HEADER TRANSPORT PROTEIN 26-AUG-10 3OMB TITLE CRYSTAL STRUCTURE OF EXTRACELLULAR SOLUTE-BINDING PROTEIN FROM TITLE 2 BIFIDOBACTERIUM LONGUM SUBSP. INFANTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRACELLULAR SOLUTE-BINDING PROTEIN, FAMILY 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BIFIDOBACTERIUM LONGUM SUBSP. INFANTIS ATCC SOURCE 3 15697; SOURCE 4 ORGANISM_TAXID: 391904; SOURCE 5 STRAIN: ATCC 15697 / DSM 20088 / NCTC 11817 / S12; SOURCE 6 GENE: BLON_2351; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)GOLD; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET DERIVATIVE KEYWDS PSI-2, MIDWEST CENTER FOR STRUCTURAL GENOMICS, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MCSG, TRANSPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,X.XU,S.CHIN,H.CUI,A.DONG,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 1 08-SEP-10 3OMB 0 JRNL AUTH C.CHANG,X.XU,S.CHIN,H.CUI,A.DONG,A.SAVCHENKO,A.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF EXTRACELLULAR SOLUTE-BINDING PROTEIN JRNL TITL 2 FROM BIFIDOBACTERIUM LONGUM SUBSP. INFANTIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1420 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1748 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.1440 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3945 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.355 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4138 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5631 ; 1.337 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 526 ; 5.594 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;38.482 ;26.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 714 ;15.360 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;17.928 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 601 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3186 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2569 ; 0.942 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4146 ; 1.725 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1569 ; 2.895 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1485 ; 4.581 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4138 ; 1.434 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 56.4495 31.0237 78.4628 REMARK 3 T TENSOR REMARK 3 T11: 0.0172 T22: 0.0165 REMARK 3 T33: 0.0230 T12: 0.0048 REMARK 3 T13: -0.0033 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.1843 L22: 0.1640 REMARK 3 L33: 0.2006 L12: 0.0661 REMARK 3 L13: 0.1551 L23: -0.0417 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: -0.0269 S13: -0.0013 REMARK 3 S21: 0.0287 S22: -0.0097 S23: 0.0171 REMARK 3 S31: -0.0047 S32: -0.0192 S33: -0.0061 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 161 A 345 REMARK 3 ORIGIN FOR THE GROUP (A): 51.9105 36.9059 42.9795 REMARK 3 T TENSOR REMARK 3 T11: 0.0141 T22: 0.0130 REMARK 3 T33: 0.0214 T12: -0.0026 REMARK 3 T13: -0.0012 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.1982 L22: 0.1551 REMARK 3 L33: 0.1805 L12: -0.0500 REMARK 3 L13: -0.0667 L23: 0.0500 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: 0.0077 S13: -0.0116 REMARK 3 S21: -0.0047 S22: 0.0017 S23: 0.0010 REMARK 3 S31: 0.0096 S32: 0.0029 S33: -0.0024 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 346 A 435 REMARK 3 ORIGIN FOR THE GROUP (A): 67.3576 29.5027 71.5998 REMARK 3 T TENSOR REMARK 3 T11: 0.0231 T22: 0.0229 REMARK 3 T33: 0.0264 T12: -0.0021 REMARK 3 T13: -0.0065 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.4948 L22: 0.3198 REMARK 3 L33: 0.3417 L12: -0.0954 REMARK 3 L13: -0.0727 L23: -0.0925 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: -0.0117 S13: -0.0465 REMARK 3 S21: -0.0096 S22: -0.0057 S23: -0.0562 REMARK 3 S31: 0.0130 S32: -0.0205 S33: -0.0080 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 436 A 533 REMARK 3 ORIGIN FOR THE GROUP (A): 42.6488 44.0206 57.0748 REMARK 3 T TENSOR REMARK 3 T11: 0.0155 T22: 0.0045 REMARK 3 T33: 0.0236 T12: -0.0010 REMARK 3 T13: 0.0002 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.2191 L22: 0.1112 REMARK 3 L33: 0.2028 L12: -0.0082 REMARK 3 L13: 0.0117 L23: 0.0367 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: -0.0062 S13: -0.0066 REMARK 3 S21: 0.0013 S22: -0.0026 S23: 0.0149 REMARK 3 S31: 0.0040 S32: -0.0184 S33: 0.0036 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3OMB COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-10. REMARK 100 THE RCSB ID CODE IS RCSB061295. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28262 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.50900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL3000, SHLEXD, SHELXE, MLPHARE, DM, RESOLVE, REMARK 200 COOT, ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 0.2M MGCL2, 25% REMARK 280 PEG3350, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.47450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.08850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.04950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.08850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.47450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.04950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 ARG A 3 REMARK 465 GLN A 4 REMARK 465 THR A 5 REMARK 465 MSE A 6 REMARK 465 VAL A 7 REMARK 465 LYS A 8 REMARK 465 ALA A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 VAL A 12 REMARK 465 ALA A 13 REMARK 465 CYS A 14 REMARK 465 ALA A 15 REMARK 465 VAL A 16 REMARK 465 ALA A 17 REMARK 465 LEU A 18 REMARK 465 LEU A 19 REMARK 465 GLY A 20 REMARK 465 SER A 21 REMARK 465 LEU A 22 REMARK 465 SER A 23 REMARK 465 ALA A 24 REMARK 465 CYS A 25 REMARK 465 GLY A 26 REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 LYS A 29 REMARK 465 LYS A 30 REMARK 465 SER A 31 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 32 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 297 -137.22 53.79 REMARK 500 LYS A 388 -87.24 -86.66 REMARK 500 SER A 418 -130.01 56.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 682 DISTANCE = 6.05 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 198 OD1 REMARK 620 2 ASP A 206 OD1 170.5 REMARK 620 3 GLN A 204 O 89.7 80.8 REMARK 620 4 ASN A 200 OD1 90.6 98.8 164.6 REMARK 620 5 GLU A 207 OE2 87.4 97.1 123.8 71.7 REMARK 620 6 ASN A 202 OD1 93.0 87.9 90.0 74.6 146.2 REMARK 620 7 GLU A 207 OE1 101.7 75.2 76.3 118.7 49.7 159.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC40167 RELATED DB: TARGETDB DBREF 3OMB A 1 534 UNP B7GNQ3 B7GNQ3_BIFLI 1 534 SEQADV 3OMB GLY A 0 UNP B7GNQ3 EXPRESSION TAG SEQRES 1 A 535 GLY MSE ARG ARG GLN THR MSE VAL LYS ALA GLY ALA VAL SEQRES 2 A 535 ALA CYS ALA VAL ALA LEU LEU GLY SER LEU SER ALA CYS SEQRES 3 A 535 GLY GLY SER LYS LYS SER THR THR THR ALA ASP GLY LYS SEQRES 4 A 535 PRO ILE VAL THR VAL LEU VAL LYS LYS ASN ALA ASN GLN SEQRES 5 A 535 GLU LYS MSE ALA ASN MSE GLN TRP ALA LYS ASP LEU GLU SEQRES 6 A 535 ALA ASP CYS ASP CYS LYS ILE GLU TRP GLN GLU VAL THR SEQRES 7 A 535 ARG GLU ALA TRP ALA GLN GLN LYS ASN ALA THR LEU ALA SEQRES 8 A 535 SER GLY ASP ILE ALA ASP VAL ASN LEU ASN GLY TYR GLY SEQRES 9 A 535 ALA VAL GLU ALA TYR GLN TYR PRO GLY MSE PHE GLU ASP SEQRES 10 A 535 LEU SER LYS ASP LEU ASP LYS LEU PRO ASN VAL LYS ALA SEQRES 11 A 535 PHE PHE LYS GLN LYS PRO ASP ALA LYS LYS MSE SER THR SEQRES 12 A 535 ASP SER LYS GLY ARG ILE TYR ALA ILE ALA ASP GLY ARG SEQRES 13 A 535 GLY LYS ALA TYR SER GLY THR GLY GLN HIS MSE LEU ILE SEQRES 14 A 535 ASN LYS ALA TRP LEU ASP LYS LEU GLY LEU GLN VAL PRO SEQRES 15 A 535 THR THR TRP ASP GLU LEU GLU ASN VAL LEU LYS ALA PHE SEQRES 16 A 535 LYS THR GLN ASP PRO ASN GLY ASN GLY GLN ALA ASP GLU SEQRES 17 A 535 ILE PRO MSE ASN ILE LYS LYS LEU GLU GLY SER TYR PHE SEQRES 18 A 535 THR TRP TYR SER PRO MSE LEU LEU LEU ASN SER THR GLY SEQRES 19 A 535 ILE VAL THR GLY PHE ASN LYS GLY VAL SER GLU TYR GLY SEQRES 20 A 535 PHE TYR ALA LYS ASN GLY VAL VAL LYS SER PHE LEU THR SEQRES 21 A 535 SER ASP GLU TYR LYS GLU VAL ILE LYS TYR TYR HIS LYS SEQRES 22 A 535 LEU ILE SER GLU GLY LEU ILE PRO ALA GLU TRP ALA THR SEQRES 23 A 535 LYS ASP ASP ASP ALA TYR ASN ALA ASP GLN ILE SER ASP SEQRES 24 A 535 GLY LYS THR ALA LYS THR GLY VAL VAL PHE GLY TRP SER SEQRES 25 A 535 PRO SER ASP ASN PHE GLY LYS LEU LYS ASP GLN TYR ILE SEQRES 26 A 535 ALA MSE PRO VAL PRO SER ALA PRO GLY VAL SER PRO ASP SEQRES 27 A 535 GLN THR VAL TRP ASP GLY SER SER SER GLU LEU SER PRO SEQRES 28 A 535 ALA GLY LEU SER ILE SER SER HIS ALA ALA ASN LYS ASP SEQRES 29 A 535 ALA ALA LEU LYS LEU ALA ASN LEU LEU TYR SER GLU LYS SEQRES 30 A 535 TYR SER VAL GLN GLN PHE LEU GLY SER PHE GLY LYS ALA SEQRES 31 A 535 ILE THR LYS THR GLY GLU HIS GLU TYR THR VAL ASP ASN SEQRES 32 A 535 ASP LYS LEU SER GLN LEU THR GLY ASP ASN GLN TYR PRO SEQRES 33 A 535 GLY LEU SER GLU LEU LEU VAL GLY TRP ILE PRO ASP GLU SEQRES 34 A 535 ALA THR ILE LYS GLY ASP THR HIS ALA ASP GLU LEU ILE SEQRES 35 A 535 GLU VAL ASN LYS VAL TYR GLU GLU GLN ARG SER HIS PHE SEQRES 36 A 535 ASP PRO VAL LYS ASP TYR ILE PRO ASP TYR VAL ASN MSE SEQRES 37 A 535 ASP ASN MSE ASP PRO SER ASP ALA THR LYS LEU ASN THR SEQRES 38 A 535 ASN ASN ALA GLU ILE PHE ASN THR THR MSE GLN LYS THR SEQRES 39 A 535 ALA THR TRP MSE SER LYS GLY GLY ILE ASP GLU GLU TRP SEQRES 40 A 535 ASP ALA TYR CYS LYS GLN LEU ASP SER ILE GLY LEU GLN SEQRES 41 A 535 GLU SER THR LYS ILE TRP GLN LYS TRP TYR ASP THR TYR SEQRES 42 A 535 THR LYS MODRES 3OMB MSE A 54 MET SELENOMETHIONINE MODRES 3OMB MSE A 57 MET SELENOMETHIONINE MODRES 3OMB MSE A 113 MET SELENOMETHIONINE MODRES 3OMB MSE A 140 MET SELENOMETHIONINE MODRES 3OMB MSE A 166 MET SELENOMETHIONINE MODRES 3OMB MSE A 210 MET SELENOMETHIONINE MODRES 3OMB MSE A 226 MET SELENOMETHIONINE MODRES 3OMB MSE A 326 MET SELENOMETHIONINE MODRES 3OMB MSE A 467 MET SELENOMETHIONINE MODRES 3OMB MSE A 470 MET SELENOMETHIONINE MODRES 3OMB MSE A 490 MET SELENOMETHIONINE MODRES 3OMB MSE A 497 MET SELENOMETHIONINE HET MSE A 54 8 HET MSE A 57 8 HET MSE A 113 8 HET MSE A 140 8 HET MSE A 166 8 HET MSE A 210 8 HET MSE A 226 8 HET MSE A 326 8 HET MSE A 467 8 HET MSE A 470 8 HET MSE A 490 8 HET MSE A 497 8 HET MG A 601 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 HOH *360(H2 O) HELIX 1 1 LYS A 53 ASN A 56 5 4 HELIX 2 2 MSE A 57 ASP A 68 1 12 HELIX 3 3 ARG A 78 GLY A 92 1 15 HELIX 4 4 ALA A 104 TYR A 110 1 7 HELIX 5 5 ASP A 116 LYS A 123 5 8 HELIX 6 6 LEU A 124 LYS A 134 1 11 HELIX 7 7 LYS A 134 THR A 142 1 9 HELIX 8 8 GLY A 156 SER A 160 5 5 HELIX 9 9 LYS A 170 GLY A 177 1 8 HELIX 10 10 THR A 183 GLN A 197 1 15 HELIX 11 11 SER A 224 GLY A 233 5 10 HELIX 12 12 GLY A 241 TYR A 245 5 5 HELIX 13 13 SER A 260 GLU A 276 1 17 HELIX 14 14 GLU A 282 LYS A 286 5 5 HELIX 15 15 ASP A 287 SER A 297 1 11 HELIX 16 16 SER A 311 GLY A 317 1 7 HELIX 17 17 LYS A 318 ASP A 321 5 4 HELIX 18 18 SER A 335 THR A 339 5 5 HELIX 19 19 ASN A 361 TYR A 373 1 13 HELIX 20 20 SER A 374 GLY A 384 1 11 HELIX 21 21 ASP A 401 ASP A 411 1 11 HELIX 22 22 LEU A 417 LEU A 421 5 5 HELIX 23 23 ASP A 434 SER A 452 1 19 HELIX 24 24 ASN A 466 MSE A 470 5 5 HELIX 25 25 ASP A 471 PHE A 486 1 16 HELIX 26 26 THR A 488 GLY A 500 1 13 HELIX 27 27 GLY A 501 ILE A 516 1 16 HELIX 28 28 GLY A 517 LYS A 534 1 18 SHEET 1 A 5 LYS A 70 THR A 77 0 SHEET 2 A 5 ILE A 40 LYS A 47 1 N VAL A 41 O LYS A 70 SHEET 3 A 5 VAL A 97 LEU A 99 1 O LEU A 99 N LEU A 44 SHEET 4 A 5 LEU A 348 ILE A 355 -1 O SER A 354 N ASN A 98 SHEET 5 A 5 ILE A 151 GLY A 154 -1 N ILE A 151 O LEU A 353 SHEET 1 B 4 ILE A 208 MSE A 210 0 SHEET 2 B 4 THR A 304 GLY A 309 1 O GLY A 305 N ILE A 208 SHEET 3 B 4 HIS A 165 ASN A 169 -1 N LEU A 167 O VAL A 307 SHEET 4 B 4 TYR A 323 ALA A 325 -1 O ILE A 324 N ILE A 168 SHEET 1 C 2 PHE A 247 LYS A 250 0 SHEET 2 C 2 VAL A 253 SER A 256 -1 O LYS A 255 N TYR A 248 SHEET 1 D 3 ILE A 390 GLY A 394 0 SHEET 2 D 3 GLU A 397 VAL A 400 -1 O THR A 399 N THR A 391 SHEET 3 D 3 THR A 430 LYS A 432 1 O LYS A 432 N VAL A 400 LINK C LYS A 53 N MSE A 54 1555 1555 1.34 LINK C MSE A 54 N ALA A 55 1555 1555 1.33 LINK C ASN A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N GLN A 58 1555 1555 1.33 LINK C GLY A 112 N MSE A 113 1555 1555 1.33 LINK C MSE A 113 N PHE A 114 1555 1555 1.33 LINK C LYS A 139 N MSE A 140 1555 1555 1.33 LINK C MSE A 140 N SER A 141 1555 1555 1.32 LINK C HIS A 165 N MSE A 166 1555 1555 1.33 LINK C MSE A 166 N LEU A 167 1555 1555 1.32 LINK C PRO A 209 N MSE A 210 1555 1555 1.33 LINK C MSE A 210 N ASN A 211 1555 1555 1.33 LINK C PRO A 225 N MSE A 226 1555 1555 1.34 LINK C MSE A 226 N LEU A 227 1555 1555 1.33 LINK C ALA A 325 N MSE A 326 1555 1555 1.33 LINK C MSE A 326 N PRO A 327 1555 1555 1.34 LINK C ASN A 466 N MSE A 467 1555 1555 1.33 LINK C MSE A 467 N ASP A 468 1555 1555 1.32 LINK C ASN A 469 N MSE A 470 1555 1555 1.33 LINK C MSE A 470 N ASP A 471 1555 1555 1.34 LINK C THR A 489 N MSE A 490 1555 1555 1.34 LINK C MSE A 490 N GLN A 491 1555 1555 1.33 LINK C TRP A 496 N MSE A 497 1555 1555 1.34 LINK C MSE A 497 N SER A 498 1555 1555 1.33 LINK OD1 ASP A 198 MG MG A 601 1555 1555 2.12 LINK OD1 ASP A 206 MG MG A 601 1555 1555 2.24 LINK O GLN A 204 MG MG A 601 1555 1555 2.30 LINK OD1 ASN A 200 MG MG A 601 1555 1555 2.35 LINK OE2 GLU A 207 MG MG A 601 1555 1555 2.36 LINK OD1 ASN A 202 MG MG A 601 1555 1555 2.44 LINK OE1 GLU A 207 MG MG A 601 1555 1555 2.73 SITE 1 AC1 6 ASP A 198 ASN A 200 ASN A 202 GLN A 204 SITE 2 AC1 6 ASP A 206 GLU A 207 CRYST1 54.949 70.099 122.177 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018199 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008185 0.00000