL TITL 2 PROBE ENTHALPY-ENTROPY COMPENSATION AND THE INTERFACIAL JRNL TITL 3 MOBILITY MODEL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0079 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 6479 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 341 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 434 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 24 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1272 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.30000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : -1.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.664 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.309 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.248 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.818 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.910 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1364 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 896 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1829 ; 0.824 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2147 ; 0.754 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 156 ; 5.421 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;30.882 ;23.485 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 190 ;11.212 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ; 8.731 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 188 ; 0.046 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1495 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 292 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): -18.5750 10.7580 -5.2800 REMARK 3 T TENSOR REMARK 3 T11: 0.4412 T22: 0.0797 REMARK 3 T33: 0.1460 T12: -0.0044 REMARK 3 T13: 0.1823 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 3.9191 L22: 7.3502 REMARK 3 L33: 5.2978 L12: -2.9736 REMARK 3 L13: -1.5773 L23: 1.5745 REMARK 3 S TENSOR REMARK 3 S11: 0.4102 S12: 0.3606 S13: 0.0248 REMARK 3 S21: -1.5871 S22: -0.3443 S23: -0.8137 REMARK 3 S31: -0.5207 S32: 0.0414 S33: -0.0658 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): -18.5540 16.0670 4.6450 REMARK 3 T TENSOR REMARK 3 T11: 0.0722 T22: 0.0407 REMARK 3 T33: 0.1430 T12: -0.0100 REMARK 3 T13: 0.0450 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.4133 L22: 5.7509 REMARK 3 L33: 2.9891 L12: 0.3561 REMARK 3 L13: -0.7428 L23: 1.3727 REMARK 3 S TENSOR REMARK 3 S11: 0.0654 S12: 0.0127 S13: 0.1067 REMARK 3 S21: -0.4106 S22: -0.0398 S23: -0.7159 REMARK 3 S31: -0.1551 S32: -0.0021 S33: -0.0255 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 1 REMARK 3 ORIGIN FOR THE GROUP (A): -20.1780 19.4830 17.2060 REMARK 3 T TENSOR REMARK 3 T11: 0.1900 T22: 0.0994 REMARK 3 T33: 0.2682 T12: -0.0533 REMARK 3 T13: -0.1893 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.1388 L22: 0.0968 REMARK 3 L33: 0.0278 L12: 0.1067 REMARK 3 L13: 0.0255 L23: 0.0184 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: 0.0092 S13: 0.0418 REMARK 3 S21: 0.0509 S22: 0.0137 S23: -0.0174 REMARK 3 S31: 0.0103 S32: 0.0164 S33: -0.0276 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 2 REMARK 3 ORIGIN FOR THE GROUP (A): -25.1960 8.9940 -2.2940 REMARK 3 T TENSOR REMARK 3 T11: 0.2092 T22: 0.1008 REMARK 3 T33: 0.0277 T12: -0.0483 REMARK 3 T13: 0.0209 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.3847 L22: 0.3429 REMARK 3 L33: 0.5704 L12: 0.3576 REMARK 3 L13: -0.4631 L23: -0.4401 REMARK 3 S TENSOR REMARK 3 S11: -0.0798 S12: -0.0253 S13: -0.0876 REMARK 3 S21: -0.1136 S22: -0.0266 S23: -0.0796 REMARK 3 S31: 0.1458 S32: 0.0133 S33: 0.1064 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 3 REMARK 3 ORIGIN FOR THE GROUP (A): -15.0190 11.2950 16.6670 REMARK 3 T TENSOR REMARK 3 T11: 0.1171 T22: 0.0425 REMARK 3 T33: 0.3308 T12: -0.0580 REMARK 3 T13: -0.1067 T23: 0.0682 REMARK 3 L TENSOR REMARK 3 L11: 0.2570 L22: 0.4469 REMARK 3 L33: 0.0697 L12: 0.3375 REMARK 3 L13: -0.0172 L23: -0.0308 REMARK 3 S TENSOR REMARK 3 S11: 0.0163 S12: -0.0052 S13: -0.1659 REMARK 3 S21: 0.0160 S22: -0.0035 S23: -0.2380 REMARK 3 S31: 0.0787 S32: -0.0400 S33: -0.0128 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 4 REMARK 3 ORIGIN FOR THE GROUP (A): -21.5930 7.5740 8.5490 REMARK 3 T TENSOR REMARK 3 T11: 0.1121 T22: 0.0696 REMARK 3 T33: 0.0566 T12: 0.0047 REMARK 3 T13: 0.0024 T23: 0.0449 REMARK 3 L TENSOR REMARK 3 L11: 0.0352 L22: 0.0952 REMARK 3 L33: 0.0228 L12: 0.0347 REMARK 3 L13: 0.0060 L23: 0.0371 REMARK 3 S TENSOR REMARK 3 S11: 0.0096 S12: -0.0015 S13: -0.0300 REMARK 3 S21: 0.0857 S22: -0.0106 S23: -0.0261 REMARK 3 S31: 0.0334 S32: -0.0037 S33: 0.0010 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 5 REMARK 3 ORIGIN FOR THE GROUP (A): -10.1900 9.8740 5.0390 REMARK 3 T TENSOR REMARK 3 T11: 0.1084 T22: 0.1422 REMARK 3 T33: 0.3950 T12: -0.0333 REMARK 3 T13: 0.0460 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 0.4638 L22: 0.9837 REMARK 3 L33: 0.0441 L12: -0.6697 REMARK 3 L13: 0.0790 L23: -0.1030 REMARK 3 S TENSOR REMARK 3 S11: -0.0148 S12: -0.0158 S13: -0.2736 REMARK 3 S21: 0.0298 S22: 0.0210 S23: 0.4570 REMARK 3 S31: 0.0039 S32: 0.0548 S33: -0.0062 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 6 REMARK 3 ORIGIN FOR THE GROUP (A): -9.5080 10.5020 8.9510 REMARK 3 T TENSOR REMARK 3 T11: 0.2551 T22: 0.3727 REMARK 3 T33: 0.6105 T12: 0.0448 REMARK 3 T13: -0.0838 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 30.5033 L22: 85.0574 REMARK 3 L33: 50.7521 L12: -28.9289 REMARK 3 L13: 39.3433 L23: -36.6987 REMARK 3 S TENSOR REMARK 3 S11: 0.3908 S12: 1.0988 S13: 0.7984 REMARK 3 S21: 2.3275 S22: -1.2932 S23: -5.5374 REMARK 3 S31: 0.6487 S32: 1.4115 S33: 0.9024 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 213 A 237 REMARK 3 ORIGIN FOR THE GROUP (A): -2.4340 17.7090 2.0300 REMARK 3 T TENSOR REMARK 3 T11: 0.2487 T22: 0.4247 REMARK 3 T33: 1.6469 T12: -0.1665 REMARK 3 T13: 0.2294 T23: 0.0905 REMARK 3 L TENSOR REMARK 3 L11: 6.8277 L22: 0.4588 REMARK 3 L33: 7.6104 L12: -1.3599 REMARK 3 L13: 1.7341 L23: 0.7324 REMARK 3 S TENSOR REMARK 3 S11: 0.3124 S12: -0.6471 S13: 0.2937 REMARK 3 S21: -0.1488 S22: 0.3044 S23: -0.3667 REMARK 3 S31: -0.4025 S32: 1.0818 S33: -0.6168 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3OHL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000061125. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6909 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.360 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1B8Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M (NH4)2SO4, 0.1 M NA-CACODYLATE, REMARK 280 PH 6.5, 29% PEG 8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.31350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 23.31350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.48200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.25600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.48200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.25600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.31350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.48200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.25600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 23.31350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.48200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.25600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -56.96400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 23.31350 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 18 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 215 REMARK 465 GLU A 216 REMARK 465 SER A 225 REMARK 465 LEU A 226 REMARK 465 THR A 227 REMARK 465 ASP A 228 REMARK 465 LEU A 229 REMARK 465 THR A 230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 89 63.58 35.11 REMARK 500 ARG A 149 -131.48 53.78 REMARK 500 HIS A 151 31.39 -149.18 REMARK 500 ASN A 162 -122.52 58.85 REMARK 500 ASP A 189 -150.29 -106.31 REMARK 500 PHE A 210 -167.60 -102.84 REMARK 500 LEU A 245 -57.12 -172.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 23 O REMARK 620 2 ASP A 107 OD2 118.0 REMARK 620 3 ASP A 107 OD1 70.0 48.1 REMARK 620 4 ASP A 182 O 72.6 169.3 142.5 REMARK 620 5 ASP A 182 OD1 80.4 101.7 95.6 80.5 REMARK 620 6 GLU A 184 O 149.5 77.5 119.0 92.5 124.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 9 O REMARK 620 2 ASP A 141 O 88.2 REMARK 620 3 GLY A 173 O 90.4 167.3 REMARK 620 4 ASN A 175 O 75.1 100.6 91.3 REMARK 620 5 ASP A 177 OD1 166.2 81.1 102.0 98.2 REMARK 620 6 HOH A 251 O 92.3 88.7 78.7 163.9 96.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 3 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 158 OD1 REMARK 620 2 GLY A 159 O 91.7 REMARK 620 3 GLY A 161 O 89.2 88.3 REMARK 620 4 VAL A 163 O 93.1 171.7 98.5 REMARK 620 5 ASP A 181 OD2 98.4 80.3 166.4 92.3 REMARK 620 6 GLU A 184 OE2 175.1 84.0 88.2 91.4 83.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 4 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 12 O REMARK 620 2 HIS A 151 NE2 77.7 REMARK 620 3 ASP A 153 OD2 68.9 100.2 REMARK 620 4 HIS A 166 NE2 71.5 122.5 111.6 REMARK 620 5 HIS A 179 ND1 167.0 104.5 98.2 116.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 5 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 OHL A 6 O REMARK 620 2 OHL A 6 OAE 82.4 REMARK 620 3 HIS A 201 NE2 101.1 103.7 REMARK 620 4 HIS A 205 NE2 164.0 91.0 94.7 REMARK 620 5 HIS A 211 NE2 79.9 144.7 109.5 97.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OHL A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 250 DBREF 3OHL A 83 249 UNP P08254 MMP3_HUMAN 100 266 SEQRES 1 A 167 PHE ARG THR PHE PRO GLY ILE PRO LYS TRP ARG LYS THR SEQRES 2 A 167 HIS LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP LEU SEQRES 3 A 167 PRO LYS ASP ALA VAL ASP SER ALA VAL GLU LYS ALA LEU SEQRES 4 A 167 LYS VAL TRP GLU GLU VAL THR PRO LEU THR PHE SER ARG SEQRES 5 A 167 LEU TYR GLU GLY GLU ALA ASP ILE MET ILE SER PHE ALA SEQRES 6 A 167 VAL ARG GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SEQRES 7 A 167 GLY ASN VAL LEU ALA HIS ALA TYR ALA PRO GLY PRO GLY SEQRES 8 A 167 ILE ASN GLY ASP ALA HIS PHE ASP ASP ASP GLU GLN TRP SEQRES 9 A 167 THR LYS ASP THR THR GLY THR ASN LEU PHE LEU VAL ALA SEQRES 10 A 167 ALA HIS GLU ILE GLY HIS SER LEU GLY LEU PHE HIS SER SEQRES 11 A 167 ALA ASN THR GLU ALA LEU MET TYR PRO LEU TYR HIS SER SEQRES 12 A 167 LEU THR ASP LEU THR ARG PHE ARG LEU SER GLN ASP ASP SEQRES 13 A 167 ILE ASN GLY ILE GLN SER LEU TYR GLY PRO PRO HET CA A 1 1 HET CA A 2 1 HET CA A 3 1 HET ZN A 4 1 HET ZN A 5 1 HET OHL A 6 24 HET SO4 A 250 5 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM OHL N-HYDROXY-N~2~-[(4-METHOXYPHENYL)SULFONYL]-N~2~- HETNAM 2 OHL (PYRIDIN-4-YLMETHYL)GLYCINAMIDE HETNAM SO4 SULFATE ION HETSYN OHL N-HYDROXY-2-(4-METHOXY-N-(PYRIDINE-3-YLMETHYL) HETSYN 2 OHL PHENYLSULFONAMIDO)ACETAMIDE FORMUL 2 CA 3(CA 2+) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 OHL C15 H17 N3 O5 S FORMUL 8 SO4 O4 S 2- FORMUL 9 HOH *16(H2 O) HELIX 1 1 PRO A 109 GLU A 126 1 18 HELIX 2 2 LEU A 195 LEU A 207 1 13 HELIX 3 3 SER A 235 GLY A 247 1 13 SHEET 1 A 2 ARG A 84 THR A 85 0 SHEET 2 A 2 LEU A 209 PHE A 210 -1 O PHE A 210 N ARG A 84 SHEET 1 B 5 THR A 131 LEU A 135 0 SHEET 2 B 5 HIS A 96 ILE A 101 1 N TYR A 99 O LEU A 135 SHEET 3 B 5 ILE A 142 ALA A 147 1 O ILE A 144 N ARG A 100 SHEET 4 B 5 ALA A 178 ASP A 181 1 O PHE A 180 N ALA A 147 SHEET 5 B 5 ALA A 165 ALA A 167 -1 N HIS A 166 O HIS A 179 SHEET 1 C 2 TRP A 186 THR A 187 0 SHEET 2 C 2 THR A 193 ASN A 194 1 O THR A 193 N THR A 187 LINK CA CA A 1 O HOH A 23 1555 1555 2.67 LINK CA CA A 1 OD2 ASP A 107 1555 1555 2.32 LINK CA CA A 1 OD1 ASP A 107 1555 1555 2.90 LINK CA CA A 1 O ASP A 182 1555 1555 2.30 LINK CA CA A 1 OD1 ASP A 182 1555 1555 2.34 LINK CA CA A 1 O GLU A 184 1555 1555 2.47 LINK CA CA A 2 O HOH A 9 1555 1555 2.25 LINK CA CA A 2 O ASP A 141 1555 1555 2.33 LINK CA CA A 2 O GLY A 173 1555 1555 2.32 LINK CA CA A 2 O ASN A 175 1555 1555 2.34 LINK CA CA A 2 OD1 ASP A 177 1555 1555 2.31 LINK CA CA A 2 O HOH A 251 1555 1555 2.56 LINK CA CA A 3 OD1 ASP A 158 1555 1555 2.35 LINK CA CA A 3 O GLY A 159 1555 1555 2.32 LINK CA CA A 3 O GLY A 161 1555 1555 2.34 LINK CA CA A 3 O VAL A 163 1555 1555 2.31 LINK CA CA A 3 OD2 ASP A 181 1555 1555 2.32 LINK CA CA A 3 OE2 GLU A 184 1555 1555 2.31 LINK ZN ZN A 4 O HOH A 12 1555 1555 2.07 LINK ZN ZN A 4 NE2 HIS A 151 1555 1555 2.10 LINK ZN ZN A 4 OD2 ASP A 153 1555 1555 2.02 LINK ZN ZN A 4 NE2 HIS A 166 1555 1555 2.14 LINK ZN ZN A 4 ND1 HIS A 179 1555 1555 2.12 LINK ZN ZN A 5 O OHL A 6 1555 1555 2.01 LINK ZN ZN A 5 OAE OHL A 6 1555 1555 2.03 LINK ZN ZN A 5 NE2 HIS A 201 1555 1555 2.12 LINK ZN ZN A 5 NE2 HIS A 205 1555 1555 2.11 LINK ZN ZN A 5 NE2 HIS A 211 1555 1555 2.10 SITE 1 AC1 4 HOH A 23 ASP A 107 ASP A 182 GLU A 184 SITE 1 AC2 6 HOH A 9 ASP A 141 GLY A 173 ASN A 175 SITE 2 AC2 6 ASP A 177 HOH A 251 SITE 1 AC3 6 ASP A 158 GLY A 159 GLY A 161 VAL A 163 SITE 2 AC3 6 ASP A 181 GLU A 184 SITE 1 AC4 5 HOH A 12 HIS A 151 ASP A 153 HIS A 166 SITE 2 AC4 5 HIS A 179 SITE 1 AC5 4 OHL A 6 HIS A 201 HIS A 205 HIS A 211 SITE 1 AC6 13 ZN A 5 ASN A 162 VAL A 163 LEU A 164 SITE 2 AC6 13 ALA A 165 LEU A 197 VAL A 198 HIS A 201 SITE 3 AC6 13 GLU A 202 HIS A 205 HIS A 211 LEU A 222 SITE 4 AC6 13 TYR A 223 SITE 1 AC7 2 PRO A 109 LYS A 110 CRYST1 56.964 120.512 46.627 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017555 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008298 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021447 0.00000