data_3OKO # _entry.id 3OKO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3OKO RCSB RCSB061236 WWPDB D_1000061236 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3OKD . unspecified PDB 3OKE . unspecified PDB 3OKK . unspecified PDB 3MHL . unspecified PDB 3MHM . unspecified PDB 3MHN . unspecified # _pdbx_database_status.entry_id 3OKO _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-08-25 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Blackler, R.J.' 1 'Evans, S.V.' 2 # _citation.id primary _citation.title ;A Common NH53K Mutation in the Combining Site of Antibodies Raised against Chlamydial LPS Glycoconjugates Significantly Increases Avidity. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 50 _citation.page_first 3357 _citation.page_last 3368 _citation.year 2011 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21405106 _citation.pdbx_database_id_DOI 10.1021/bi101886v # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Blackler, R.J.' 1 ? primary 'Brooks, C.L.' 2 ? primary 'Evans, D.W.' 3 ? primary 'Brade, L.' 4 ? primary 'Kosma, P.' 5 ? primary 'Brade, H.' 6 ? primary 'Evans, S.V.' 7 ? # _cell.entry_id 3OKO _cell.length_a 45.441 _cell.length_b 81.394 _cell.length_c 129.009 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3OKO _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'S25-39 Fab (IgG1k) light chain' 24022.961 1 ? ? ? ? 2 polymer nat 'S25-39 Fab (IgG1k) heavy chain' 24182.846 1 ? ? ? ? 3 branched man ;3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-8)-3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-4)-prop-2-en-1-yl 3-deoxy-alpha-D-manno-oct-2-ulopyranosidonic acid ; 718.610 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 5 water nat water 18.015 134 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;EVKLVESGGGLVQPGGSLRLACATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKAKGYTTEYSASVKGRFTISRDNSQSS LYLQMNTLRAEDSATYYCARDHDGYYERFAYWGQGTLVTVSAAATTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVT VTWNSGSLSTGVHTFPAVLSSDLYTLTSSVTVPSKTWPSETVTCNVAHPASSTKVDKKIVPR ; ;EVKLVESGGGLVQPGGSLRLACATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKAKGYTTEYSASVKGRFTISRDNSQSS LYLQMNTLRAEDSATYYCARDHDGYYERFAYWGQGTLVTVSAAATTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVT VTWNSGSLSTGVHTFPAVLSSDLYTLTSSVTVPSKTWPSETVTCNVAHPASSTKVDKKIVPR ; B ? 2 'polypeptide(L)' no no ;DIVMTQSPSSLAVSAGEKVTMNCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFALT ISSVQAEDLAVYYCKQSYNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER ANGVLNSWTDQDSKDSTYSMTSTLTLTKDEYERHNSYTCEASHKTSTSPIVKSFNRNEC ; ;DIVMTQSPSSLAVSAGEKVTMNCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFALT ISSVQAEDLAVYYCKQSYNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER ANGVLNSWTDQDSKDSTYSMTSTLTLTKDEYERHNSYTCEASHKTSTSPIVKSFNRNEC ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 VAL n 1 3 LYS n 1 4 LEU n 1 5 VAL n 1 6 GLU n 1 7 SER n 1 8 GLY n 1 9 GLY n 1 10 GLY n 1 11 LEU n 1 12 VAL n 1 13 GLN n 1 14 PRO n 1 15 GLY n 1 16 GLY n 1 17 SER n 1 18 LEU n 1 19 ARG n 1 20 LEU n 1 21 ALA n 1 22 CYS n 1 23 ALA n 1 24 THR n 1 25 SER n 1 26 GLY n 1 27 PHE n 1 28 THR n 1 29 PHE n 1 30 THR n 1 31 ASP n 1 32 TYR n 1 33 TYR n 1 34 MET n 1 35 SER n 1 36 TRP n 1 37 VAL n 1 38 ARG n 1 39 GLN n 1 40 PRO n 1 41 PRO n 1 42 GLY n 1 43 LYS n 1 44 ALA n 1 45 LEU n 1 46 GLU n 1 47 TRP n 1 48 LEU n 1 49 GLY n 1 50 PHE n 1 51 ILE n 1 52 ARG n 1 53 ASN n 1 54 LYS n 1 55 ALA n 1 56 LYS n 1 57 GLY n 1 58 TYR n 1 59 THR n 1 60 THR n 1 61 GLU n 1 62 TYR n 1 63 SER n 1 64 ALA n 1 65 SER n 1 66 VAL n 1 67 LYS n 1 68 GLY n 1 69 ARG n 1 70 PHE n 1 71 THR n 1 72 ILE n 1 73 SER n 1 74 ARG n 1 75 ASP n 1 76 ASN n 1 77 SER n 1 78 GLN n 1 79 SER n 1 80 SER n 1 81 LEU n 1 82 TYR n 1 83 LEU n 1 84 GLN n 1 85 MET n 1 86 ASN n 1 87 THR n 1 88 LEU n 1 89 ARG n 1 90 ALA n 1 91 GLU n 1 92 ASP n 1 93 SER n 1 94 ALA n 1 95 THR n 1 96 TYR n 1 97 TYR n 1 98 CYS n 1 99 ALA n 1 100 ARG n 1 101 ASP n 1 102 HIS n 1 103 ASP n 1 104 GLY n 1 105 TYR n 1 106 TYR n 1 107 GLU n 1 108 ARG n 1 109 PHE n 1 110 ALA n 1 111 TYR n 1 112 TRP n 1 113 GLY n 1 114 GLN n 1 115 GLY n 1 116 THR n 1 117 LEU n 1 118 VAL n 1 119 THR n 1 120 VAL n 1 121 SER n 1 122 ALA n 1 123 ALA n 1 124 ALA n 1 125 THR n 1 126 THR n 1 127 PRO n 1 128 PRO n 1 129 SER n 1 130 VAL n 1 131 TYR n 1 132 PRO n 1 133 LEU n 1 134 ALA n 1 135 PRO n 1 136 GLY n 1 137 SER n 1 138 ALA n 1 139 ALA n 1 140 GLN n 1 141 THR n 1 142 ASN n 1 143 SER n 1 144 MET n 1 145 VAL n 1 146 THR n 1 147 LEU n 1 148 GLY n 1 149 CYS n 1 150 LEU n 1 151 VAL n 1 152 LYS n 1 153 GLY n 1 154 TYR n 1 155 PHE n 1 156 PRO n 1 157 GLU n 1 158 PRO n 1 159 VAL n 1 160 THR n 1 161 VAL n 1 162 THR n 1 163 TRP n 1 164 ASN n 1 165 SER n 1 166 GLY n 1 167 SER n 1 168 LEU n 1 169 SER n 1 170 THR n 1 171 GLY n 1 172 VAL n 1 173 HIS n 1 174 THR n 1 175 PHE n 1 176 PRO n 1 177 ALA n 1 178 VAL n 1 179 LEU n 1 180 SER n 1 181 SER n 1 182 ASP n 1 183 LEU n 1 184 TYR n 1 185 THR n 1 186 LEU n 1 187 THR n 1 188 SER n 1 189 SER n 1 190 VAL n 1 191 THR n 1 192 VAL n 1 193 PRO n 1 194 SER n 1 195 LYS n 1 196 THR n 1 197 TRP n 1 198 PRO n 1 199 SER n 1 200 GLU n 1 201 THR n 1 202 VAL n 1 203 THR n 1 204 CYS n 1 205 ASN n 1 206 VAL n 1 207 ALA n 1 208 HIS n 1 209 PRO n 1 210 ALA n 1 211 SER n 1 212 SER n 1 213 THR n 1 214 LYS n 1 215 VAL n 1 216 ASP n 1 217 LYS n 1 218 LYS n 1 219 ILE n 1 220 VAL n 1 221 PRO n 1 222 ARG n 2 1 ASP n 2 2 ILE n 2 3 VAL n 2 4 MET n 2 5 THR n 2 6 GLN n 2 7 SER n 2 8 PRO n 2 9 SER n 2 10 SER n 2 11 LEU n 2 12 ALA n 2 13 VAL n 2 14 SER n 2 15 ALA n 2 16 GLY n 2 17 GLU n 2 18 LYS n 2 19 VAL n 2 20 THR n 2 21 MET n 2 22 ASN n 2 23 CYS n 2 24 LYS n 2 25 SER n 2 26 SER n 2 27 GLN n 2 28 SER n 2 29 LEU n 2 30 LEU n 2 31 ASN n 2 32 SER n 2 33 ARG n 2 34 THR n 2 35 ARG n 2 36 LYS n 2 37 ASN n 2 38 TYR n 2 39 LEU n 2 40 ALA n 2 41 TRP n 2 42 TYR n 2 43 GLN n 2 44 GLN n 2 45 LYS n 2 46 PRO n 2 47 GLY n 2 48 GLN n 2 49 SER n 2 50 PRO n 2 51 LYS n 2 52 LEU n 2 53 LEU n 2 54 ILE n 2 55 TYR n 2 56 TRP n 2 57 ALA n 2 58 SER n 2 59 THR n 2 60 ARG n 2 61 GLU n 2 62 SER n 2 63 GLY n 2 64 VAL n 2 65 PRO n 2 66 ASP n 2 67 ARG n 2 68 PHE n 2 69 THR n 2 70 GLY n 2 71 SER n 2 72 GLY n 2 73 SER n 2 74 GLY n 2 75 THR n 2 76 ASP n 2 77 PHE n 2 78 ALA n 2 79 LEU n 2 80 THR n 2 81 ILE n 2 82 SER n 2 83 SER n 2 84 VAL n 2 85 GLN n 2 86 ALA n 2 87 GLU n 2 88 ASP n 2 89 LEU n 2 90 ALA n 2 91 VAL n 2 92 TYR n 2 93 TYR n 2 94 CYS n 2 95 LYS n 2 96 GLN n 2 97 SER n 2 98 TYR n 2 99 ASN n 2 100 LEU n 2 101 ARG n 2 102 THR n 2 103 PHE n 2 104 GLY n 2 105 GLY n 2 106 GLY n 2 107 THR n 2 108 LYS n 2 109 LEU n 2 110 GLU n 2 111 ILE n 2 112 LYS n 2 113 ARG n 2 114 ALA n 2 115 ASP n 2 116 ALA n 2 117 ALA n 2 118 PRO n 2 119 THR n 2 120 VAL n 2 121 SER n 2 122 ILE n 2 123 PHE n 2 124 PRO n 2 125 PRO n 2 126 SER n 2 127 SER n 2 128 GLU n 2 129 GLN n 2 130 LEU n 2 131 THR n 2 132 SER n 2 133 GLY n 2 134 GLY n 2 135 ALA n 2 136 SER n 2 137 VAL n 2 138 VAL n 2 139 CYS n 2 140 PHE n 2 141 LEU n 2 142 ASN n 2 143 ASN n 2 144 PHE n 2 145 TYR n 2 146 PRO n 2 147 LYS n 2 148 ASP n 2 149 ILE n 2 150 ASN n 2 151 VAL n 2 152 LYS n 2 153 TRP n 2 154 LYS n 2 155 ILE n 2 156 ASP n 2 157 GLY n 2 158 SER n 2 159 GLU n 2 160 ARG n 2 161 ALA n 2 162 ASN n 2 163 GLY n 2 164 VAL n 2 165 LEU n 2 166 ASN n 2 167 SER n 2 168 TRP n 2 169 THR n 2 170 ASP n 2 171 GLN n 2 172 ASP n 2 173 SER n 2 174 LYS n 2 175 ASP n 2 176 SER n 2 177 THR n 2 178 TYR n 2 179 SER n 2 180 MET n 2 181 THR n 2 182 SER n 2 183 THR n 2 184 LEU n 2 185 THR n 2 186 LEU n 2 187 THR n 2 188 LYS n 2 189 ASP n 2 190 GLU n 2 191 TYR n 2 192 GLU n 2 193 ARG n 2 194 HIS n 2 195 ASN n 2 196 SER n 2 197 TYR n 2 198 THR n 2 199 CYS n 2 200 GLU n 2 201 ALA n 2 202 SER n 2 203 HIS n 2 204 LYS n 2 205 THR n 2 206 SER n 2 207 THR n 2 208 SER n 2 209 PRO n 2 210 ILE n 2 211 VAL n 2 212 LYS n 2 213 SER n 2 214 PHE n 2 215 ASN n 2 216 ARG n 2 217 ASN n 2 218 GLU n 2 219 CYS n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ? 'Mus musculus' 10090 ? ? Balb/c ? ? ? ? ? ? ? ? ? ? ? ? ? ascites 2 1 sample ? ? ? 'Mus musculus' 10090 ? ? Balb/c ? ? ? ? ? ? ? ? ? ? ? ? ? ascites # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3OKO 3OKO 1 1 ;EVKLVESGGGLVQPGGSLRLACATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKAKGYTTEYSASVKGRFTISRDNSQSS LYLQMNTLRAEDSATYYCARDHDGYYERFAYWGQGTLVTVSAAATTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVT VTWNSGSLSTGVHTFPAVLSSDLYTLTSSVTVPSKTWPSETVTCNVAHPASSTKVDKKIVPR ; ? 2 PDB 3OKO 3OKO 2 1 ;DIVMTQSPSSLAVSAGEKVTMNCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFALT ISSVQAEDLAVYYCKQSYNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER ANGVLNSWTDQDSKDSTYSMTSTLTLTKDEYERHNSYTCEASHKTSTSPIVKSFNRNEC ; ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3OKO B 1 ? 222 ? 3OKO 1 ? 213 ? 1 213 2 2 3OKO A 1 ? 219 ? 3OKO 1 ? 214 ? 1 214 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 KDA D-saccharide n 'prop-2-en-1-yl 3-deoxy-alpha-D-manno-oct-2-ulopyranosidonic acid' ? 'C11 H18 O8' 278.256 KDO 'D-saccharide, alpha linking' . '3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid' ? 'C8 H14 O8' 238.192 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3OKO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.47 _exptl_crystal.density_percent_sol 50.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'hanging drop' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PEG 3350, MPD, ZnAc, NaCacod, pH 6.5, hanging drop, temperature 289K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS' _diffrn_detector.pdbx_collection_date 2010-03-03 _diffrn_detector.details 'OSMIC BLUE MIRRORS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-002' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3OKO _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.840 _reflns.d_resolution_high 2.450 _reflns.number_obs 18149 _reflns.number_all ? _reflns.percent_possible_obs 99.600 _reflns.pdbx_Rmerge_I_obs 0.064 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.400 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.050 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.450 2.540 99.400 0.303 ? 3.2 4.030 ? ? ? ? ? ? ? 1 2.540 2.640 99.700 0.273 ? 3.4 4.070 ? ? ? ? ? ? ? 2 2.640 2.760 99.800 0.232 ? 4.0 4.090 ? ? ? ? ? ? ? 3 2.760 2.900 99.700 0.168 ? 5.1 4.110 ? ? ? ? ? ? ? 4 2.900 3.080 99.900 0.139 ? 6.1 4.110 ? ? ? ? ? ? ? 5 3.080 3.320 99.700 0.092 ? 8.8 4.110 ? ? ? ? ? ? ? 6 3.320 3.650 99.500 0.064 ? 12.4 4.060 ? ? ? ? ? ? ? 7 3.650 4.180 99.500 0.050 ? 16.4 4.040 ? ? ? ? ? ? ? 8 4.180 5.250 99.100 0.037 ? 22.4 4.020 ? ? ? ? ? ? ? 9 5.250 19.840 99.400 0.035 ? 21.3 3.900 ? ? ? ? ? ? ? 10 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3OKO _refine.ls_number_reflns_obs 18144 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.649 _refine.ls_d_res_high 2.450 _refine.ls_percent_reflns_obs 99.54 _refine.ls_R_factor_obs 0.2132 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2102 _refine.ls_R_factor_R_free 0.2672 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.10 _refine.ls_number_reflns_R_free 925 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.420 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 1.7709 _refine.aniso_B[2][2] -0.9129 _refine.aniso_B[3][3] -0.8580 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.335 _refine.solvent_model_param_bsol 37.986 _refine.pdbx_solvent_vdw_probe_radii 1.00 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.72 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.30 _refine.pdbx_overall_phase_error 28.26 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_ESU_R ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3341 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 50 _refine_hist.number_atoms_solvent 134 _refine_hist.number_atoms_total 3525 _refine_hist.d_res_high 2.450 _refine_hist.d_res_low 19.649 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 3490 'X-RAY DIFFRACTION' ? f_angle_d 1.093 ? ? 4754 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.186 ? ? 1263 'X-RAY DIFFRACTION' ? f_chiral_restr 0.070 ? ? 542 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 596 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.4500 2.5789 2394 0.3022 99.00 0.4112 . . 135 . . . . 'X-RAY DIFFRACTION' . 2.5789 2.7401 2424 0.2899 100.00 0.3336 . . 132 . . . . 'X-RAY DIFFRACTION' . 2.7401 2.9510 2423 0.2469 100.00 0.3646 . . 122 . . . . 'X-RAY DIFFRACTION' . 2.9510 3.2468 2477 0.2385 100.00 0.2779 . . 132 . . . . 'X-RAY DIFFRACTION' . 3.2468 3.7139 2433 0.2187 100.00 0.2883 . . 136 . . . . 'X-RAY DIFFRACTION' . 3.7139 4.6687 2471 0.1708 99.00 0.2011 . . 136 . . . . 'X-RAY DIFFRACTION' . 4.6687 19.6494 2597 0.1820 99.00 0.2348 . . 132 . . . . # _struct.entry_id 3OKO _struct.title 'Crystal structure of S25-39 in complex with Kdo(2.8)Kdo(2.4)Kdo' _struct.pdbx_descriptor 'S25-39 Fab (IgG1k) light chain, S25-39 Fab (IgG1k) heavy chain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3OKO _struct_keywords.text 'antibody, Fab, IgG, carbohydrate, IMMUNE SYSTEM' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 28 ? TYR A 32 ? THR B 28 TYR B 32 5 ? 5 HELX_P HELX_P2 2 ARG A 89 ? SER A 93 ? ARG B 83 SER B 87 5 ? 5 HELX_P HELX_P3 3 LYS A 195 ? TRP A 197 ? LYS B 186 TRP B 188 5 ? 3 HELX_P HELX_P4 4 PRO A 209 ? SER A 212 ? PRO B 200 SER B 203 5 ? 4 HELX_P HELX_P5 5 GLN B 85 ? LEU B 89 ? GLN A 79 LEU A 83 5 ? 5 HELX_P HELX_P6 6 SER B 126 ? SER B 132 ? SER A 121 SER A 127 1 ? 7 HELX_P HELX_P7 7 LYS B 188 ? ARG B 193 ? LYS A 183 ARG A 188 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 98 SG ? ? B CYS 22 B CYS 92 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf2 disulf ? ? A CYS 149 SG ? ? ? 1_555 A CYS 204 SG ? ? B CYS 140 B CYS 195 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? B CYS 23 SG ? ? ? 1_555 B CYS 94 SG ? ? A CYS 23 A CYS 88 1_555 ? ? ? ? ? ? ? 2.043 ? ? disulf4 disulf ? ? B CYS 139 SG ? ? ? 1_555 B CYS 199 SG ? ? A CYS 134 A CYS 194 1_555 ? ? ? ? ? ? ? 2.034 ? ? covale1 covale both ? C KDA . O4 ? ? ? 1_555 C KDO . C2 ? ? C KDA 1 C KDO 2 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale2 covale both ? C KDO . O8 ? ? ? 1_555 C KDO . C2 ? ? C KDO 2 C KDO 3 1_555 ? ? ? ? ? ? ? 1.439 ? ? metalc1 metalc ? ? B GLU 190 OE2 ? ? ? 1_555 D ZN . ZN ? ? A GLU 185 A ZN 215 1_555 ? ? ? ? ? ? ? 1.793 ? ? metalc2 metalc ? ? B HIS 194 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 189 A ZN 215 1_555 ? ? ? ? ? ? ? 1.756 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 155 A . ? PHE 146 B PRO 156 A ? PRO 147 B 1 -2.15 2 GLU 157 A . ? GLU 148 B PRO 158 A ? PRO 149 B 1 2.05 3 TRP 197 A . ? TRP 188 B PRO 198 A ? PRO 189 B 1 6.00 4 SER 7 B . ? SER 7 A PRO 8 B ? PRO 8 A 1 -6.67 5 TYR 145 B . ? TYR 140 A PRO 146 B ? PRO 141 A 1 3.44 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 4 ? D ? 4 ? E ? 4 ? F ? 3 ? G ? 4 ? H ? 6 ? I ? 4 ? J ? 4 ? K ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel G 3 4 ? anti-parallel H 1 2 ? parallel H 2 3 ? anti-parallel H 3 4 ? anti-parallel H 4 5 ? anti-parallel H 5 6 ? anti-parallel I 1 2 ? parallel I 2 3 ? anti-parallel I 3 4 ? anti-parallel J 1 2 ? anti-parallel J 2 3 ? anti-parallel J 3 4 ? anti-parallel K 1 2 ? anti-parallel K 2 3 ? anti-parallel K 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 3 ? SER A 7 ? LYS B 3 SER B 7 A 2 LEU A 18 ? SER A 25 ? LEU B 18 SER B 25 A 3 SER A 80 ? MET A 85 ? SER B 77 MET B 82 A 4 PHE A 70 ? ASP A 75 ? PHE B 67 ASP B 72 B 1 LEU A 11 ? VAL A 12 ? LEU B 11 VAL B 12 B 2 THR A 116 ? VAL A 120 ? THR B 107 VAL B 111 B 3 ALA A 94 ? ARG A 100 ? ALA B 88 ARG B 94 B 4 MET A 34 ? GLN A 39 ? MET B 34 GLN B 39 B 5 GLU A 46 ? ILE A 51 ? GLU B 46 ILE B 51 B 6 THR A 60 ? TYR A 62 ? THR B 57 TYR B 59 C 1 LEU A 11 ? VAL A 12 ? LEU B 11 VAL B 12 C 2 THR A 116 ? VAL A 120 ? THR B 107 VAL B 111 C 3 ALA A 94 ? ARG A 100 ? ALA B 88 ARG B 94 C 4 TYR A 111 ? TRP A 112 ? TYR B 102 TRP B 103 D 1 SER A 129 ? LEU A 133 ? SER B 120 LEU B 124 D 2 MET A 144 ? TYR A 154 ? MET B 135 TYR B 145 D 3 LEU A 183 ? PRO A 193 ? LEU B 174 PRO B 184 D 4 VAL A 172 ? THR A 174 ? VAL B 163 THR B 165 E 1 SER A 129 ? LEU A 133 ? SER B 120 LEU B 124 E 2 MET A 144 ? TYR A 154 ? MET B 135 TYR B 145 E 3 LEU A 183 ? PRO A 193 ? LEU B 174 PRO B 184 E 4 VAL A 178 ? SER A 180 ? VAL B 169 SER B 171 F 1 THR A 160 ? TRP A 163 ? THR B 151 TRP B 154 F 2 THR A 203 ? HIS A 208 ? THR B 194 HIS B 199 F 3 THR A 213 ? LYS A 218 ? THR B 204 LYS B 209 G 1 MET B 4 ? SER B 7 ? MET A 4 SER A 7 G 2 VAL B 19 ? SER B 25 ? VAL A 19 SER A 25 G 3 ASP B 76 ? ILE B 81 ? ASP A 70 ILE A 75 G 4 PHE B 68 ? SER B 73 ? PHE A 62 SER A 67 H 1 SER B 10 ? SER B 14 ? SER A 10 SER A 14 H 2 THR B 107 ? LYS B 112 ? THR A 102 LYS A 107 H 3 ALA B 90 ? GLN B 96 ? ALA A 84 GLN A 90 H 4 LEU B 39 ? GLN B 44 ? LEU A 33 GLN A 38 H 5 LYS B 51 ? TYR B 55 ? LYS A 45 TYR A 49 H 6 THR B 59 ? ARG B 60 ? THR A 53 ARG A 54 I 1 SER B 10 ? SER B 14 ? SER A 10 SER A 14 I 2 THR B 107 ? LYS B 112 ? THR A 102 LYS A 107 I 3 ALA B 90 ? GLN B 96 ? ALA A 84 GLN A 90 I 4 THR B 102 ? PHE B 103 ? THR A 97 PHE A 98 J 1 THR B 119 ? PHE B 123 ? THR A 114 PHE A 118 J 2 GLY B 134 ? PHE B 144 ? GLY A 129 PHE A 139 J 3 TYR B 178 ? THR B 187 ? TYR A 173 THR A 182 J 4 VAL B 164 ? TRP B 168 ? VAL A 159 TRP A 163 K 1 SER B 158 ? ARG B 160 ? SER A 153 ARG A 155 K 2 ASN B 150 ? ILE B 155 ? ASN A 145 ILE A 150 K 3 SER B 196 ? SER B 202 ? SER A 191 SER A 197 K 4 ILE B 210 ? ASN B 215 ? ILE A 205 ASN A 210 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 5 ? N VAL B 5 O ALA A 23 ? O ALA B 23 A 2 3 N LEU A 18 ? N LEU B 18 O MET A 85 ? O MET B 82 A 3 4 O TYR A 82 ? O TYR B 79 N SER A 73 ? N SER B 70 B 1 2 N VAL A 12 ? N VAL B 12 O THR A 119 ? O THR B 110 B 2 3 O THR A 116 ? O THR B 107 N TYR A 96 ? N TYR B 90 B 3 4 O TYR A 97 ? O TYR B 91 N VAL A 37 ? N VAL B 37 B 4 5 N ARG A 38 ? N ARG B 38 O GLU A 46 ? O GLU B 46 B 5 6 N PHE A 50 ? N PHE B 50 O GLU A 61 ? O GLU B 58 C 1 2 N VAL A 12 ? N VAL B 12 O THR A 119 ? O THR B 110 C 2 3 O THR A 116 ? O THR B 107 N TYR A 96 ? N TYR B 90 C 3 4 N ARG A 100 ? N ARG B 94 O TYR A 111 ? O TYR B 102 D 1 2 N LEU A 133 ? N LEU B 124 O GLY A 148 ? O GLY B 139 D 2 3 N VAL A 145 ? N VAL B 136 O VAL A 192 ? O VAL B 183 D 3 4 O SER A 189 ? O SER B 180 N HIS A 173 ? N HIS B 164 E 1 2 N LEU A 133 ? N LEU B 124 O GLY A 148 ? O GLY B 139 E 2 3 N VAL A 145 ? N VAL B 136 O VAL A 192 ? O VAL B 183 E 3 4 O THR A 185 ? O THR B 176 N VAL A 178 ? N VAL B 169 F 1 2 N THR A 162 ? N THR B 153 O ASN A 205 ? O ASN B 196 F 2 3 N HIS A 208 ? N HIS B 199 O THR A 213 ? O THR B 204 G 1 2 N SER B 7 ? N SER A 7 O ASN B 22 ? O ASN A 22 G 2 3 N VAL B 19 ? N VAL A 19 O ILE B 81 ? O ILE A 75 G 3 4 O THR B 80 ? O THR A 74 N THR B 69 ? N THR A 63 H 1 2 N LEU B 11 ? N LEU A 11 O GLU B 110 ? O GLU A 105 H 2 3 O THR B 107 ? O THR A 102 N TYR B 92 ? N TYR A 86 H 3 4 O LYS B 95 ? O LYS A 89 N ALA B 40 ? N ALA A 34 H 4 5 N TRP B 41 ? N TRP A 35 O LEU B 53 ? O LEU A 47 H 5 6 N TYR B 55 ? N TYR A 49 O THR B 59 ? O THR A 53 I 1 2 N LEU B 11 ? N LEU A 11 O GLU B 110 ? O GLU A 105 I 2 3 O THR B 107 ? O THR A 102 N TYR B 92 ? N TYR A 86 I 3 4 N GLN B 96 ? N GLN A 90 O THR B 102 ? O THR A 97 J 1 2 N THR B 119 ? N THR A 114 O ASN B 142 ? O ASN A 137 J 2 3 N VAL B 137 ? N VAL A 132 O LEU B 184 ? O LEU A 179 J 3 4 O THR B 183 ? O THR A 178 N LEU B 165 ? N LEU A 160 K 1 2 O SER B 158 ? O SER A 153 N ILE B 155 ? N ILE A 150 K 2 3 N ASN B 150 ? N ASN A 145 O SER B 202 ? O SER A 197 K 3 4 N CYS B 199 ? N CYS A 194 O LYS B 212 ? O LYS A 207 # _atom_sites.entry_id 3OKO _atom_sites.fract_transf_matrix[1][1] 0.022007 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012286 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007751 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 1 GLU GLU B . n A 1 2 VAL 2 2 2 VAL VAL B . n A 1 3 LYS 3 3 3 LYS LYS B . n A 1 4 LEU 4 4 4 LEU LEU B . n A 1 5 VAL 5 5 5 VAL VAL B . n A 1 6 GLU 6 6 6 GLU GLU B . n A 1 7 SER 7 7 7 SER SER B . n A 1 8 GLY 8 8 8 GLY GLY B . n A 1 9 GLY 9 9 9 GLY GLY B . n A 1 10 GLY 10 10 10 GLY GLY B . n A 1 11 LEU 11 11 11 LEU LEU B . n A 1 12 VAL 12 12 12 VAL VAL B . n A 1 13 GLN 13 13 13 GLN GLN B . n A 1 14 PRO 14 14 14 PRO PRO B . n A 1 15 GLY 15 15 15 GLY GLY B . n A 1 16 GLY 16 16 16 GLY GLY B . n A 1 17 SER 17 17 17 SER SER B . n A 1 18 LEU 18 18 18 LEU LEU B . n A 1 19 ARG 19 19 19 ARG ARG B . n A 1 20 LEU 20 20 20 LEU LEU B . n A 1 21 ALA 21 21 21 ALA ALA B . n A 1 22 CYS 22 22 22 CYS CYS B . n A 1 23 ALA 23 23 23 ALA ALA B . n A 1 24 THR 24 24 24 THR THR B . n A 1 25 SER 25 25 25 SER SER B . n A 1 26 GLY 26 26 26 GLY GLY B . n A 1 27 PHE 27 27 27 PHE PHE B . n A 1 28 THR 28 28 28 THR THR B . n A 1 29 PHE 29 29 29 PHE PHE B . n A 1 30 THR 30 30 30 THR THR B . n A 1 31 ASP 31 31 31 ASP ASP B . n A 1 32 TYR 32 32 32 TYR TYR B . n A 1 33 TYR 33 33 33 TYR TYR B . n A 1 34 MET 34 34 34 MET MET B . n A 1 35 SER 35 35 35 SER SER B . n A 1 36 TRP 36 36 36 TRP TRP B . n A 1 37 VAL 37 37 37 VAL VAL B . n A 1 38 ARG 38 38 38 ARG ARG B . n A 1 39 GLN 39 39 39 GLN GLN B . n A 1 40 PRO 40 40 40 PRO PRO B . n A 1 41 PRO 41 41 41 PRO PRO B . n A 1 42 GLY 42 42 42 GLY GLY B . n A 1 43 LYS 43 43 43 LYS LYS B . n A 1 44 ALA 44 44 44 ALA ALA B . n A 1 45 LEU 45 45 45 LEU LEU B . n A 1 46 GLU 46 46 46 GLU GLU B . n A 1 47 TRP 47 47 47 TRP TRP B . n A 1 48 LEU 48 48 48 LEU LEU B . n A 1 49 GLY 49 49 49 GLY GLY B . n A 1 50 PHE 50 50 50 PHE PHE B . n A 1 51 ILE 51 51 51 ILE ILE B . n A 1 52 ARG 52 52 52 ARG ARG B . n A 1 53 ASN 53 52 52 ASN ASN B A n A 1 54 LYS 54 52 52 LYS LYS B B n A 1 55 ALA 55 52 52 ALA ALA B C n A 1 56 LYS 56 53 53 LYS LYS B . n A 1 57 GLY 57 54 54 GLY GLY B . n A 1 58 TYR 58 55 55 TYR TYR B . n A 1 59 THR 59 56 56 THR THR B . n A 1 60 THR 60 57 57 THR THR B . n A 1 61 GLU 61 58 58 GLU GLU B . n A 1 62 TYR 62 59 59 TYR TYR B . n A 1 63 SER 63 60 60 SER SER B . n A 1 64 ALA 64 61 61 ALA ALA B . n A 1 65 SER 65 62 62 SER SER B . n A 1 66 VAL 66 63 63 VAL VAL B . n A 1 67 LYS 67 64 64 LYS LYS B . n A 1 68 GLY 68 65 65 GLY GLY B . n A 1 69 ARG 69 66 66 ARG ARG B . n A 1 70 PHE 70 67 67 PHE PHE B . n A 1 71 THR 71 68 68 THR THR B . n A 1 72 ILE 72 69 69 ILE ILE B . n A 1 73 SER 73 70 70 SER SER B . n A 1 74 ARG 74 71 71 ARG ARG B . n A 1 75 ASP 75 72 72 ASP ASP B . n A 1 76 ASN 76 73 73 ASN ASN B . n A 1 77 SER 77 74 74 SER SER B . n A 1 78 GLN 78 75 75 GLN GLN B . n A 1 79 SER 79 76 76 SER SER B . n A 1 80 SER 80 77 77 SER SER B . n A 1 81 LEU 81 78 78 LEU LEU B . n A 1 82 TYR 82 79 79 TYR TYR B . n A 1 83 LEU 83 80 80 LEU LEU B . n A 1 84 GLN 84 81 81 GLN GLN B . n A 1 85 MET 85 82 82 MET MET B . n A 1 86 ASN 86 82 82 ASN ASN B A n A 1 87 THR 87 82 82 THR THR B B n A 1 88 LEU 88 82 82 LEU LEU B C n A 1 89 ARG 89 83 83 ARG ARG B . n A 1 90 ALA 90 84 84 ALA ALA B . n A 1 91 GLU 91 85 85 GLU GLU B . n A 1 92 ASP 92 86 86 ASP ASP B . n A 1 93 SER 93 87 87 SER SER B . n A 1 94 ALA 94 88 88 ALA ALA B . n A 1 95 THR 95 89 89 THR THR B . n A 1 96 TYR 96 90 90 TYR TYR B . n A 1 97 TYR 97 91 91 TYR TYR B . n A 1 98 CYS 98 92 92 CYS CYS B . n A 1 99 ALA 99 93 93 ALA ALA B . n A 1 100 ARG 100 94 94 ARG ARG B . n A 1 101 ASP 101 95 95 ASP ASP B . n A 1 102 HIS 102 96 96 HIS HIS B . n A 1 103 ASP 103 97 97 ASP ASP B . n A 1 104 GLY 104 98 98 GLY GLY B . n A 1 105 TYR 105 99 99 TYR TYR B . n A 1 106 TYR 106 100 100 TYR TYR B . n A 1 107 GLU 107 100 100 GLU GLU B A n A 1 108 ARG 108 100 100 ARG ARG B B n A 1 109 PHE 109 100 100 PHE PHE B C n A 1 110 ALA 110 101 101 ALA ALA B . n A 1 111 TYR 111 102 102 TYR TYR B . n A 1 112 TRP 112 103 103 TRP TRP B . n A 1 113 GLY 113 104 104 GLY GLY B . n A 1 114 GLN 114 105 105 GLN GLN B . n A 1 115 GLY 115 106 106 GLY GLY B . n A 1 116 THR 116 107 107 THR THR B . n A 1 117 LEU 117 108 108 LEU LEU B . n A 1 118 VAL 118 109 109 VAL VAL B . n A 1 119 THR 119 110 110 THR THR B . n A 1 120 VAL 120 111 111 VAL VAL B . n A 1 121 SER 121 112 112 SER SER B . n A 1 122 ALA 122 113 113 ALA ALA B . n A 1 123 ALA 123 114 114 ALA ALA B . n A 1 124 ALA 124 115 115 ALA ALA B . n A 1 125 THR 125 116 116 THR THR B . n A 1 126 THR 126 117 117 THR THR B . n A 1 127 PRO 127 118 118 PRO PRO B . n A 1 128 PRO 128 119 119 PRO PRO B . n A 1 129 SER 129 120 120 SER SER B . n A 1 130 VAL 130 121 121 VAL VAL B . n A 1 131 TYR 131 122 122 TYR TYR B . n A 1 132 PRO 132 123 123 PRO PRO B . n A 1 133 LEU 133 124 124 LEU LEU B . n A 1 134 ALA 134 125 125 ALA ALA B . n A 1 135 PRO 135 126 126 PRO PRO B . n A 1 136 GLY 136 127 127 GLY ALA B . n A 1 137 SER 137 127 ? ? ? B A n A 1 138 ALA 138 127 ? ? ? B B n A 1 139 ALA 139 129 129 ALA ALA B . n A 1 140 GLN 140 131 ? ? ? B . n A 1 141 THR 141 132 132 THR ALA B . n A 1 142 ASN 142 133 133 ASN ASN B . n A 1 143 SER 143 134 134 SER SER B . n A 1 144 MET 144 135 135 MET MET B . n A 1 145 VAL 145 136 136 VAL VAL B . n A 1 146 THR 146 137 137 THR THR B . n A 1 147 LEU 147 138 138 LEU LEU B . n A 1 148 GLY 148 139 139 GLY GLY B . n A 1 149 CYS 149 140 140 CYS CYS B . n A 1 150 LEU 150 141 141 LEU LEU B . n A 1 151 VAL 151 142 142 VAL VAL B . n A 1 152 LYS 152 143 143 LYS LYS B . n A 1 153 GLY 153 144 144 GLY GLY B . n A 1 154 TYR 154 145 145 TYR TYR B . n A 1 155 PHE 155 146 146 PHE PHE B . n A 1 156 PRO 156 147 147 PRO PRO B . n A 1 157 GLU 157 148 148 GLU GLU B . n A 1 158 PRO 158 149 149 PRO PRO B . n A 1 159 VAL 159 150 150 VAL VAL B . n A 1 160 THR 160 151 151 THR THR B . n A 1 161 VAL 161 152 152 VAL VAL B . n A 1 162 THR 162 153 153 THR THR B . n A 1 163 TRP 163 154 154 TRP TRP B . n A 1 164 ASN 164 155 155 ASN ASN B . n A 1 165 SER 165 156 156 SER SER B . n A 1 166 GLY 166 157 157 GLY GLY B . n A 1 167 SER 167 158 158 SER SER B . n A 1 168 LEU 168 159 159 LEU LEU B . n A 1 169 SER 169 160 160 SER SER B . n A 1 170 THR 170 161 161 THR THR B . n A 1 171 GLY 171 162 162 GLY GLY B . n A 1 172 VAL 172 163 163 VAL VAL B . n A 1 173 HIS 173 164 164 HIS HIS B . n A 1 174 THR 174 165 165 THR THR B . n A 1 175 PHE 175 166 166 PHE PHE B . n A 1 176 PRO 176 167 167 PRO PRO B . n A 1 177 ALA 177 168 168 ALA ALA B . n A 1 178 VAL 178 169 169 VAL VAL B . n A 1 179 LEU 179 170 170 LEU LEU B . n A 1 180 SER 180 171 171 SER SER B . n A 1 181 SER 181 172 172 SER SER B . n A 1 182 ASP 182 173 173 ASP ASP B . n A 1 183 LEU 183 174 174 LEU LEU B . n A 1 184 TYR 184 175 175 TYR TYR B . n A 1 185 THR 185 176 176 THR THR B . n A 1 186 LEU 186 177 177 LEU LEU B . n A 1 187 THR 187 178 178 THR THR B . n A 1 188 SER 188 179 179 SER SER B . n A 1 189 SER 189 180 180 SER SER B . n A 1 190 VAL 190 181 181 VAL VAL B . n A 1 191 THR 191 182 182 THR THR B . n A 1 192 VAL 192 183 183 VAL VAL B . n A 1 193 PRO 193 184 184 PRO PRO B . n A 1 194 SER 194 185 185 SER SER B . n A 1 195 LYS 195 186 186 LYS LYS B . n A 1 196 THR 196 187 187 THR THR B . n A 1 197 TRP 197 188 188 TRP TRP B . n A 1 198 PRO 198 189 189 PRO PRO B . n A 1 199 SER 199 190 190 SER SER B . n A 1 200 GLU 200 191 191 GLU GLU B . n A 1 201 THR 201 192 192 THR THR B . n A 1 202 VAL 202 193 193 VAL VAL B . n A 1 203 THR 203 194 194 THR THR B . n A 1 204 CYS 204 195 195 CYS CYS B . n A 1 205 ASN 205 196 196 ASN ASN B . n A 1 206 VAL 206 197 197 VAL VAL B . n A 1 207 ALA 207 198 198 ALA ALA B . n A 1 208 HIS 208 199 199 HIS HIS B . n A 1 209 PRO 209 200 200 PRO PRO B . n A 1 210 ALA 210 201 201 ALA ALA B . n A 1 211 SER 211 202 202 SER SER B . n A 1 212 SER 212 203 203 SER SER B . n A 1 213 THR 213 204 204 THR THR B . n A 1 214 LYS 214 205 205 LYS LYS B . n A 1 215 VAL 215 206 206 VAL VAL B . n A 1 216 ASP 216 207 207 ASP ASP B . n A 1 217 LYS 217 208 208 LYS LYS B . n A 1 218 LYS 218 209 209 LYS LYS B . n A 1 219 ILE 219 210 210 ILE ILE B . n A 1 220 VAL 220 211 211 VAL VAL B . n A 1 221 PRO 221 212 212 PRO PRO B . n A 1 222 ARG 222 213 213 ARG ALA B . n B 2 1 ASP 1 1 1 ASP ASP A . n B 2 2 ILE 2 2 2 ILE ILE A . n B 2 3 VAL 3 3 3 VAL VAL A . n B 2 4 MET 4 4 4 MET MET A . n B 2 5 THR 5 5 5 THR THR A . n B 2 6 GLN 6 6 6 GLN GLN A . n B 2 7 SER 7 7 7 SER SER A . n B 2 8 PRO 8 8 8 PRO PRO A . n B 2 9 SER 9 9 9 SER SER A . n B 2 10 SER 10 10 10 SER SER A . n B 2 11 LEU 11 11 11 LEU LEU A . n B 2 12 ALA 12 12 12 ALA ALA A . n B 2 13 VAL 13 13 13 VAL VAL A . n B 2 14 SER 14 14 14 SER SER A . n B 2 15 ALA 15 15 15 ALA ALA A . n B 2 16 GLY 16 16 16 GLY GLY A . n B 2 17 GLU 17 17 17 GLU GLU A . n B 2 18 LYS 18 18 18 LYS LYS A . n B 2 19 VAL 19 19 19 VAL VAL A . n B 2 20 THR 20 20 20 THR THR A . n B 2 21 MET 21 21 21 MET MET A . n B 2 22 ASN 22 22 22 ASN ASN A . n B 2 23 CYS 23 23 23 CYS CYS A . n B 2 24 LYS 24 24 24 LYS LYS A . n B 2 25 SER 25 25 25 SER SER A . n B 2 26 SER 26 26 26 SER SER A . n B 2 27 GLN 27 27 27 GLN GLN A . n B 2 28 SER 28 27 27 SER SER A A n B 2 29 LEU 29 27 27 LEU LEU A B n B 2 30 LEU 30 27 27 LEU LEU A C n B 2 31 ASN 31 27 27 ASN ASN A D n B 2 32 SER 32 27 27 SER SER A E n B 2 33 ARG 33 27 27 ARG ARG A F n B 2 34 THR 34 28 28 THR THR A . n B 2 35 ARG 35 29 29 ARG ARG A . n B 2 36 LYS 36 30 30 LYS LYS A . n B 2 37 ASN 37 31 31 ASN ASN A . n B 2 38 TYR 38 32 32 TYR TYR A . n B 2 39 LEU 39 33 33 LEU LEU A . n B 2 40 ALA 40 34 34 ALA ALA A . n B 2 41 TRP 41 35 35 TRP TRP A . n B 2 42 TYR 42 36 36 TYR TYR A . n B 2 43 GLN 43 37 37 GLN GLN A . n B 2 44 GLN 44 38 38 GLN GLN A . n B 2 45 LYS 45 39 39 LYS LYS A . n B 2 46 PRO 46 40 40 PRO PRO A . n B 2 47 GLY 47 41 41 GLY GLY A . n B 2 48 GLN 48 42 42 GLN GLN A . n B 2 49 SER 49 43 43 SER SER A . n B 2 50 PRO 50 44 44 PRO PRO A . n B 2 51 LYS 51 45 45 LYS LYS A . n B 2 52 LEU 52 46 46 LEU LEU A . n B 2 53 LEU 53 47 47 LEU LEU A . n B 2 54 ILE 54 48 48 ILE ILE A . n B 2 55 TYR 55 49 49 TYR TYR A . n B 2 56 TRP 56 50 50 TRP TRP A . n B 2 57 ALA 57 51 51 ALA ALA A . n B 2 58 SER 58 52 52 SER SER A . n B 2 59 THR 59 53 53 THR THR A . n B 2 60 ARG 60 54 54 ARG ARG A . n B 2 61 GLU 61 55 55 GLU GLU A . n B 2 62 SER 62 56 56 SER SER A . n B 2 63 GLY 63 57 57 GLY GLY A . n B 2 64 VAL 64 58 58 VAL VAL A . n B 2 65 PRO 65 59 59 PRO PRO A . n B 2 66 ASP 66 60 60 ASP ASP A . n B 2 67 ARG 67 61 61 ARG ARG A . n B 2 68 PHE 68 62 62 PHE PHE A . n B 2 69 THR 69 63 63 THR THR A . n B 2 70 GLY 70 64 64 GLY GLY A . n B 2 71 SER 71 65 65 SER SER A . n B 2 72 GLY 72 66 66 GLY GLY A . n B 2 73 SER 73 67 67 SER SER A . n B 2 74 GLY 74 68 68 GLY GLY A . n B 2 75 THR 75 69 69 THR THR A . n B 2 76 ASP 76 70 70 ASP ASP A . n B 2 77 PHE 77 71 71 PHE PHE A . n B 2 78 ALA 78 72 72 ALA ALA A . n B 2 79 LEU 79 73 73 LEU LEU A . n B 2 80 THR 80 74 74 THR THR A . n B 2 81 ILE 81 75 75 ILE ILE A . n B 2 82 SER 82 76 76 SER SER A . n B 2 83 SER 83 77 77 SER SER A . n B 2 84 VAL 84 78 78 VAL VAL A . n B 2 85 GLN 85 79 79 GLN GLN A . n B 2 86 ALA 86 80 80 ALA ALA A . n B 2 87 GLU 87 81 81 GLU GLU A . n B 2 88 ASP 88 82 82 ASP ASP A . n B 2 89 LEU 89 83 83 LEU LEU A . n B 2 90 ALA 90 84 84 ALA ALA A . n B 2 91 VAL 91 85 85 VAL VAL A . n B 2 92 TYR 92 86 86 TYR TYR A . n B 2 93 TYR 93 87 87 TYR TYR A . n B 2 94 CYS 94 88 88 CYS CYS A . n B 2 95 LYS 95 89 89 LYS LYS A . n B 2 96 GLN 96 90 90 GLN GLN A . n B 2 97 SER 97 91 91 SER SER A . n B 2 98 TYR 98 92 92 TYR TYR A . n B 2 99 ASN 99 93 93 ASN ASN A . n B 2 100 LEU 100 94 94 LEU LEU A . n B 2 101 ARG 101 96 96 ARG ARG A . n B 2 102 THR 102 97 97 THR THR A . n B 2 103 PHE 103 98 98 PHE PHE A . n B 2 104 GLY 104 99 99 GLY GLY A . n B 2 105 GLY 105 100 100 GLY GLY A . n B 2 106 GLY 106 101 101 GLY GLY A . n B 2 107 THR 107 102 102 THR THR A . n B 2 108 LYS 108 103 103 LYS LYS A . n B 2 109 LEU 109 104 104 LEU LEU A . n B 2 110 GLU 110 105 105 GLU GLU A . n B 2 111 ILE 111 106 106 ILE ILE A . n B 2 112 LYS 112 107 107 LYS LYS A . n B 2 113 ARG 113 108 108 ARG ARG A . n B 2 114 ALA 114 109 109 ALA ALA A . n B 2 115 ASP 115 110 110 ASP ASP A . n B 2 116 ALA 116 111 111 ALA ALA A . n B 2 117 ALA 117 112 112 ALA ALA A . n B 2 118 PRO 118 113 113 PRO PRO A . n B 2 119 THR 119 114 114 THR THR A . n B 2 120 VAL 120 115 115 VAL VAL A . n B 2 121 SER 121 116 116 SER SER A . n B 2 122 ILE 122 117 117 ILE ILE A . n B 2 123 PHE 123 118 118 PHE PHE A . n B 2 124 PRO 124 119 119 PRO PRO A . n B 2 125 PRO 125 120 120 PRO PRO A . n B 2 126 SER 126 121 121 SER SER A . n B 2 127 SER 127 122 122 SER SER A . n B 2 128 GLU 128 123 123 GLU GLU A . n B 2 129 GLN 129 124 124 GLN GLN A . n B 2 130 LEU 130 125 125 LEU LEU A . n B 2 131 THR 131 126 126 THR THR A . n B 2 132 SER 132 127 127 SER SER A . n B 2 133 GLY 133 128 128 GLY GLY A . n B 2 134 GLY 134 129 129 GLY GLY A . n B 2 135 ALA 135 130 130 ALA ALA A . n B 2 136 SER 136 131 131 SER SER A . n B 2 137 VAL 137 132 132 VAL VAL A . n B 2 138 VAL 138 133 133 VAL VAL A . n B 2 139 CYS 139 134 134 CYS CYS A . n B 2 140 PHE 140 135 135 PHE PHE A . n B 2 141 LEU 141 136 136 LEU LEU A . n B 2 142 ASN 142 137 137 ASN ASN A . n B 2 143 ASN 143 138 138 ASN ASN A . n B 2 144 PHE 144 139 139 PHE PHE A . n B 2 145 TYR 145 140 140 TYR TYR A . n B 2 146 PRO 146 141 141 PRO PRO A . n B 2 147 LYS 147 142 142 LYS LYS A . n B 2 148 ASP 148 143 143 ASP ASP A . n B 2 149 ILE 149 144 144 ILE ILE A . n B 2 150 ASN 150 145 145 ASN ASN A . n B 2 151 VAL 151 146 146 VAL VAL A . n B 2 152 LYS 152 147 147 LYS LYS A . n B 2 153 TRP 153 148 148 TRP TRP A . n B 2 154 LYS 154 149 149 LYS LYS A . n B 2 155 ILE 155 150 150 ILE ILE A . n B 2 156 ASP 156 151 151 ASP ASP A . n B 2 157 GLY 157 152 152 GLY GLY A . n B 2 158 SER 158 153 153 SER SER A . n B 2 159 GLU 159 154 154 GLU GLU A . n B 2 160 ARG 160 155 155 ARG ARG A . n B 2 161 ALA 161 156 156 ALA ALA A . n B 2 162 ASN 162 157 157 ASN ASN A . n B 2 163 GLY 163 158 158 GLY GLY A . n B 2 164 VAL 164 159 159 VAL VAL A . n B 2 165 LEU 165 160 160 LEU LEU A . n B 2 166 ASN 166 161 161 ASN ASN A . n B 2 167 SER 167 162 162 SER SER A . n B 2 168 TRP 168 163 163 TRP TRP A . n B 2 169 THR 169 164 164 THR THR A . n B 2 170 ASP 170 165 165 ASP ASP A . n B 2 171 GLN 171 166 166 GLN GLN A . n B 2 172 ASP 172 167 167 ASP ASP A . n B 2 173 SER 173 168 168 SER SER A . n B 2 174 LYS 174 169 169 LYS LYS A . n B 2 175 ASP 175 170 170 ASP ASP A . n B 2 176 SER 176 171 171 SER SER A . n B 2 177 THR 177 172 172 THR THR A . n B 2 178 TYR 178 173 173 TYR TYR A . n B 2 179 SER 179 174 174 SER SER A . n B 2 180 MET 180 175 175 MET MET A . n B 2 181 THR 181 176 176 THR THR A . n B 2 182 SER 182 177 177 SER SER A . n B 2 183 THR 183 178 178 THR THR A . n B 2 184 LEU 184 179 179 LEU LEU A . n B 2 185 THR 185 180 180 THR THR A . n B 2 186 LEU 186 181 181 LEU LEU A . n B 2 187 THR 187 182 182 THR THR A . n B 2 188 LYS 188 183 183 LYS LYS A . n B 2 189 ASP 189 184 184 ASP ASP A . n B 2 190 GLU 190 185 185 GLU GLU A . n B 2 191 TYR 191 186 186 TYR TYR A . n B 2 192 GLU 192 187 187 GLU GLU A . n B 2 193 ARG 193 188 188 ARG ARG A . n B 2 194 HIS 194 189 189 HIS HIS A . n B 2 195 ASN 195 190 190 ASN ASN A . n B 2 196 SER 196 191 191 SER SER A . n B 2 197 TYR 197 192 192 TYR TYR A . n B 2 198 THR 198 193 193 THR THR A . n B 2 199 CYS 199 194 194 CYS CYS A . n B 2 200 GLU 200 195 195 GLU GLU A . n B 2 201 ALA 201 196 196 ALA ALA A . n B 2 202 SER 202 197 197 SER SER A . n B 2 203 HIS 203 198 198 HIS HIS A . n B 2 204 LYS 204 199 199 LYS LYS A . n B 2 205 THR 205 200 200 THR THR A . n B 2 206 SER 206 201 201 SER SER A . n B 2 207 THR 207 202 202 THR THR A . n B 2 208 SER 208 203 203 SER SER A . n B 2 209 PRO 209 204 204 PRO PRO A . n B 2 210 ILE 210 205 205 ILE ILE A . n B 2 211 VAL 211 206 206 VAL VAL A . n B 2 212 LYS 212 207 207 LYS LYS A . n B 2 213 SER 213 208 208 SER SER A . n B 2 214 PHE 214 209 209 PHE PHE A . n B 2 215 ASN 215 210 210 ASN ASN A . n B 2 216 ARG 216 211 211 ARG ARG A . n B 2 217 ASN 217 212 212 ASN ALA A . n B 2 218 GLU 218 213 ? ? ? A . n B 2 219 CYS 219 214 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN 1 215 1 ZN ZN A . E 5 HOH 1 214 1 HOH HOH B . E 5 HOH 2 215 3 HOH HOH B . E 5 HOH 3 216 7 HOH HOH B . E 5 HOH 4 217 8 HOH HOH B . E 5 HOH 5 218 12 HOH HOH B . E 5 HOH 6 219 13 HOH HOH B . E 5 HOH 7 220 14 HOH HOH B . E 5 HOH 8 221 15 HOH HOH B . E 5 HOH 9 222 16 HOH HOH B . E 5 HOH 10 223 18 HOH HOH B . E 5 HOH 11 224 19 HOH HOH B . E 5 HOH 12 225 22 HOH HOH B . E 5 HOH 13 226 24 HOH HOH B . E 5 HOH 14 227 25 HOH HOH B . E 5 HOH 15 228 26 HOH HOH B . E 5 HOH 16 229 30 HOH HOH B . E 5 HOH 17 230 33 HOH HOH B . E 5 HOH 18 231 35 HOH HOH B . E 5 HOH 19 232 36 HOH HOH B . E 5 HOH 20 233 37 HOH HOH B . E 5 HOH 21 234 38 HOH HOH B . E 5 HOH 22 235 40 HOH HOH B . E 5 HOH 23 236 41 HOH HOH B . E 5 HOH 24 237 45 HOH HOH B . E 5 HOH 25 238 46 HOH HOH B . E 5 HOH 26 239 47 HOH HOH B . E 5 HOH 27 240 51 HOH HOH B . E 5 HOH 28 241 52 HOH HOH B . E 5 HOH 29 242 53 HOH HOH B . E 5 HOH 30 243 55 HOH HOH B . E 5 HOH 31 244 56 HOH HOH B . E 5 HOH 32 245 57 HOH HOH B . E 5 HOH 33 246 58 HOH HOH B . E 5 HOH 34 247 61 HOH HOH B . E 5 HOH 35 248 63 HOH HOH B . E 5 HOH 36 249 64 HOH HOH B . E 5 HOH 37 250 65 HOH HOH B . E 5 HOH 38 251 66 HOH HOH B . E 5 HOH 39 252 67 HOH HOH B . E 5 HOH 40 253 68 HOH HOH B . E 5 HOH 41 254 70 HOH HOH B . E 5 HOH 42 255 72 HOH HOH B . E 5 HOH 43 256 74 HOH HOH B . E 5 HOH 44 257 77 HOH HOH B . E 5 HOH 45 258 80 HOH HOH B . E 5 HOH 46 259 82 HOH HOH B . E 5 HOH 47 260 83 HOH HOH B . E 5 HOH 48 261 84 HOH HOH B . E 5 HOH 49 262 87 HOH HOH B . E 5 HOH 50 263 88 HOH HOH B . E 5 HOH 51 264 89 HOH HOH B . E 5 HOH 52 265 90 HOH HOH B . E 5 HOH 53 266 91 HOH HOH B . E 5 HOH 54 267 93 HOH HOH B . E 5 HOH 55 268 94 HOH HOH B . E 5 HOH 56 269 98 HOH HOH B . E 5 HOH 57 270 99 HOH HOH B . E 5 HOH 58 271 101 HOH HOH B . E 5 HOH 59 272 103 HOH HOH B . E 5 HOH 60 273 105 HOH HOH B . E 5 HOH 61 274 108 HOH HOH B . E 5 HOH 62 275 109 HOH HOH B . E 5 HOH 63 276 111 HOH HOH B . E 5 HOH 64 277 112 HOH HOH B . E 5 HOH 65 278 114 HOH HOH B . E 5 HOH 66 279 117 HOH HOH B . E 5 HOH 67 280 119 HOH HOH B . E 5 HOH 68 281 121 HOH HOH B . E 5 HOH 69 282 122 HOH HOH B . E 5 HOH 70 283 124 HOH HOH B . E 5 HOH 71 284 125 HOH HOH B . E 5 HOH 72 285 131 HOH HOH B . E 5 HOH 73 286 132 HOH HOH B . E 5 HOH 74 287 133 HOH HOH B . F 5 HOH 1 95 95 HOH HOH A . F 5 HOH 2 216 2 HOH HOH A . F 5 HOH 3 217 4 HOH HOH A . F 5 HOH 4 218 5 HOH HOH A . F 5 HOH 5 219 6 HOH HOH A . F 5 HOH 6 220 9 HOH HOH A . F 5 HOH 7 221 10 HOH HOH A . F 5 HOH 8 222 11 HOH HOH A . F 5 HOH 9 223 17 HOH HOH A . F 5 HOH 10 224 20 HOH HOH A . F 5 HOH 11 225 21 HOH HOH A . F 5 HOH 12 226 23 HOH HOH A . F 5 HOH 13 227 27 HOH HOH A . F 5 HOH 14 228 28 HOH HOH A . F 5 HOH 15 229 29 HOH HOH A . F 5 HOH 16 230 31 HOH HOH A . F 5 HOH 17 231 32 HOH HOH A . F 5 HOH 18 232 34 HOH HOH A . F 5 HOH 19 233 39 HOH HOH A . F 5 HOH 20 234 42 HOH HOH A . F 5 HOH 21 235 43 HOH HOH A . F 5 HOH 22 236 44 HOH HOH A . F 5 HOH 23 237 48 HOH HOH A . F 5 HOH 24 238 49 HOH HOH A . F 5 HOH 25 239 50 HOH HOH A . F 5 HOH 26 240 54 HOH HOH A . F 5 HOH 27 241 59 HOH HOH A . F 5 HOH 28 242 60 HOH HOH A . F 5 HOH 29 243 62 HOH HOH A . F 5 HOH 30 244 69 HOH HOH A . F 5 HOH 31 245 71 HOH HOH A . F 5 HOH 32 246 73 HOH HOH A . F 5 HOH 33 247 75 HOH HOH A . F 5 HOH 34 248 76 HOH HOH A . F 5 HOH 35 249 78 HOH HOH A . F 5 HOH 36 250 79 HOH HOH A . F 5 HOH 37 251 81 HOH HOH A . F 5 HOH 38 252 85 HOH HOH A . F 5 HOH 39 253 86 HOH HOH A . F 5 HOH 40 254 92 HOH HOH A . F 5 HOH 41 255 96 HOH HOH A . F 5 HOH 42 256 97 HOH HOH A . F 5 HOH 43 257 100 HOH HOH A . F 5 HOH 44 258 102 HOH HOH A . F 5 HOH 45 259 104 HOH HOH A . F 5 HOH 46 260 106 HOH HOH A . F 5 HOH 47 261 107 HOH HOH A . F 5 HOH 48 262 110 HOH HOH A . F 5 HOH 49 263 113 HOH HOH A . F 5 HOH 50 264 115 HOH HOH A . F 5 HOH 51 265 116 HOH HOH A . F 5 HOH 52 266 118 HOH HOH A . F 5 HOH 53 267 120 HOH HOH A . F 5 HOH 54 268 123 HOH HOH A . F 5 HOH 55 269 126 HOH HOH A . F 5 HOH 56 270 127 HOH HOH A . F 5 HOH 57 271 128 HOH HOH A . F 5 HOH 58 272 129 HOH HOH A . F 5 HOH 59 273 130 HOH HOH A . F 5 HOH 60 274 134 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4710 ? 1 MORE -40 ? 1 'SSA (A^2)' 19390 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id OE2 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id B _pdbx_struct_conn_angle.ptnr1_label_comp_id GLU _pdbx_struct_conn_angle.ptnr1_label_seq_id 190 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id GLU _pdbx_struct_conn_angle.ptnr1_auth_seq_id 185 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id ZN _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id D _pdbx_struct_conn_angle.ptnr2_label_comp_id ZN _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id ZN _pdbx_struct_conn_angle.ptnr2_auth_seq_id 215 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id NE2 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id B _pdbx_struct_conn_angle.ptnr3_label_comp_id HIS _pdbx_struct_conn_angle.ptnr3_label_seq_id 194 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id HIS _pdbx_struct_conn_angle.ptnr3_auth_seq_id 189 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 98.1 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-04-06 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-03-07 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' diffrn_source 2 4 'Structure model' atom_site 3 4 'Structure model' chem_comp 4 4 'Structure model' entity 5 4 'Structure model' pdbx_branch_scheme 6 4 'Structure model' pdbx_chem_comp_identifier 7 4 'Structure model' pdbx_entity_branch 8 4 'Structure model' pdbx_entity_branch_descriptor 9 4 'Structure model' pdbx_entity_branch_link 10 4 'Structure model' pdbx_entity_branch_list 11 4 'Structure model' pdbx_entity_nonpoly 12 4 'Structure model' pdbx_nonpoly_scheme 13 4 'Structure model' pdbx_struct_assembly_gen 14 4 'Structure model' pdbx_struct_conn_angle 15 4 'Structure model' struct_asym 16 4 'Structure model' struct_conn 17 4 'Structure model' struct_ref_seq 18 4 'Structure model' struct_site 19 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_diffrn_source.source' 2 4 'Structure model' '_atom_site.auth_asym_id' 3 4 'Structure model' '_atom_site.auth_atom_id' 4 4 'Structure model' '_atom_site.auth_seq_id' 5 4 'Structure model' '_atom_site.label_asym_id' 6 4 'Structure model' '_atom_site.label_atom_id' 7 4 'Structure model' '_atom_site.label_entity_id' 8 4 'Structure model' '_chem_comp.mon_nstd_flag' 9 4 'Structure model' '_chem_comp.name' 10 4 'Structure model' '_chem_comp.type' 11 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 23 4 'Structure model' '_struct_conn.pdbx_dist_value' 24 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 25 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 4 'Structure model' '_struct_ref_seq.db_align_end' # _pdbx_phasing_MR.entry_id 3OKO _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 37.900 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 19.840 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 19.840 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 d*TREK '9.7 W8RSSI' 'Mar 25 2008' package 'Jim W. Pflugrath' Jim.Pflugrath@Rigaku.com 'data scaling' http://www.rigaku.com/software/dtrek.html ? ? 2 PHASER 2.1.4 'Thu Nov 13 10:53:32 2008' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 PHENIX 1.7_650 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 237 ? ? O B HOH 277 ? ? 1.91 2 1 O B HOH 235 ? ? O A HOH 235 ? ? 1.94 3 1 O A SER 52 ? ? O A HOH 243 ? ? 2.12 4 1 OG1 B THR 116 ? ? O B HOH 271 ? ? 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS B 43 ? ? -117.22 -169.79 2 1 ASP B 95 ? ? -114.57 -152.31 3 1 TYR B 99 ? ? -124.60 -61.80 4 1 GLU B 100 A ? -104.99 79.51 5 1 ALA A 51 ? ? 73.30 -39.74 6 1 ALA A 84 ? ? 177.53 167.66 7 1 LEU A 94 ? ? 57.58 -135.95 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 PRO _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 126 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLY _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 127 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 149.51 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B THR 132 ? OG1 ? A THR 141 OG1 2 1 Y 1 B THR 132 ? CG2 ? A THR 141 CG2 3 1 Y 1 B ARG 213 ? CG ? A ARG 222 CG 4 1 Y 1 B ARG 213 ? CD ? A ARG 222 CD 5 1 Y 1 B ARG 213 ? NE ? A ARG 222 NE 6 1 Y 1 B ARG 213 ? CZ ? A ARG 222 CZ 7 1 Y 1 B ARG 213 ? NH1 ? A ARG 222 NH1 8 1 Y 1 B ARG 213 ? NH2 ? A ARG 222 NH2 9 1 Y 1 A ASN 212 ? CG ? B ASN 217 CG 10 1 Y 1 A ASN 212 ? OD1 ? B ASN 217 OD1 11 1 Y 1 A ASN 212 ? ND2 ? B ASN 217 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B SER 127 A A SER 137 2 1 Y 1 B ALA 127 B A ALA 138 3 1 Y 1 B GLN 131 ? A GLN 140 4 1 Y 1 A GLU 213 ? B GLU 218 5 1 Y 1 A CYS 214 ? B CYS 219 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 3 KDA 1 C KDA 1 C KDA 301 n C 3 KDO 2 C KDO 2 C KDO 302 n C 3 KDO 3 C KDO 3 C KDO 303 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KDO 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DKdopa KDO 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Kdop KDO 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Kdo # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 'WURCS=2.0/2,3,2/[Aad1122h-2a_2-6_2*OCC=C][Aad1122h-2a_2-6]/1-2-2/a4-b2_b8-c2' WURCS PDB2Glycan 1.1.0 2 3 '[][propyl]{[(1+2)][a-D-Kdop]{[(4+2)][a-D-Kdop]{[(8+2)][a-D-Kdop]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 3 2 KDO C2 O2 1 KDA O4 HO4 sing ? 2 3 3 KDO C2 O2 2 KDO O8 HO8 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 KDA 1 n 3 KDO 2 n 3 KDO 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 water HOH #