HEADER TRANSFERASE 26-AUG-10 3OM2 TITLE CRYSTAL STRUCTURE OF B. MEGATERIUM LEVANSUCRASE MUTANT D257A COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEVANSUCRASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LEVANSUCRASE SACB, UNP RESIDUES 29-484; COMPND 5 EC: 2.4.1.10; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 3 ORGANISM_COMMON: BACILLUS FRUCTOSUS; SOURCE 4 ORGANISM_TAXID: 1404; SOURCE 5 GENE: SACB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS FIVE FOLD BETA-PROPELLER, LEVANSUCRASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.P.STRUBE,A.HOMANN,M.GAMER,D.JAHN,J.SEIBEL,D.W.HEINZ REVDAT 3 21-FEB-24 3OM2 1 REMARK SEQADV LINK REVDAT 2 01-JUN-11 3OM2 1 JRNL REVDAT 1 23-MAR-11 3OM2 0 JRNL AUTH C.P.STRUBE,A.HOMANN,M.GAMER,D.JAHN,J.SEIBEL,D.W.HEINZ JRNL TITL POLYSACCHARIDE SYNTHESIS OF THE LEVANSUCRASE SACB FROM JRNL TITL 2 BACILLUS MEGATERIUM IS CONTROLLED BY DISTINCT SURFACE JRNL TITL 3 MOTIFS. JRNL REF J.BIOL.CHEM. V. 286 17593 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21454585 JRNL DOI 10.1074/JBC.M110.203166 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1796 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2474 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3539 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 657 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.59000 REMARK 3 B22 (A**2) : 1.09000 REMARK 3 B33 (A**2) : -0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.270 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3711 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5037 ; 1.315 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 465 ; 6.542 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;37.328 ;25.838 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 627 ;13.255 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;13.080 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 531 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2897 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2268 ; 0.690 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3669 ; 1.111 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1443 ; 1.889 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1368 ; 2.842 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3OM2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061286. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM16 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97881 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR SI REMARK 200 (111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35938 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SING 3 UL OF A 8 MG/ML PROTEIN REMARK 280 SOLUTION MIXED WITH 3 UL RESERVOIR BUFFER (0.1 M NA-PHOSPHATE- REMARK 280 CITRATE PH 4.1; 0.1 M MGSO4; 30% (W/V) PEG 400) IN THE DROPLET. , REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.50150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.80700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.64450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.80700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.50150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.64450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 29 REMARK 465 LYS A 30 REMARK 465 GLY A 31 REMARK 465 ASN A 32 REMARK 465 ASP A 33 REMARK 465 ASP A 482 REMARK 465 GLU A 483 REMARK 465 ASP A 484 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 94 -120.37 -111.95 REMARK 500 GLN A 195 43.32 -103.57 REMARK 500 LEU A 255 79.11 -164.79 REMARK 500 ASN A 320 45.73 -142.34 REMARK 500 THR A 346 -24.28 77.98 REMARK 500 ASP A 403 -40.80 69.46 REMARK 500 THR A 441 124.28 81.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 251 OD1 REMARK 620 2 GLN A 282 OE1 83.0 REMARK 620 3 LEU A 318 O 101.9 92.3 REMARK 620 4 ASN A 320 OD1 164.0 84.3 88.4 REMARK 620 5 ASP A 349 OD2 74.8 155.6 82.4 119.2 REMARK 620 6 ASP A 349 OD1 125.9 150.4 76.9 68.1 51.2 REMARK 620 7 HOH A 658 O 86.2 98.8 167.1 86.1 90.1 90.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 486 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 229 OD1 REMARK 620 2 CIT A 485 O6 173.1 REMARK 620 3 CIT A 485 O7 97.8 79.0 REMARK 620 4 CIT A 485 O2 93.9 91.8 84.2 REMARK 620 5 HOH A 533 O 92.1 92.2 166.3 85.7 REMARK 620 6 HOH A 543 O 84.4 89.9 95.9 178.3 94.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 488 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CIT A 487 O6 REMARK 620 2 CIT A 487 O7 76.5 REMARK 620 3 CIT A 487 O4 89.1 85.4 REMARK 620 4 HOH A 653 O 103.4 169.7 84.3 REMARK 620 5 HOH A 655 O 168.1 92.9 84.5 86.0 REMARK 620 6 HOH A 656 O 97.7 95.5 173.1 94.8 88.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 485 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 486 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 487 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 488 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OM4 RELATED DB: PDB REMARK 900 RELATED ID: 3OM5 RELATED DB: PDB REMARK 900 RELATED ID: 3OM6 RELATED DB: PDB REMARK 900 RELATED ID: 3OM7 RELATED DB: PDB DBREF 3OM2 A 29 484 UNP D5DC07 D5DC07_BACMD 29 484 SEQADV 3OM2 ALA A 257 UNP D5DC07 ASP 257 ENGINEERED MUTATION SEQRES 1 A 456 ALA LYS GLY ASN ASP SER LYS ASP PHE ASN ASN SER TYR SEQRES 2 A 456 GLY ILE SER HIS ILE THR ARG ASP ASN MET VAL LYS ILE SEQRES 3 A 456 PRO GLN GLN GLN ASN SER ASP GLN PHE LYS VAL PRO ALA SEQRES 4 A 456 PHE ASP GLU SER THR ILE LYS ASN ILE ALA SER ALA LYS SEQRES 5 A 456 GLY LYS ASN ALA SER GLY ASN THR ILE ASP LEU ASP VAL SEQRES 6 A 456 TRP ASP SER TRP PRO LEU GLN ASN ALA ASP GLY THR VAL SEQRES 7 A 456 ALA THR TYR HIS GLY TYR GLN ILE VAL PHE ALA LEU ALA SEQRES 8 A 456 GLY ASP PRO LYS ASP SER ASN ASP THR SER VAL TYR LEU SEQRES 9 A 456 PHE TYR LYS LYS ALA GLY ASP LYS SER ILE ASP SER TRP SEQRES 10 A 456 LYS ASN ALA GLY ARG VAL PHE LYS ASP SER ASP LYS PHE SEQRES 11 A 456 VAL PRO ASN ASP PRO HIS LEU LYS ASN GLN THR GLN GLU SEQRES 12 A 456 TRP SER GLY SER GLY THR LEU THR LYS ASP GLY LYS VAL SEQRES 13 A 456 ARG LEU PHE TYR THR ASP TYR SER GLY LYS GLN TYR GLY SEQRES 14 A 456 LYS GLN THR LEU THR THR ALA GLN VAL ASN MET SER GLN SEQRES 15 A 456 PRO ASN ASP ASN THR LEU LYS VAL ASP GLY VAL GLU ASP SEQRES 16 A 456 TYR LYS SER ILE PHE ASP GLY ASP GLY LYS ILE TYR GLN SEQRES 17 A 456 THR VAL GLN GLN PHE ILE ASP GLU GLY GLY TYR ASP THR SEQRES 18 A 456 GLY ASP ASN HIS THR LEU ARG ALA PRO HIS TYR ILE GLU SEQRES 19 A 456 ASP ASN GLY HIS LYS TYR LEU VAL PHE GLU ALA ASN THR SEQRES 20 A 456 GLY THR GLU ASP GLY TYR GLN GLY GLU ASP SER LEU TYR SEQRES 21 A 456 ASN ARG ALA TYR TYR GLY GLY ASN ASN PRO PHE PHE GLN SEQRES 22 A 456 SER GLU LYS LYS LYS LEU LEU GLU GLY SER ASN LYS GLU SEQRES 23 A 456 LYS ALA SER LEU ALA ASN GLY ALA LEU GLY ILE ILE GLU SEQRES 24 A 456 LEU ASN ASP ASP TYR THR LEU LYS LYS VAL MET LYS PRO SEQRES 25 A 456 LEU ILE THR SER ASN THR VAL THR ASP GLU ILE GLU ARG SEQRES 26 A 456 ALA ASN ILE PHE LYS LYS ASP GLY LYS TRP TYR LEU PHE SEQRES 27 A 456 THR ASP SER ARG GLY SER LYS MET THR ILE ASP GLY ILE SEQRES 28 A 456 GLY GLN ASP ASP VAL TYR MET LEU GLY TYR VAL SER ASN SEQRES 29 A 456 THR LEU THR GLY LYS TYR LYS PRO LEU ASN ASP THR GLY SEQRES 30 A 456 LEU VAL LEU HIS MET ASP LEU ASP PRO ASN ASP LYS THR SEQRES 31 A 456 PHE THR TYR SER HIS PHE ALA VAL PRO GLN THR LYS GLY SEQRES 32 A 456 ASP ASN VAL VAL ILE THR SER TYR MET THR ASN ARG GLY SEQRES 33 A 456 PHE TYR GLU ASP ASN HIS SER THR PHE ALA PRO SER PHE SEQRES 34 A 456 LEU VAL ASN ILE ASP GLY SER LYS THR SER VAL VAL LYS SEQRES 35 A 456 ASP ARG VAL LEU GLU GLN GLY GLN LEU THR VAL ASP GLU SEQRES 36 A 456 ASP HET CA A 1 1 HET CIT A 485 13 HET MG A 486 1 HET CIT A 487 13 HET MG A 488 1 HETNAM CA CALCIUM ION HETNAM CIT CITRIC ACID HETNAM MG MAGNESIUM ION FORMUL 2 CA CA 2+ FORMUL 3 CIT 2(C6 H8 O7) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *657(H2 O) HELIX 1 1 THR A 47 VAL A 52 1 6 HELIX 2 2 LYS A 53 GLN A 58 1 6 HELIX 3 3 ASP A 69 ILE A 73 5 5 HELIX 4 4 SER A 141 TRP A 145 5 5 HELIX 5 5 LYS A 153 VAL A 159 5 7 HELIX 6 6 HIS A 164 GLN A 168 5 5 HELIX 7 7 THR A 237 GLY A 245 1 9 HELIX 8 8 GLY A 246 GLY A 250 5 5 HELIX 9 9 GLY A 283 TYR A 293 5 11 HELIX 10 10 ASN A 296 GLY A 310 1 15 HELIX 11 11 ASN A 312 ALA A 319 1 8 HELIX 12 12 SER A 372 MET A 374 5 3 SHEET 1 A 5 SER A 44 HIS A 45 0 SHEET 2 A 5 ILE A 342 THR A 343 1 O THR A 343 N SER A 44 SHEET 3 A 5 GLY A 321 LEU A 328 -1 N LEU A 323 O ILE A 342 SHEET 4 A 5 HIS A 266 ASN A 274 -1 N ALA A 273 O ALA A 322 SHEET 5 A 5 ARG A 256 ASP A 263 -1 N HIS A 259 O VAL A 270 SHEET 1 B 4 SER A 44 HIS A 45 0 SHEET 2 B 4 ILE A 342 THR A 343 1 O THR A 343 N SER A 44 SHEET 3 B 4 GLY A 321 LEU A 328 -1 N LEU A 323 O ILE A 342 SHEET 4 B 4 LEU A 334 VAL A 337 -1 O LYS A 335 N GLU A 327 SHEET 1 C 2 LYS A 80 LYS A 82 0 SHEET 2 C 2 THR A 88 ASP A 90 -1 O ILE A 89 N GLY A 81 SHEET 1 D 8 LYS A 146 ARG A 150 0 SHEET 2 D 8 SER A 129 LYS A 136 -1 N TYR A 134 O LYS A 146 SHEET 3 D 8 TYR A 112 GLY A 120 -1 N VAL A 115 O PHE A 133 SHEET 4 D 8 ASP A 92 GLN A 100 -1 N LEU A 99 O ILE A 114 SHEET 5 D 8 GLN A 170 LEU A 178 1 O GLY A 176 N GLN A 100 SHEET 6 D 8 VAL A 184 SER A 192 -1 O THR A 189 N TRP A 172 SHEET 7 D 8 LYS A 198 ASN A 212 -1 O ALA A 204 N LEU A 186 SHEET 8 D 8 THR A 215 PHE A 228 -1 O ILE A 227 N LEU A 201 SHEET 1 E 4 GLU A 352 LYS A 359 0 SHEET 2 E 4 LYS A 362 ARG A 370 -1 O ASP A 368 N GLU A 352 SHEET 3 E 4 VAL A 384 SER A 391 -1 O LEU A 387 N THR A 367 SHEET 4 E 4 LYS A 399 PRO A 400 -1 O LYS A 399 N VAL A 390 SHEET 1 F 4 GLU A 352 LYS A 359 0 SHEET 2 F 4 LYS A 362 ARG A 370 -1 O ASP A 368 N GLU A 352 SHEET 3 F 4 VAL A 384 SER A 391 -1 O LEU A 387 N THR A 367 SHEET 4 F 4 LEU A 406 MET A 410 -1 O MET A 410 N VAL A 384 SHEET 1 G 3 THR A 420 VAL A 426 0 SHEET 2 G 3 ASN A 433 MET A 440 -1 O VAL A 435 N VAL A 426 SHEET 3 G 3 THR A 452 PHE A 453 -1 O THR A 452 N MET A 440 SHEET 1 H 4 THR A 420 VAL A 426 0 SHEET 2 H 4 ASN A 433 MET A 440 -1 O VAL A 435 N VAL A 426 SHEET 3 H 4 PHE A 457 ASP A 462 -1 O PHE A 457 N ILE A 436 SHEET 4 H 4 LYS A 465 VAL A 468 -1 O SER A 467 N ASN A 460 LINK CA CA A 1 OD1 ASP A 251 1555 1555 2.29 LINK CA CA A 1 OE1 GLN A 282 1555 1555 2.31 LINK CA CA A 1 O LEU A 318 1555 1555 2.37 LINK CA CA A 1 OD1 ASN A 320 1555 1555 2.41 LINK CA CA A 1 OD2 ASP A 349 1555 1555 2.48 LINK CA CA A 1 OD1 ASP A 349 1555 1555 2.57 LINK CA CA A 1 O HOH A 658 1555 1555 2.46 LINK OD1 ASP A 229 MG MG A 486 1555 1555 2.02 LINK O6 CIT A 485 MG MG A 486 1555 1555 2.07 LINK O7 CIT A 485 MG MG A 486 1555 1555 2.08 LINK O2 CIT A 485 MG MG A 486 1555 1555 2.10 LINK MG MG A 486 O HOH A 533 1555 1555 2.06 LINK MG MG A 486 O HOH A 543 1555 1555 2.08 LINK O6 CIT A 487 MG MG A 488 1555 1555 1.73 LINK O7 CIT A 487 MG MG A 488 1555 1555 2.15 LINK O4 CIT A 487 MG MG A 488 1555 1555 2.21 LINK MG MG A 488 O HOH A 653 1555 1555 2.22 LINK MG MG A 488 O HOH A 655 1555 1555 2.08 LINK MG MG A 488 O HOH A 656 1555 1555 2.17 SITE 1 AC1 6 ASP A 251 GLN A 282 LEU A 318 ASN A 320 SITE 2 AC1 6 ASP A 349 HOH A 658 SITE 1 AC2 16 PRO A 163 HIS A 164 SER A 226 ILE A 227 SITE 2 AC2 16 PHE A 228 ASP A 229 LEU A 334 MG A 486 SITE 3 AC2 16 HOH A 491 HOH A 533 HOH A 543 HOH A 545 SITE 4 AC2 16 HOH A 546 HOH A 561 HOH A 596 HOH A 795 SITE 1 AC3 4 ASP A 229 CIT A 485 HOH A 533 HOH A 543 SITE 1 AC4 16 ASP A 61 LYS A 64 PRO A 66 ALA A 67 SITE 2 AC4 16 GLY A 294 GLY A 295 LYS A 470 MG A 488 SITE 3 AC4 16 HOH A 539 HOH A 605 HOH A 652 HOH A 653 SITE 4 AC4 16 HOH A 655 HOH A 656 HOH A 810 HOH A 991 SITE 1 AC5 4 CIT A 487 HOH A 653 HOH A 655 HOH A 656 CRYST1 49.003 55.289 163.614 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020407 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018087 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006112 0.00000