data_3OMJ # _entry.id 3OMJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3OMJ pdb_00003omj 10.2210/pdb3omj/pdb NDB NA0711 ? ? RCSB RCSB061303 ? ? WWPDB D_1000061303 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_struct_conn_angle 5 3 'Structure model' pdbx_validate_polymer_linkage 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.value' 23 3 'Structure model' '_struct_conn.pdbx_dist_value' 24 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 25 3 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 26 3 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 27 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 28 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 29 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 30 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 31 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 33 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 34 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 35 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 36 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 37 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 38 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 39 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 40 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 41 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 42 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 43 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3OMJ _pdbx_database_status.recvd_initial_deposition_date 2010-08-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Chenoweth, D.M.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Structural basis for cyclic py-im polyamide allosteric inhibition of nuclear receptor binding.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 132 _citation.page_first 14521 _citation.page_last 14529 _citation.year 2010 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20812704 _citation.pdbx_database_id_DOI 10.1021/ja105068b # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chenoweth, D.M.' 1 ? primary 'Dervan, P.B.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*(C38)P*AP*GP*TP*AP*CP*TP*GP*G)-3'" 3170.902 2 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 4 ? ? ? ? 3 non-polymer syn ;(23R,52R)-23,52-diamino-5,11,17,28,34,40,46,57-octamethyl-2,5,8,11,14,17,20,25,28,31,34,37,40,43,46,49,54,57,60,64-icosaazanonacyclo[54.2.1.1~4,7~.1~10,13~.1~16,19~.1~27,30~.1~33,36~.1~39,42~.1~45,48~]hexahexaconta-1(58),4(66),6,10(65),12,16(64),18,27(63),29,33(62),35,39(61),41,45(60),47,56(59)-hexadecaene-3,9,15,21,26,32,38,44,50,55-decone ; 1179.211 1 ? ? ? ? 4 water nat water 18.015 237 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(C38)(DA)(DG)(DT)(DA)(DC)(DT)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCAGTACTGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 ;(23R,52R)-23,52-diamino-5,11,17,28,34,40,46,57-octamethyl-2,5,8,11,14,17,20,25,28,31,34,37,40,43,46,49,54,57,60,64-icosaazanonacyclo[54.2.1.1~4,7~.1~10,13~.1~16,19~.1~27,30~.1~33,36~.1~39,42~.1~45,48~]hexahexaconta-1(58),4(66),6,10(65),12,16(64),18,27(63),29,33(62),35,39(61),41,45(60),47,56(59)-hexadecaene-3,9,15,21,26,32,38,44,50,55-decone ; 1P2 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 C38 n 1 3 DA n 1 4 DG n 1 5 DT n 1 6 DA n 1 7 DC n 1 8 DT n 1 9 DG n 1 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1P2 non-polymer . ;(23R,52R)-23,52-diamino-5,11,17,28,34,40,46,57-octamethyl-2,5,8,11,14,17,20,25,28,31,34,37,40,43,46,49,54,57,60,64-icosaazanonacyclo[54.2.1.1~4,7~.1~10,13~.1~16,19~.1~27,30~.1~33,36~.1~39,42~.1~45,48~]hexahexaconta-1(58),4(66),6,10(65),12,16(64),18,27(63),29,33(62),35,39(61),41,45(60),47,56(59)-hexadecaene-3,9,15,21,26,32,38,44,50,55-decone ; ? 'C54 H62 N22 O10' 1179.211 C38 'DNA linking' n "5-IODO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 I N3 O7 P' 433.094 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 C38 2 2 2 C38 C38 A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n B 1 1 DC 1 1 1 DC DC B . n B 1 2 C38 2 2 2 C38 C38 B . n B 1 3 DA 3 3 3 DA DA B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 DT 5 5 5 DT DT B . n B 1 6 DA 6 6 6 DA DA B . n B 1 7 DC 7 7 7 DC DC B . n B 1 8 DT 8 8 8 DT DT B . n B 1 9 DG 9 9 9 DG DG B . n B 1 10 DG 10 10 10 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA 1 302 302 CA CA A . D 2 CA 1 300 300 CA CA A . E 2 CA 1 301 301 CA CA A . F 3 1P2 1 500 500 1P2 1P2 B . G 2 CA 1 303 303 CA CA B . H 4 HOH 1 13 13 HOH HOH A . H 4 HOH 2 14 14 HOH HOH A . H 4 HOH 3 15 15 HOH HOH A . H 4 HOH 4 16 16 HOH HOH A . H 4 HOH 5 18 18 HOH HOH A . H 4 HOH 6 20 20 HOH HOH A . H 4 HOH 7 22 22 HOH HOH A . H 4 HOH 8 23 23 HOH HOH A . H 4 HOH 9 24 24 HOH HOH A . H 4 HOH 10 25 25 HOH HOH A . H 4 HOH 11 26 26 HOH HOH A . H 4 HOH 12 32 32 HOH HOH A . H 4 HOH 13 34 34 HOH HOH A . H 4 HOH 14 35 35 HOH HOH A . H 4 HOH 15 38 38 HOH HOH A . H 4 HOH 16 41 41 HOH HOH A . H 4 HOH 17 46 46 HOH HOH A . H 4 HOH 18 48 48 HOH HOH A . H 4 HOH 19 49 49 HOH HOH A . H 4 HOH 20 50 50 HOH HOH A . H 4 HOH 21 51 51 HOH HOH A . H 4 HOH 22 52 52 HOH HOH A . H 4 HOH 23 58 58 HOH HOH A . H 4 HOH 24 59 59 HOH HOH A . H 4 HOH 25 60 60 HOH HOH A . H 4 HOH 26 61 61 HOH HOH A . H 4 HOH 27 62 62 HOH HOH A . H 4 HOH 28 63 63 HOH HOH A . H 4 HOH 29 66 66 HOH HOH A . H 4 HOH 30 70 70 HOH HOH A . H 4 HOH 31 73 73 HOH HOH A . H 4 HOH 32 74 74 HOH HOH A . H 4 HOH 33 75 75 HOH HOH A . H 4 HOH 34 76 76 HOH HOH A . H 4 HOH 35 77 77 HOH HOH A . H 4 HOH 36 81 81 HOH HOH A . H 4 HOH 37 82 82 HOH HOH A . H 4 HOH 38 88 88 HOH HOH A . H 4 HOH 39 89 89 HOH HOH A . H 4 HOH 40 90 90 HOH HOH A . H 4 HOH 41 93 93 HOH HOH A . H 4 HOH 42 94 94 HOH HOH A . H 4 HOH 43 96 96 HOH HOH A . H 4 HOH 44 99 99 HOH HOH A . H 4 HOH 45 100 100 HOH HOH A . H 4 HOH 46 104 104 HOH HOH A . H 4 HOH 47 105 105 HOH HOH A . H 4 HOH 48 109 109 HOH HOH A . H 4 HOH 49 110 110 HOH HOH A . H 4 HOH 50 113 113 HOH HOH A . H 4 HOH 51 117 117 HOH HOH A . H 4 HOH 52 118 118 HOH HOH A . H 4 HOH 53 119 119 HOH HOH A . H 4 HOH 54 121 121 HOH HOH A . H 4 HOH 55 122 122 HOH HOH A . H 4 HOH 56 123 123 HOH HOH A . H 4 HOH 57 124 124 HOH HOH A . H 4 HOH 58 126 126 HOH HOH A . H 4 HOH 59 128 128 HOH HOH A . H 4 HOH 60 133 133 HOH HOH A . H 4 HOH 61 135 135 HOH HOH A . H 4 HOH 62 136 136 HOH HOH A . H 4 HOH 63 141 141 HOH HOH A . H 4 HOH 64 147 147 HOH HOH A . H 4 HOH 65 149 149 HOH HOH A . H 4 HOH 66 152 152 HOH HOH A . H 4 HOH 67 153 153 HOH HOH A . H 4 HOH 68 160 160 HOH HOH A . H 4 HOH 69 161 161 HOH HOH A . H 4 HOH 70 162 162 HOH HOH A . H 4 HOH 71 174 174 HOH HOH A . H 4 HOH 72 177 177 HOH HOH A . H 4 HOH 73 185 185 HOH HOH A . H 4 HOH 74 186 186 HOH HOH A . H 4 HOH 75 190 190 HOH HOH A . H 4 HOH 76 191 191 HOH HOH A . H 4 HOH 77 192 192 HOH HOH A . H 4 HOH 78 193 193 HOH HOH A . H 4 HOH 79 195 195 HOH HOH A . H 4 HOH 80 199 199 HOH HOH A . H 4 HOH 81 201 201 HOH HOH A . H 4 HOH 82 206 206 HOH HOH A . H 4 HOH 83 207 207 HOH HOH A . H 4 HOH 84 208 208 HOH HOH A . H 4 HOH 85 211 211 HOH HOH A . H 4 HOH 86 215 215 HOH HOH A . H 4 HOH 87 217 217 HOH HOH A . H 4 HOH 88 218 218 HOH HOH A . H 4 HOH 89 219 219 HOH HOH A . H 4 HOH 90 220 220 HOH HOH A . H 4 HOH 91 222 222 HOH HOH A . H 4 HOH 92 223 223 HOH HOH A . H 4 HOH 93 226 226 HOH HOH A . H 4 HOH 94 227 227 HOH HOH A . H 4 HOH 95 230 230 HOH HOH A . H 4 HOH 96 232 232 HOH HOH A . H 4 HOH 97 233 233 HOH HOH A . H 4 HOH 98 235 235 HOH HOH A . H 4 HOH 99 237 237 HOH HOH A . H 4 HOH 100 239 239 HOH HOH A . H 4 HOH 101 240 240 HOH HOH A . H 4 HOH 102 241 241 HOH HOH A . H 4 HOH 103 242 242 HOH HOH A . H 4 HOH 104 243 243 HOH HOH A . H 4 HOH 105 244 244 HOH HOH A . H 4 HOH 106 246 246 HOH HOH A . H 4 HOH 107 247 247 HOH HOH A . H 4 HOH 108 248 248 HOH HOH A . H 4 HOH 109 249 249 HOH HOH A . H 4 HOH 110 250 250 HOH HOH A . H 4 HOH 111 251 251 HOH HOH A . H 4 HOH 112 252 252 HOH HOH A . H 4 HOH 113 253 253 HOH HOH A . I 4 HOH 1 11 11 HOH HOH B . I 4 HOH 2 12 12 HOH HOH B . I 4 HOH 3 17 17 HOH HOH B . I 4 HOH 4 21 21 HOH HOH B . I 4 HOH 5 27 27 HOH HOH B . I 4 HOH 6 28 28 HOH HOH B . I 4 HOH 7 29 29 HOH HOH B . I 4 HOH 8 30 30 HOH HOH B . I 4 HOH 9 31 31 HOH HOH B . I 4 HOH 10 33 33 HOH HOH B . I 4 HOH 11 36 36 HOH HOH B . I 4 HOH 12 37 37 HOH HOH B . I 4 HOH 13 39 39 HOH HOH B . I 4 HOH 14 40 40 HOH HOH B . I 4 HOH 15 42 42 HOH HOH B . I 4 HOH 16 43 43 HOH HOH B . I 4 HOH 17 44 44 HOH HOH B . I 4 HOH 18 45 45 HOH HOH B . I 4 HOH 19 47 47 HOH HOH B . I 4 HOH 20 53 53 HOH HOH B . I 4 HOH 21 54 54 HOH HOH B . I 4 HOH 22 55 55 HOH HOH B . I 4 HOH 23 56 56 HOH HOH B . I 4 HOH 24 57 57 HOH HOH B . I 4 HOH 25 64 64 HOH HOH B . I 4 HOH 26 65 65 HOH HOH B . I 4 HOH 27 67 67 HOH HOH B . I 4 HOH 28 68 68 HOH HOH B . I 4 HOH 29 69 69 HOH HOH B . I 4 HOH 30 71 71 HOH HOH B . I 4 HOH 31 72 72 HOH HOH B . I 4 HOH 32 78 78 HOH HOH B . I 4 HOH 33 79 79 HOH HOH B . I 4 HOH 34 80 80 HOH HOH B . I 4 HOH 35 83 83 HOH HOH B . I 4 HOH 36 84 84 HOH HOH B . I 4 HOH 37 85 85 HOH HOH B . I 4 HOH 38 86 86 HOH HOH B . I 4 HOH 39 87 87 HOH HOH B . I 4 HOH 40 91 91 HOH HOH B . I 4 HOH 41 92 92 HOH HOH B . I 4 HOH 42 95 95 HOH HOH B . I 4 HOH 43 97 97 HOH HOH B . I 4 HOH 44 98 98 HOH HOH B . I 4 HOH 45 101 101 HOH HOH B . I 4 HOH 46 102 102 HOH HOH B . I 4 HOH 47 103 103 HOH HOH B . I 4 HOH 48 106 106 HOH HOH B . I 4 HOH 49 107 107 HOH HOH B . I 4 HOH 50 108 108 HOH HOH B . I 4 HOH 51 111 111 HOH HOH B . I 4 HOH 52 112 112 HOH HOH B . I 4 HOH 53 114 114 HOH HOH B . I 4 HOH 54 115 115 HOH HOH B . I 4 HOH 55 116 116 HOH HOH B . I 4 HOH 56 120 120 HOH HOH B . I 4 HOH 57 125 125 HOH HOH B . I 4 HOH 58 127 127 HOH HOH B . I 4 HOH 59 129 129 HOH HOH B . I 4 HOH 60 130 130 HOH HOH B . I 4 HOH 61 131 131 HOH HOH B . I 4 HOH 62 132 132 HOH HOH B . I 4 HOH 63 134 134 HOH HOH B . I 4 HOH 64 137 137 HOH HOH B . I 4 HOH 65 138 138 HOH HOH B . I 4 HOH 66 139 139 HOH HOH B . I 4 HOH 67 140 140 HOH HOH B . I 4 HOH 68 142 142 HOH HOH B . I 4 HOH 69 143 143 HOH HOH B . I 4 HOH 70 144 144 HOH HOH B . I 4 HOH 71 145 145 HOH HOH B . I 4 HOH 72 146 146 HOH HOH B . I 4 HOH 73 148 148 HOH HOH B . I 4 HOH 74 150 150 HOH HOH B . I 4 HOH 75 151 151 HOH HOH B . I 4 HOH 76 154 154 HOH HOH B . I 4 HOH 77 155 155 HOH HOH B . I 4 HOH 78 156 156 HOH HOH B . I 4 HOH 79 157 157 HOH HOH B . I 4 HOH 80 158 158 HOH HOH B . I 4 HOH 81 159 159 HOH HOH B . I 4 HOH 82 163 163 HOH HOH B . I 4 HOH 83 164 164 HOH HOH B . I 4 HOH 84 165 165 HOH HOH B . I 4 HOH 85 166 166 HOH HOH B . I 4 HOH 86 167 167 HOH HOH B . I 4 HOH 87 168 168 HOH HOH B . I 4 HOH 88 169 169 HOH HOH B . I 4 HOH 89 170 170 HOH HOH B . I 4 HOH 90 171 171 HOH HOH B . I 4 HOH 91 172 172 HOH HOH B . I 4 HOH 92 173 173 HOH HOH B . I 4 HOH 93 175 175 HOH HOH B . I 4 HOH 94 176 176 HOH HOH B . I 4 HOH 95 178 178 HOH HOH B . I 4 HOH 96 179 179 HOH HOH B . I 4 HOH 97 180 180 HOH HOH B . I 4 HOH 98 181 181 HOH HOH B . I 4 HOH 99 182 182 HOH HOH B . I 4 HOH 100 184 184 HOH HOH B . I 4 HOH 101 187 187 HOH HOH B . I 4 HOH 102 188 188 HOH HOH B . I 4 HOH 103 189 189 HOH HOH B . I 4 HOH 104 194 194 HOH HOH B . I 4 HOH 105 196 196 HOH HOH B . I 4 HOH 106 197 197 HOH HOH B . I 4 HOH 107 198 198 HOH HOH B . I 4 HOH 108 200 200 HOH HOH B . I 4 HOH 109 202 202 HOH HOH B . I 4 HOH 110 203 203 HOH HOH B . I 4 HOH 111 204 204 HOH HOH B . I 4 HOH 112 205 205 HOH HOH B . I 4 HOH 113 210 210 HOH HOH B . I 4 HOH 114 212 212 HOH HOH B . I 4 HOH 115 213 213 HOH HOH B . I 4 HOH 116 221 221 HOH HOH B . I 4 HOH 117 224 224 HOH HOH B . I 4 HOH 118 228 228 HOH HOH B . I 4 HOH 119 229 229 HOH HOH B . I 4 HOH 120 234 234 HOH HOH B . I 4 HOH 121 236 236 HOH HOH B . I 4 HOH 122 238 238 HOH HOH B . I 4 HOH 123 245 245 HOH HOH B . I 4 HOH 124 254 254 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 SHELXS phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 3OMJ _cell.length_a 39.831 _cell.length_b 39.831 _cell.length_c 84.567 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3OMJ _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3OMJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_percent_sol 51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '23% MPD, 35mM calcium acetate, 10mM Tris, pH 7.5, equilibrated against 35% MPD, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2008-08-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.82654 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.82654 # _reflns.entry_id 3OMJ _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 23.44 _reflns.d_resolution_high 0.95 _reflns.number_obs 41893 _reflns.number_all 42494 _reflns.percent_possible_obs 97.7 _reflns.pdbx_Rmerge_I_obs 0.090 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 0.95 1.00 99.6 ? ? ? ? ? ? ? ? ? ? ? 1 3.00 23.44 89.0 ? ? ? ? ? ? ? ? ? ? ? 2 # _refine.entry_id 3OMJ _refine.ls_number_reflns_obs 41893 _refine.ls_number_reflns_all 43176 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.44 _refine.ls_d_res_high 0.95 _refine.ls_percent_reflns_obs 97.03 _refine.ls_R_factor_obs 0.1127 _refine.ls_R_factor_all 0.113 _refine.ls_R_factor_R_work 0.1121 _refine.ls_R_factor_R_free 0.1237 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 2111 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.983 _refine.correlation_coeff_Fo_to_Fc_free 0.982 _refine.B_iso_mean 12.059 _refine.aniso_B[1][1] 0.12 _refine.aniso_B[2][2] 0.12 _refine.aniso_B[3][3] -0.25 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL PARAMETERS FOR MASK CACLULATION' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.017 _refine.overall_SU_ML 0.011 _refine.overall_SU_B 0.428 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 406 _refine_hist.pdbx_number_atoms_ligand 90 _refine_hist.number_atoms_solvent 237 _refine_hist.number_atoms_total 733 _refine_hist.d_res_high 0.95 _refine_hist.d_res_low 23.44 # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 0.954 _refine_ls_shell.d_res_low 0.979 _refine_ls_shell.number_reflns_R_work 2952 _refine_ls_shell.R_factor_R_work 0.258 _refine_ls_shell.percent_reflns_obs 99.52 _refine_ls_shell.R_factor_R_free 0.286 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 149 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3OMJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3OMJ _struct.title 'Structural Basis for Cyclic Py-Im Polyamide Allosteric Inhibition of Nuclear Receptor Binding' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3OMJ _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'cyclic Py-Im polyamide, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 4 ? I N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3OMJ _struct_ref.pdbx_db_accession 3OMJ _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code CCAGTACTGG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3OMJ A 1 ? 10 ? 3OMJ 1 ? 10 ? 1 10 2 1 3OMJ B 1 ? 10 ? 3OMJ 1 ? 10 ? 1 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2750 ? 1 MORE -7 ? 1 'SSA (A^2)' 3720 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 1 "O3'" ? ? ? 1_555 A C38 2 P ? ? A DC 1 A C38 2 1_555 ? ? ? ? ? ? ? 1.584 ? ? covale2 covale one ? A C38 2 "O3'" ? ? ? 1_555 A DA 3 P A ? A C38 2 A DA 3 1_555 ? ? ? ? ? ? ? 1.572 ? ? covale3 covale one ? A C38 2 "O3'" ? ? ? 1_555 A DA 3 P B ? A C38 2 A DA 3 1_555 ? ? ? ? ? ? ? 1.786 ? ? covale4 covale both ? B DC 1 "O3'" ? ? ? 1_555 B C38 2 P ? ? B DC 1 B C38 2 1_555 ? ? ? ? ? ? ? 1.567 ? ? covale5 covale one ? B C38 2 "O3'" ? ? ? 1_555 B DA 3 P ? ? B C38 2 B DA 3 1_555 ? ? ? ? ? ? ? 1.579 ? ? metalc1 metalc ? ? H HOH . O ? ? ? 1_555 D CA . CA A ? A HOH 32 A CA 300 1_555 ? ? ? ? ? ? ? 2.323 ? ? metalc2 metalc ? ? H HOH . O ? ? ? 1_555 E CA . CA B ? A HOH 32 A CA 301 1_555 ? ? ? ? ? ? ? 2.334 ? ? metalc3 metalc ? ? H HOH . O ? ? ? 1_555 D CA . CA A ? A HOH 34 A CA 300 1_555 ? ? ? ? ? ? ? 2.539 ? ? metalc4 metalc ? ? H HOH . O ? ? ? 1_555 E CA . CA B ? A HOH 34 A CA 301 1_555 ? ? ? ? ? ? ? 2.233 ? ? metalc5 metalc ? ? H HOH . O ? ? ? 1_555 E CA . CA B ? A HOH 41 A CA 301 1_555 ? ? ? ? ? ? ? 2.494 ? ? metalc6 metalc ? ? H HOH . O A ? ? 1_555 D CA . CA A ? A HOH 73 A CA 300 1_555 ? ? ? ? ? ? ? 2.759 ? ? metalc7 metalc ? ? H HOH . O ? ? ? 1_555 C CA . CA ? ? A HOH 124 A CA 302 1_555 ? ? ? ? ? ? ? 2.429 ? ? metalc8 metalc ? ? H HOH . O ? ? ? 1_555 D CA . CA A ? A HOH 133 A CA 300 1_555 ? ? ? ? ? ? ? 2.720 ? ? metalc9 metalc ? ? H HOH . O ? ? ? 1_555 E CA . CA B ? A HOH 133 A CA 301 1_555 ? ? ? ? ? ? ? 2.287 ? ? metalc10 metalc ? ? H HOH . O A ? ? 1_555 D CA . CA A ? A HOH 161 A CA 300 1_555 ? ? ? ? ? ? ? 2.168 ? ? metalc11 metalc ? ? H HOH . O B ? ? 1_555 E CA . CA B ? A HOH 161 A CA 301 1_555 ? ? ? ? ? ? ? 2.425 ? ? metalc12 metalc ? ? H HOH . O ? ? ? 1_555 C CA . CA ? ? A HOH 246 A CA 302 1_555 ? ? ? ? ? ? ? 2.393 ? ? metalc13 metalc ? ? H HOH . O ? ? ? 1_555 C CA . CA ? ? A HOH 247 A CA 302 1_555 ? ? ? ? ? ? ? 2.365 ? ? metalc14 metalc ? ? H HOH . O ? ? ? 1_555 C CA . CA ? ? A HOH 252 A CA 302 1_555 ? ? ? ? ? ? ? 2.438 ? ? metalc15 metalc ? ? H HOH . O ? ? ? 1_555 C CA . CA ? ? A HOH 253 A CA 302 1_555 ? ? ? ? ? ? ? 2.425 ? ? metalc16 metalc ? ? C CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 302 B HOH 125 1_555 ? ? ? ? ? ? ? 2.444 ? ? metalc17 metalc ? ? C CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 302 B HOH 245 1_555 ? ? ? ? ? ? ? 2.449 ? ? metalc18 metalc ? ? B C38 2 O1P ? ? ? 1_555 G CA . CA ? ? B C38 2 B CA 303 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc19 metalc ? ? I HOH . O ? ? ? 1_555 G CA . CA ? ? B HOH 45 B CA 303 1_555 ? ? ? ? ? ? ? 2.301 ? ? metalc20 metalc ? ? I HOH . O ? ? ? 1_555 G CA . CA ? ? B HOH 85 B CA 303 1_555 ? ? ? ? ? ? ? 2.355 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C38 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A C38 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C38 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A C38 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C38 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A C38 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 8 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 8 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B C38 2 N3 ? ? A DG 9 B C38 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B C38 2 O2 ? ? A DG 9 B C38 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B C38 2 N4 ? ? A DG 9 B C38 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? H HOH . ? A HOH 32 ? 1_555 CA A D CA . ? A CA 300 ? 1_555 O ? H HOH . ? A HOH 34 ? 1_555 91.0 ? 2 O ? H HOH . ? A HOH 32 ? 1_555 CA A D CA . ? A CA 300 ? 1_555 O A H HOH . ? A HOH 73 ? 1_555 134.8 ? 3 O ? H HOH . ? A HOH 34 ? 1_555 CA A D CA . ? A CA 300 ? 1_555 O A H HOH . ? A HOH 73 ? 1_555 70.9 ? 4 O ? H HOH . ? A HOH 32 ? 1_555 CA A D CA . ? A CA 300 ? 1_555 O ? H HOH . ? A HOH 133 ? 1_555 75.2 ? 5 O ? H HOH . ? A HOH 34 ? 1_555 CA A D CA . ? A CA 300 ? 1_555 O ? H HOH . ? A HOH 133 ? 1_555 118.1 ? 6 O A H HOH . ? A HOH 73 ? 1_555 CA A D CA . ? A CA 300 ? 1_555 O ? H HOH . ? A HOH 133 ? 1_555 77.8 ? 7 O ? H HOH . ? A HOH 32 ? 1_555 CA A D CA . ? A CA 300 ? 1_555 O A H HOH . ? A HOH 161 ? 1_555 61.1 ? 8 O ? H HOH . ? A HOH 34 ? 1_555 CA A D CA . ? A CA 300 ? 1_555 O A H HOH . ? A HOH 161 ? 1_555 142.9 ? 9 O A H HOH . ? A HOH 73 ? 1_555 CA A D CA . ? A CA 300 ? 1_555 O A H HOH . ? A HOH 161 ? 1_555 146.1 ? 10 O ? H HOH . ? A HOH 133 ? 1_555 CA A D CA . ? A CA 300 ? 1_555 O A H HOH . ? A HOH 161 ? 1_555 80.1 ? 11 O ? H HOH . ? A HOH 32 ? 1_555 CA B E CA . ? A CA 301 ? 1_555 O ? H HOH . ? A HOH 34 ? 1_555 98.9 ? 12 O ? H HOH . ? A HOH 32 ? 1_555 CA B E CA . ? A CA 301 ? 1_555 O ? H HOH . ? A HOH 41 ? 1_555 83.3 ? 13 O ? H HOH . ? A HOH 34 ? 1_555 CA B E CA . ? A CA 301 ? 1_555 O ? H HOH . ? A HOH 41 ? 1_555 92.0 ? 14 O ? H HOH . ? A HOH 32 ? 1_555 CA B E CA . ? A CA 301 ? 1_555 O ? H HOH . ? A HOH 133 ? 1_555 84.1 ? 15 O ? H HOH . ? A HOH 34 ? 1_555 CA B E CA . ? A CA 301 ? 1_555 O ? H HOH . ? A HOH 133 ? 1_555 173.2 ? 16 O ? H HOH . ? A HOH 41 ? 1_555 CA B E CA . ? A CA 301 ? 1_555 O ? H HOH . ? A HOH 133 ? 1_555 82.3 ? 17 O ? H HOH . ? A HOH 32 ? 1_555 CA B E CA . ? A CA 301 ? 1_555 O B H HOH . ? A HOH 161 ? 1_555 81.6 ? 18 O ? H HOH . ? A HOH 34 ? 1_555 CA B E CA . ? A CA 301 ? 1_555 O B H HOH . ? A HOH 161 ? 1_555 84.2 ? 19 O ? H HOH . ? A HOH 41 ? 1_555 CA B E CA . ? A CA 301 ? 1_555 O B H HOH . ? A HOH 161 ? 1_555 163.6 ? 20 O ? H HOH . ? A HOH 133 ? 1_555 CA B E CA . ? A CA 301 ? 1_555 O B H HOH . ? A HOH 161 ? 1_555 102.3 ? 21 O ? H HOH . ? A HOH 124 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? H HOH . ? A HOH 246 ? 1_555 77.7 ? 22 O ? H HOH . ? A HOH 124 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? H HOH . ? A HOH 247 ? 1_555 120.7 ? 23 O ? H HOH . ? A HOH 246 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? H HOH . ? A HOH 247 ? 1_555 84.0 ? 24 O ? H HOH . ? A HOH 124 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? H HOH . ? A HOH 252 ? 1_555 78.4 ? 25 O ? H HOH . ? A HOH 246 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? H HOH . ? A HOH 252 ? 1_555 85.0 ? 26 O ? H HOH . ? A HOH 247 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? H HOH . ? A HOH 252 ? 1_555 155.1 ? 27 O ? H HOH . ? A HOH 124 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? H HOH . ? A HOH 253 ? 1_555 73.3 ? 28 O ? H HOH . ? A HOH 246 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? H HOH . ? A HOH 253 ? 1_555 127.5 ? 29 O ? H HOH . ? A HOH 247 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? H HOH . ? A HOH 253 ? 1_555 75.0 ? 30 O ? H HOH . ? A HOH 252 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? H HOH . ? A HOH 253 ? 1_555 128.8 ? 31 O ? H HOH . ? A HOH 124 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? I HOH . ? B HOH 125 ? 1_555 114.1 ? 32 O ? H HOH . ? A HOH 246 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? I HOH . ? B HOH 125 ? 1_555 157.4 ? 33 O ? H HOH . ? A HOH 247 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? I HOH . ? B HOH 125 ? 1_555 104.0 ? 34 O ? H HOH . ? A HOH 252 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? I HOH . ? B HOH 125 ? 1_555 79.0 ? 35 O ? H HOH . ? A HOH 253 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? I HOH . ? B HOH 125 ? 1_555 75.1 ? 36 O ? H HOH . ? A HOH 124 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? I HOH . ? B HOH 245 ? 1_555 151.2 ? 37 O ? H HOH . ? A HOH 246 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? I HOH . ? B HOH 245 ? 1_555 81.6 ? 38 O ? H HOH . ? A HOH 247 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? I HOH . ? B HOH 245 ? 1_555 76.1 ? 39 O ? H HOH . ? A HOH 252 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? I HOH . ? B HOH 245 ? 1_555 80.2 ? 40 O ? H HOH . ? A HOH 253 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? I HOH . ? B HOH 245 ? 1_555 135.5 ? 41 O ? I HOH . ? B HOH 125 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? I HOH . ? B HOH 245 ? 1_555 80.0 ? 42 O1P ? B C38 2 ? B C38 2 ? 1_555 CA ? G CA . ? B CA 303 ? 1_555 O ? I HOH . ? B HOH 45 ? 1_555 85.1 ? 43 O1P ? B C38 2 ? B C38 2 ? 1_555 CA ? G CA . ? B CA 303 ? 1_555 O ? I HOH . ? B HOH 85 ? 1_555 173.4 ? 44 O ? I HOH . ? B HOH 45 ? 1_555 CA ? G CA . ? B CA 303 ? 1_555 O ? I HOH . ? B HOH 85 ? 1_555 88.8 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 302 ? 7 'BINDING SITE FOR RESIDUE CA A 302' AC2 Software A CA 300 ? 6 'BINDING SITE FOR RESIDUE CA A 300' AC3 Software A CA 301 ? 7 'BINDING SITE FOR RESIDUE CA A 301' AC4 Software B 1P2 500 ? 39 'BINDING SITE FOR RESIDUE 1P2 B 500' AC5 Software B CA 303 ? 6 'BINDING SITE FOR RESIDUE CA B 303' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH H . ? HOH A 124 . ? 1_555 ? 2 AC1 7 HOH H . ? HOH A 246 . ? 1_555 ? 3 AC1 7 HOH H . ? HOH A 247 . ? 1_555 ? 4 AC1 7 HOH H . ? HOH A 252 . ? 1_555 ? 5 AC1 7 HOH H . ? HOH A 253 . ? 1_555 ? 6 AC1 7 HOH I . ? HOH B 125 . ? 1_555 ? 7 AC1 7 HOH I . ? HOH B 245 . ? 1_555 ? 8 AC2 6 HOH H . ? HOH A 32 . ? 1_555 ? 9 AC2 6 HOH H . ? HOH A 34 . ? 1_555 ? 10 AC2 6 HOH H . ? HOH A 73 . ? 1_555 ? 11 AC2 6 HOH H . ? HOH A 74 . ? 1_555 ? 12 AC2 6 HOH H . ? HOH A 133 . ? 1_555 ? 13 AC2 6 HOH H . ? HOH A 161 . ? 1_555 ? 14 AC3 7 HOH H . ? HOH A 32 . ? 1_555 ? 15 AC3 7 HOH H . ? HOH A 34 . ? 1_555 ? 16 AC3 7 HOH H . ? HOH A 41 . ? 1_555 ? 17 AC3 7 HOH H . ? HOH A 73 . ? 1_555 ? 18 AC3 7 HOH H . ? HOH A 74 . ? 1_555 ? 19 AC3 7 HOH H . ? HOH A 133 . ? 1_555 ? 20 AC3 7 HOH H . ? HOH A 161 . ? 1_555 ? 21 AC4 39 DC A 1 ? DC A 1 . ? 4_454 ? 22 AC4 39 DG A 4 ? DG A 4 . ? 1_555 ? 23 AC4 39 DT A 5 ? DT A 5 . ? 1_555 ? 24 AC4 39 DA A 6 ? DA A 6 . ? 1_555 ? 25 AC4 39 DC A 7 ? DC A 7 . ? 1_555 ? 26 AC4 39 DT A 8 ? DT A 8 . ? 1_555 ? 27 AC4 39 DG A 9 ? DG A 9 . ? 1_555 ? 28 AC4 39 HOH H . ? HOH A 160 . ? 1_555 ? 29 AC4 39 HOH H . ? HOH A 242 . ? 4_454 ? 30 AC4 39 DC B 1 ? DC B 1 . ? 3_555 ? 31 AC4 39 DG B 4 ? DG B 4 . ? 1_555 ? 32 AC4 39 DT B 5 ? DT B 5 . ? 1_555 ? 33 AC4 39 DA B 6 ? DA B 6 . ? 1_555 ? 34 AC4 39 DC B 7 ? DC B 7 . ? 1_555 ? 35 AC4 39 DT B 8 ? DT B 8 . ? 1_555 ? 36 AC4 39 DG B 9 ? DG B 9 . ? 1_555 ? 37 AC4 39 DG B 10 ? DG B 10 . ? 6_454 ? 38 AC4 39 HOH I . ? HOH B 31 . ? 1_555 ? 39 AC4 39 HOH I . ? HOH B 39 . ? 1_555 ? 40 AC4 39 HOH I . ? HOH B 40 . ? 1_555 ? 41 AC4 39 HOH I . ? HOH B 47 . ? 1_555 ? 42 AC4 39 HOH I . ? HOH B 53 . ? 1_555 ? 43 AC4 39 HOH I . ? HOH B 56 . ? 1_555 ? 44 AC4 39 HOH I . ? HOH B 86 . ? 1_555 ? 45 AC4 39 HOH I . ? HOH B 87 . ? 1_555 ? 46 AC4 39 HOH I . ? HOH B 102 . ? 1_555 ? 47 AC4 39 HOH I . ? HOH B 129 . ? 1_555 ? 48 AC4 39 HOH I . ? HOH B 137 . ? 1_555 ? 49 AC4 39 HOH I . ? HOH B 138 . ? 1_555 ? 50 AC4 39 HOH I . ? HOH B 146 . ? 1_555 ? 51 AC4 39 HOH I . ? HOH B 159 . ? 1_555 ? 52 AC4 39 HOH I . ? HOH B 169 . ? 1_555 ? 53 AC4 39 HOH I . ? HOH B 170 . ? 1_555 ? 54 AC4 39 HOH I . ? HOH B 176 . ? 1_555 ? 55 AC4 39 HOH I . ? HOH B 182 . ? 1_555 ? 56 AC4 39 HOH I . ? HOH B 198 . ? 1_555 ? 57 AC4 39 HOH I . ? HOH B 200 . ? 1_555 ? 58 AC4 39 HOH I . ? HOH B 203 . ? 1_555 ? 59 AC4 39 HOH I . ? HOH B 204 . ? 1_555 ? 60 AC5 6 C38 B 2 ? C38 B 2 . ? 1_555 ? 61 AC5 6 C38 B 2 ? C38 B 2 . ? 8_664 ? 62 AC5 6 HOH I . ? HOH B 45 . ? 8_664 ? 63 AC5 6 HOH I . ? HOH B 45 . ? 1_555 ? 64 AC5 6 HOH I . ? HOH B 85 . ? 1_555 ? 65 AC5 6 HOH I . ? HOH B 85 . ? 8_664 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O6 A DG 10 ? ? O A HOH 240 ? ? 1.73 2 1 "O5'" A DC 1 ? ? O A HOH 242 ? ? 1.82 3 1 O A HOH 100 ? ? O A HOH 242 ? ? 1.88 4 1 O A HOH 239 ? ? O A HOH 243 ? ? 2.02 5 1 N7 A DG 10 ? ? O A HOH 240 ? ? 2.07 6 1 OP2 B DG 10 ? A O B HOH 42 ? ? 2.09 7 1 O B HOH 198 ? ? O B HOH 234 ? ? 2.12 8 1 O B HOH 178 ? ? O B HOH 224 ? ? 2.15 9 1 C6 A DG 10 ? ? O A HOH 240 ? ? 2.15 10 1 OP1 A DT 5 ? A O A HOH 152 ? ? 2.16 11 1 O A HOH 239 ? ? O A HOH 240 ? ? 2.18 12 1 O B HOH 114 ? ? O B HOH 224 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 162 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 224 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 6_464 _pdbx_validate_symm_contact.dist 1.92 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A C38 2 ? ? P A DA 3 ? B 1.786 1.607 0.179 0.012 Y 2 1 "C5'" A DA 3 ? B "C4'" A DA 3 ? ? 1.572 1.512 0.060 0.007 N 3 1 "C5'" A DG 4 ? A "C4'" A DG 4 ? ? 1.557 1.512 0.045 0.007 N 4 1 "O3'" A DG 4 ? A P A DT 5 ? A 1.515 1.607 -0.092 0.012 Y 5 1 "O3'" A DG 4 ? B P A DT 5 ? B 1.517 1.607 -0.090 0.012 Y 6 1 "O3'" A DC 7 ? A "C3'" A DC 7 ? ? 1.640 1.435 0.205 0.013 N 7 1 "O3'" A DC 7 ? B "C3'" A DC 7 ? ? 1.280 1.419 -0.139 0.006 N 8 1 "C5'" A DT 8 ? B "C4'" A DT 8 ? ? 1.555 1.512 0.043 0.007 N 9 1 "O3'" B DG 4 ? A "C3'" B DG 4 ? ? 1.649 1.435 0.214 0.013 N 10 1 "O3'" B DG 4 ? B "C3'" B DG 4 ? ? 1.374 1.419 -0.045 0.006 N 11 1 "C5'" B DT 5 ? B "C4'" B DT 5 ? ? 1.573 1.512 0.061 0.007 N 12 1 "C5'" B DG 9 ? B "C4'" B DG 9 ? ? 1.572 1.512 0.060 0.007 N 13 1 "O3'" B DG 9 ? A "C3'" B DG 9 ? ? 1.302 1.419 -0.117 0.006 N 14 1 "O3'" B DG 9 ? B "C3'" B DG 9 ? ? 1.566 1.435 0.131 0.013 N 15 1 C8 B DG 9 ? ? N9 B DG 9 ? ? 1.298 1.374 -0.076 0.007 N 16 1 "C5'" B DG 10 ? A "C4'" B DG 10 ? ? 1.423 1.509 -0.086 0.011 N 17 1 "C5'" B DG 10 ? B "C4'" B DG 10 ? ? 1.605 1.512 0.093 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A C38 2 ? ? "O3'" A C38 2 ? ? P A DA 3 ? B 104.23 119.70 -15.47 1.20 Y 2 1 "O3'" A C38 2 ? ? P A DA 3 ? B OP2 A DA 3 ? B 122.45 110.50 11.95 1.10 Y 3 1 "C5'" A DA 3 ? B "C4'" A DA 3 ? ? "C3'" A DA 3 ? ? 103.23 114.10 -10.87 1.80 N 4 1 "C3'" A DA 3 ? ? "O3'" A DA 3 ? ? P A DG 4 ? B 129.00 119.70 9.30 1.20 Y 5 1 "O5'" A DG 4 ? B "C5'" A DG 4 ? B "C4'" A DG 4 ? ? 99.41 109.40 -9.99 0.80 N 6 1 "C5'" A DG 4 ? B "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 131.02 115.70 15.32 1.20 N 7 1 "C3'" A DG 4 ? ? "O3'" A DG 4 ? B P A DT 5 ? B 131.42 119.70 11.72 1.20 Y 8 1 "O5'" A DT 5 ? A "C5'" A DT 5 ? A "C4'" A DT 5 ? ? 104.47 109.40 -4.93 0.80 N 9 1 "C5'" A DT 5 ? A "C4'" A DT 5 ? ? "C3'" A DT 5 ? ? 124.35 115.70 8.65 1.20 N 10 1 "C3'" A DC 7 ? ? "O3'" A DC 7 ? B P A DT 8 ? B 127.88 119.70 8.18 1.20 Y 11 1 "O4'" B DC 1 ? ? "C4'" B DC 1 ? ? "C3'" B DC 1 ? ? 100.90 104.50 -3.60 0.40 N 12 1 "O4'" B DA 3 ? ? "C1'" B DA 3 ? ? N9 B DA 3 ? ? 112.97 108.30 4.67 0.30 N 13 1 "C4'" B DG 4 ? ? "C3'" B DG 4 ? ? "O3'" B DG 4 ? A 91.33 109.70 -18.37 2.50 N 14 1 "C4'" B DG 4 ? ? "C3'" B DG 4 ? ? "O3'" B DG 4 ? B 126.59 112.30 14.29 2.00 N 15 1 "C3'" B DG 4 ? ? "O3'" B DG 4 ? B P B DT 5 ? B 137.21 119.70 17.51 1.20 Y 16 1 "O5'" B DT 5 ? A "C5'" B DT 5 ? A "C4'" B DT 5 ? ? 102.28 109.40 -7.12 0.80 N 17 1 "C5'" B DT 5 ? A "C4'" B DT 5 ? ? "C3'" B DT 5 ? ? 126.53 115.70 10.83 1.20 N 18 1 "C1'" B DT 8 ? ? "O4'" B DT 8 ? ? "C4'" B DT 8 ? ? 104.02 110.10 -6.08 1.00 N 19 1 "C3'" B DT 8 ? ? "O3'" B DT 8 ? ? P B DG 9 ? A 132.42 119.70 12.72 1.20 Y 20 1 "O3'" B DT 8 ? ? P B DG 9 ? B OP2 B DG 9 ? B 118.46 110.50 7.96 1.10 Y 21 1 "O5'" B DG 9 ? A "C5'" B DG 9 ? A "C4'" B DG 9 ? ? 101.46 109.40 -7.94 0.80 N 22 1 C5 B DG 9 ? ? N7 B DG 9 ? ? C8 B DG 9 ? ? 100.61 104.30 -3.69 0.50 N 23 1 N7 B DG 9 ? ? C8 B DG 9 ? ? N9 B DG 9 ? ? 116.64 113.10 3.54 0.50 N 24 1 "O5'" B DG 10 ? B "C5'" B DG 10 ? B "C4'" B DG 10 ? ? 99.87 109.40 -9.53 0.80 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 1 ? ? 0.088 'SIDE CHAIN' 2 1 DG A 4 ? A 0.081 'SIDE CHAIN' 3 1 DT A 5 ? A 0.083 'SIDE CHAIN' 4 1 DC B 1 ? ? 0.105 'SIDE CHAIN' 5 1 DG B 4 ? ? 0.079 'SIDE CHAIN' 6 1 DT B 5 ? A 0.082 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A C38 2 A C38 2 ? DC ? 2 B C38 2 B C38 2 ? DC ? # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id CA _pdbx_struct_special_symmetry.auth_seq_id 303 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id CA _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1P2 C C N N 1 1P2 N N N N 2 1P2 O O N N 3 1P2 C1 C Y N 4 1P2 N1 N Y N 5 1P2 O1 O N N 6 1P2 C2 C Y N 7 1P2 N2 N N N 8 1P2 O2 O N N 9 1P2 C3 C Y N 10 1P2 N3 N Y N 11 1P2 O3 O N N 12 1P2 C4 C N N 13 1P2 N4 N N N 14 1P2 O4 O N N 15 1P2 C5 C Y N 16 1P2 N5 N Y N 17 1P2 O5 O N N 18 1P2 C6 C N N 19 1P2 O6 O N N 20 1P2 C7 C Y N 21 1P2 N7 N N N 22 1P2 O7 O N N 23 1P2 C8 C Y N 24 1P2 N8 N Y N 25 1P2 O8 O N N 26 1P2 C9 C N N 27 1P2 N9 N Y N 28 1P2 O9 O N N 29 1P2 C10 C Y N 30 1P2 N10 N N N 31 1P2 C11 C Y N 32 1P2 N11 N N N 33 1P2 C12 C N N 34 1P2 N12 N N N 35 1P2 C13 C Y N 36 1P2 N13 N Y N 37 1P2 C14 C Y N 38 1P2 N14 N N N 39 1P2 C15 C N N 40 1P2 N15 N Y N 41 1P2 C16 C Y N 42 1P2 N16 N N N 43 1P2 C17 C N N 44 1P2 N17 N Y N 45 1P2 C18 C Y N 46 1P2 C19 C Y N 47 1P2 N19 N N N 48 1P2 C20 C Y N 49 1P2 N20 N Y N 50 1P2 C21 C N N 51 1P2 N21 N Y N 52 1P2 C22 C N N 53 1P2 N22 N N N 54 1P2 C23 C N N 55 1P2 N23 N N N 56 1P2 C24 C N R 57 1P2 C25 C N N 58 1P2 C26 C N N 59 1P2 C27 C Y N 60 1P2 C28 C Y N 61 1P2 C29 C Y N 62 1P2 C30 C N N 63 1P2 C31 C Y N 64 1P2 C32 C N N 65 1P2 C33 C Y N 66 1P2 C34 C Y N 67 1P2 C35 C Y N 68 1P2 C36 C N N 69 1P2 C37 C Y N 70 1P2 C38 C N N 71 1P2 C39 C Y N 72 1P2 C40 C Y N 73 1P2 C41 C N N 74 1P2 C42 C Y N 75 1P2 C43 C N N 76 1P2 C44 C Y N 77 1P2 C45 C Y N 78 1P2 C46 C Y N 79 1P2 C47 C N N 80 1P2 C48 C N N 81 1P2 C49 C N N 82 1P2 C50 C N R 83 1P2 C51 C N N 84 1P2 C60 C Y N 85 1P2 C61 C Y N 86 1P2 HN H N N 87 1P2 H2 H N N 88 1P2 HN2 H N N 89 1P2 H3 H N N 90 1P2 H4 H N N 91 1P2 H4A H N N 92 1P2 H4B H N N 93 1P2 HN4 H N N 94 1P2 HN7 H N N 95 1P2 H8 H N N 96 1P2 H9 H N N 97 1P2 H9A H N N 98 1P2 H9B H N N 99 1P2 HN10 H N N 100 1P2 H11 H N N 101 1P2 HN11 H N N 102 1P2 HN1A H N N 103 1P2 HN12 H N N 104 1P2 H14 H N N 105 1P2 HN14 H N N 106 1P2 H15 H N N 107 1P2 H15A H N N 108 1P2 H15B H N N 109 1P2 HN16 H N N 110 1P2 HN19 H N N 111 1P2 H20 H N N 112 1P2 H21 H N N 113 1P2 H21A H N N 114 1P2 H21B H N N 115 1P2 HN22 H N N 116 1P2 H23 H N N 117 1P2 H23A H N N 118 1P2 HN23 H N N 119 1P2 HN2A H N N 120 1P2 H24 H N N 121 1P2 H25 H N N 122 1P2 H25A H N N 123 1P2 H28 H N N 124 1P2 H29 H N N 125 1P2 H30 H N N 126 1P2 H30A H N N 127 1P2 H30B H N N 128 1P2 H33 H N N 129 1P2 H35 H N N 130 1P2 H36 H N N 131 1P2 H36A H N N 132 1P2 H36B H N N 133 1P2 H40 H N N 134 1P2 H41 H N N 135 1P2 H41A H N N 136 1P2 H41B H N N 137 1P2 H46 H N N 138 1P2 H47 H N N 139 1P2 H47A H N N 140 1P2 H47B H N N 141 1P2 H49 H N N 142 1P2 H49A H N N 143 1P2 H50 H N N 144 1P2 H51 H N N 145 1P2 H51A H N N 146 1P2 H60 H N N 147 1P2 H61 H N N 148 C38 O3P O N N 149 C38 P P N N 150 C38 O1P O N N 151 C38 O2P O N N 152 C38 "O5'" O N N 153 C38 "C5'" C N N 154 C38 "C4'" C N R 155 C38 "O4'" O N N 156 C38 "C3'" C N S 157 C38 "O3'" O N N 158 C38 "C2'" C N N 159 C38 "C1'" C N R 160 C38 N1 N N N 161 C38 C2 C N N 162 C38 O2 O N N 163 C38 N3 N N N 164 C38 C4 C N N 165 C38 N4 N N N 166 C38 C5 C N N 167 C38 C6 C N N 168 C38 I I N N 169 C38 H3P H N N 170 C38 H2P H N N 171 C38 "H5'1" H N N 172 C38 "H5'2" H N N 173 C38 "H4'" H N N 174 C38 "H3'" H N N 175 C38 HA H N N 176 C38 "H2'1" H N N 177 C38 "H2'2" H N N 178 C38 "H1'" H N N 179 C38 H4N1 H N N 180 C38 H4N2 H N N 181 C38 H6 H N N 182 CA CA CA N N 183 DA OP3 O N N 184 DA P P N N 185 DA OP1 O N N 186 DA OP2 O N N 187 DA "O5'" O N N 188 DA "C5'" C N N 189 DA "C4'" C N R 190 DA "O4'" O N N 191 DA "C3'" C N S 192 DA "O3'" O N N 193 DA "C2'" C N N 194 DA "C1'" C N R 195 DA N9 N Y N 196 DA C8 C Y N 197 DA N7 N Y N 198 DA C5 C Y N 199 DA C6 C Y N 200 DA N6 N N N 201 DA N1 N Y N 202 DA C2 C Y N 203 DA N3 N Y N 204 DA C4 C Y N 205 DA HOP3 H N N 206 DA HOP2 H N N 207 DA "H5'" H N N 208 DA "H5''" H N N 209 DA "H4'" H N N 210 DA "H3'" H N N 211 DA "HO3'" H N N 212 DA "H2'" H N N 213 DA "H2''" H N N 214 DA "H1'" H N N 215 DA H8 H N N 216 DA H61 H N N 217 DA H62 H N N 218 DA H2 H N N 219 DC OP3 O N N 220 DC P P N N 221 DC OP1 O N N 222 DC OP2 O N N 223 DC "O5'" O N N 224 DC "C5'" C N N 225 DC "C4'" C N R 226 DC "O4'" O N N 227 DC "C3'" C N S 228 DC "O3'" O N N 229 DC "C2'" C N N 230 DC "C1'" C N R 231 DC N1 N N N 232 DC C2 C N N 233 DC O2 O N N 234 DC N3 N N N 235 DC C4 C N N 236 DC N4 N N N 237 DC C5 C N N 238 DC C6 C N N 239 DC HOP3 H N N 240 DC HOP2 H N N 241 DC "H5'" H N N 242 DC "H5''" H N N 243 DC "H4'" H N N 244 DC "H3'" H N N 245 DC "HO3'" H N N 246 DC "H2'" H N N 247 DC "H2''" H N N 248 DC "H1'" H N N 249 DC H41 H N N 250 DC H42 H N N 251 DC H5 H N N 252 DC H6 H N N 253 DG OP3 O N N 254 DG P P N N 255 DG OP1 O N N 256 DG OP2 O N N 257 DG "O5'" O N N 258 DG "C5'" C N N 259 DG "C4'" C N R 260 DG "O4'" O N N 261 DG "C3'" C N S 262 DG "O3'" O N N 263 DG "C2'" C N N 264 DG "C1'" C N R 265 DG N9 N Y N 266 DG C8 C Y N 267 DG N7 N Y N 268 DG C5 C Y N 269 DG C6 C N N 270 DG O6 O N N 271 DG N1 N N N 272 DG C2 C N N 273 DG N2 N N N 274 DG N3 N N N 275 DG C4 C Y N 276 DG HOP3 H N N 277 DG HOP2 H N N 278 DG "H5'" H N N 279 DG "H5''" H N N 280 DG "H4'" H N N 281 DG "H3'" H N N 282 DG "HO3'" H N N 283 DG "H2'" H N N 284 DG "H2''" H N N 285 DG "H1'" H N N 286 DG H8 H N N 287 DG H1 H N N 288 DG H21 H N N 289 DG H22 H N N 290 DT OP3 O N N 291 DT P P N N 292 DT OP1 O N N 293 DT OP2 O N N 294 DT "O5'" O N N 295 DT "C5'" C N N 296 DT "C4'" C N R 297 DT "O4'" O N N 298 DT "C3'" C N S 299 DT "O3'" O N N 300 DT "C2'" C N N 301 DT "C1'" C N R 302 DT N1 N N N 303 DT C2 C N N 304 DT O2 O N N 305 DT N3 N N N 306 DT C4 C N N 307 DT O4 O N N 308 DT C5 C N N 309 DT C7 C N N 310 DT C6 C N N 311 DT HOP3 H N N 312 DT HOP2 H N N 313 DT "H5'" H N N 314 DT "H5''" H N N 315 DT "H4'" H N N 316 DT "H3'" H N N 317 DT "HO3'" H N N 318 DT "H2'" H N N 319 DT "H2''" H N N 320 DT "H1'" H N N 321 DT H3 H N N 322 DT H71 H N N 323 DT H72 H N N 324 DT H73 H N N 325 DT H6 H N N 326 HOH O O N N 327 HOH H1 H N N 328 HOH H2 H N N 329 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1P2 O C doub N N 1 1P2 C5 C sing N N 2 1P2 C N sing N N 3 1P2 N C25 sing N N 4 1P2 N HN sing N N 5 1P2 C3 C1 doub Y N 6 1P2 C1 N2 sing N N 7 1P2 C1 C2 sing Y N 8 1P2 C4 N1 sing N N 9 1P2 C3 N1 sing Y N 10 1P2 N1 C5 sing Y N 11 1P2 O1 C6 doub N N 12 1P2 C5 C2 doub Y N 13 1P2 C2 H2 sing N N 14 1P2 C6 N2 sing N N 15 1P2 N2 HN2 sing N N 16 1P2 O2 C12 doub N N 17 1P2 C3 H3 sing N N 18 1P2 C9 N3 sing N N 19 1P2 N3 C10 sing Y N 20 1P2 N3 C8 sing Y N 21 1P2 C17 O3 doub N N 22 1P2 C4 H4 sing N N 23 1P2 C4 H4A sing N N 24 1P2 C4 H4B sing N N 25 1P2 C7 N4 sing N N 26 1P2 N4 C12 sing N N 27 1P2 N4 HN4 sing N N 28 1P2 C22 O4 doub N N 29 1P2 C16 N5 sing Y N 30 1P2 N5 C14 sing Y N 31 1P2 N5 C15 sing N N 32 1P2 C26 O5 doub N N 33 1P2 C6 C10 sing N N 34 1P2 C32 O6 doub N N 35 1P2 C8 C7 doub Y N 36 1P2 C11 C7 sing Y N 37 1P2 N7 C13 sing N N 38 1P2 N7 C17 sing N N 39 1P2 N7 HN7 sing N N 40 1P2 C38 O7 doub N N 41 1P2 C8 H8 sing N N 42 1P2 C18 N8 sing Y N 43 1P2 C20 N8 sing Y N 44 1P2 N8 C21 sing N N 45 1P2 O8 C43 doub N N 46 1P2 C9 H9 sing N N 47 1P2 C9 H9A sing N N 48 1P2 C9 H9B sing N N 49 1P2 N9 C19 sing Y N 50 1P2 N9 C18 doub Y N 51 1P2 O9 C48 doub N N 52 1P2 C10 C11 doub Y N 53 1P2 C22 N10 sing N N 54 1P2 N10 C19 sing N N 55 1P2 N10 HN10 sing N N 56 1P2 C11 H11 sing N N 57 1P2 C24 N11 sing N N 58 1P2 N11 HN11 sing N N 59 1P2 N11 HN1A sing N N 60 1P2 C12 C16 sing N N 61 1P2 C51 N12 sing N N 62 1P2 N12 C26 sing N N 63 1P2 N12 HN12 sing N N 64 1P2 C60 C13 sing Y N 65 1P2 C13 C14 doub Y N 66 1P2 C31 N13 sing Y N 67 1P2 N13 C29 sing Y N 68 1P2 N13 C30 sing N N 69 1P2 C14 H14 sing N N 70 1P2 N14 C27 sing N N 71 1P2 N14 C32 sing N N 72 1P2 N14 HN14 sing N N 73 1P2 C15 H15 sing N N 74 1P2 C15 H15A sing N N 75 1P2 C15 H15B sing N N 76 1P2 C37 N15 sing Y N 77 1P2 C35 N15 sing Y N 78 1P2 N15 C36 sing N N 79 1P2 C60 C16 doub Y N 80 1P2 C38 N16 sing N N 81 1P2 N16 C34 sing N N 82 1P2 N16 HN16 sing N N 83 1P2 C18 C17 sing N N 84 1P2 C41 N17 sing N N 85 1P2 C40 N17 sing Y N 86 1P2 N17 C42 sing Y N 87 1P2 C19 C20 doub Y N 88 1P2 C43 N19 sing N N 89 1P2 C39 N19 sing N N 90 1P2 N19 HN19 sing N N 91 1P2 C20 H20 sing N N 92 1P2 C47 N20 sing N N 93 1P2 N20 C46 sing Y N 94 1P2 N20 C44 sing Y N 95 1P2 C21 H21 sing N N 96 1P2 C21 H21A sing N N 97 1P2 C21 H21B sing N N 98 1P2 C44 N21 doub Y N 99 1P2 C45 N21 sing Y N 100 1P2 C49 C22 sing N N 101 1P2 C45 N22 sing N N 102 1P2 N22 C48 sing N N 103 1P2 N22 HN22 sing N N 104 1P2 C48 C23 sing N N 105 1P2 C23 C24 sing N N 106 1P2 C23 H23 sing N N 107 1P2 C23 H23A sing N N 108 1P2 N23 C50 sing N N 109 1P2 N23 HN23 sing N N 110 1P2 N23 HN2A sing N N 111 1P2 C24 C25 sing N N 112 1P2 C24 H24 sing N N 113 1P2 C25 H25 sing N N 114 1P2 C25 H25A sing N N 115 1P2 C26 C31 sing N N 116 1P2 C28 C27 sing Y N 117 1P2 C27 C29 doub Y N 118 1P2 C28 C31 doub Y N 119 1P2 C28 H28 sing N N 120 1P2 C29 H29 sing N N 121 1P2 C30 H30 sing N N 122 1P2 C30 H30A sing N N 123 1P2 C30 H30B sing N N 124 1P2 C37 C32 sing N N 125 1P2 C34 C33 sing Y N 126 1P2 C33 C37 doub Y N 127 1P2 C33 H33 sing N N 128 1P2 C34 C35 doub Y N 129 1P2 C35 H35 sing N N 130 1P2 C36 H36 sing N N 131 1P2 C36 H36A sing N N 132 1P2 C36 H36B sing N N 133 1P2 C42 C38 sing N N 134 1P2 C40 C39 doub Y N 135 1P2 C39 C61 sing Y N 136 1P2 C40 H40 sing N N 137 1P2 C41 H41 sing N N 138 1P2 C41 H41A sing N N 139 1P2 C41 H41B sing N N 140 1P2 C42 C61 doub Y N 141 1P2 C43 C44 sing N N 142 1P2 C46 C45 doub Y N 143 1P2 C46 H46 sing N N 144 1P2 C47 H47 sing N N 145 1P2 C47 H47A sing N N 146 1P2 C47 H47B sing N N 147 1P2 C50 C49 sing N N 148 1P2 C49 H49 sing N N 149 1P2 C49 H49A sing N N 150 1P2 C51 C50 sing N N 151 1P2 C50 H50 sing N N 152 1P2 C51 H51 sing N N 153 1P2 C51 H51A sing N N 154 1P2 C60 H60 sing N N 155 1P2 C61 H61 sing N N 156 C38 O3P P sing N N 157 C38 O3P H3P sing N N 158 C38 P O1P doub N N 159 C38 P O2P sing N N 160 C38 P "O5'" sing N N 161 C38 O2P H2P sing N N 162 C38 "O5'" "C5'" sing N N 163 C38 "C5'" "C4'" sing N N 164 C38 "C5'" "H5'1" sing N N 165 C38 "C5'" "H5'2" sing N N 166 C38 "C4'" "O4'" sing N N 167 C38 "C4'" "C3'" sing N N 168 C38 "C4'" "H4'" sing N N 169 C38 "O4'" "C1'" sing N N 170 C38 "C3'" "O3'" sing N N 171 C38 "C3'" "C2'" sing N N 172 C38 "C3'" "H3'" sing N N 173 C38 "O3'" HA sing N N 174 C38 "C2'" "C1'" sing N N 175 C38 "C2'" "H2'1" sing N N 176 C38 "C2'" "H2'2" sing N N 177 C38 "C1'" N1 sing N N 178 C38 "C1'" "H1'" sing N N 179 C38 N1 C2 sing N N 180 C38 N1 C6 sing N N 181 C38 C2 O2 doub N N 182 C38 C2 N3 sing N N 183 C38 N3 C4 doub N N 184 C38 C4 N4 sing N N 185 C38 C4 C5 sing N N 186 C38 N4 H4N1 sing N N 187 C38 N4 H4N2 sing N N 188 C38 C5 C6 doub N N 189 C38 C5 I sing N N 190 C38 C6 H6 sing N N 191 DA OP3 P sing N N 192 DA OP3 HOP3 sing N N 193 DA P OP1 doub N N 194 DA P OP2 sing N N 195 DA P "O5'" sing N N 196 DA OP2 HOP2 sing N N 197 DA "O5'" "C5'" sing N N 198 DA "C5'" "C4'" sing N N 199 DA "C5'" "H5'" sing N N 200 DA "C5'" "H5''" sing N N 201 DA "C4'" "O4'" sing N N 202 DA "C4'" "C3'" sing N N 203 DA "C4'" "H4'" sing N N 204 DA "O4'" "C1'" sing N N 205 DA "C3'" "O3'" sing N N 206 DA "C3'" "C2'" sing N N 207 DA "C3'" "H3'" sing N N 208 DA "O3'" "HO3'" sing N N 209 DA "C2'" "C1'" sing N N 210 DA "C2'" "H2'" sing N N 211 DA "C2'" "H2''" sing N N 212 DA "C1'" N9 sing N N 213 DA "C1'" "H1'" sing N N 214 DA N9 C8 sing Y N 215 DA N9 C4 sing Y N 216 DA C8 N7 doub Y N 217 DA C8 H8 sing N N 218 DA N7 C5 sing Y N 219 DA C5 C6 sing Y N 220 DA C5 C4 doub Y N 221 DA C6 N6 sing N N 222 DA C6 N1 doub Y N 223 DA N6 H61 sing N N 224 DA N6 H62 sing N N 225 DA N1 C2 sing Y N 226 DA C2 N3 doub Y N 227 DA C2 H2 sing N N 228 DA N3 C4 sing Y N 229 DC OP3 P sing N N 230 DC OP3 HOP3 sing N N 231 DC P OP1 doub N N 232 DC P OP2 sing N N 233 DC P "O5'" sing N N 234 DC OP2 HOP2 sing N N 235 DC "O5'" "C5'" sing N N 236 DC "C5'" "C4'" sing N N 237 DC "C5'" "H5'" sing N N 238 DC "C5'" "H5''" sing N N 239 DC "C4'" "O4'" sing N N 240 DC "C4'" "C3'" sing N N 241 DC "C4'" "H4'" sing N N 242 DC "O4'" "C1'" sing N N 243 DC "C3'" "O3'" sing N N 244 DC "C3'" "C2'" sing N N 245 DC "C3'" "H3'" sing N N 246 DC "O3'" "HO3'" sing N N 247 DC "C2'" "C1'" sing N N 248 DC "C2'" "H2'" sing N N 249 DC "C2'" "H2''" sing N N 250 DC "C1'" N1 sing N N 251 DC "C1'" "H1'" sing N N 252 DC N1 C2 sing N N 253 DC N1 C6 sing N N 254 DC C2 O2 doub N N 255 DC C2 N3 sing N N 256 DC N3 C4 doub N N 257 DC C4 N4 sing N N 258 DC C4 C5 sing N N 259 DC N4 H41 sing N N 260 DC N4 H42 sing N N 261 DC C5 C6 doub N N 262 DC C5 H5 sing N N 263 DC C6 H6 sing N N 264 DG OP3 P sing N N 265 DG OP3 HOP3 sing N N 266 DG P OP1 doub N N 267 DG P OP2 sing N N 268 DG P "O5'" sing N N 269 DG OP2 HOP2 sing N N 270 DG "O5'" "C5'" sing N N 271 DG "C5'" "C4'" sing N N 272 DG "C5'" "H5'" sing N N 273 DG "C5'" "H5''" sing N N 274 DG "C4'" "O4'" sing N N 275 DG "C4'" "C3'" sing N N 276 DG "C4'" "H4'" sing N N 277 DG "O4'" "C1'" sing N N 278 DG "C3'" "O3'" sing N N 279 DG "C3'" "C2'" sing N N 280 DG "C3'" "H3'" sing N N 281 DG "O3'" "HO3'" sing N N 282 DG "C2'" "C1'" sing N N 283 DG "C2'" "H2'" sing N N 284 DG "C2'" "H2''" sing N N 285 DG "C1'" N9 sing N N 286 DG "C1'" "H1'" sing N N 287 DG N9 C8 sing Y N 288 DG N9 C4 sing Y N 289 DG C8 N7 doub Y N 290 DG C8 H8 sing N N 291 DG N7 C5 sing Y N 292 DG C5 C6 sing N N 293 DG C5 C4 doub Y N 294 DG C6 O6 doub N N 295 DG C6 N1 sing N N 296 DG N1 C2 sing N N 297 DG N1 H1 sing N N 298 DG C2 N2 sing N N 299 DG C2 N3 doub N N 300 DG N2 H21 sing N N 301 DG N2 H22 sing N N 302 DG N3 C4 sing N N 303 DT OP3 P sing N N 304 DT OP3 HOP3 sing N N 305 DT P OP1 doub N N 306 DT P OP2 sing N N 307 DT P "O5'" sing N N 308 DT OP2 HOP2 sing N N 309 DT "O5'" "C5'" sing N N 310 DT "C5'" "C4'" sing N N 311 DT "C5'" "H5'" sing N N 312 DT "C5'" "H5''" sing N N 313 DT "C4'" "O4'" sing N N 314 DT "C4'" "C3'" sing N N 315 DT "C4'" "H4'" sing N N 316 DT "O4'" "C1'" sing N N 317 DT "C3'" "O3'" sing N N 318 DT "C3'" "C2'" sing N N 319 DT "C3'" "H3'" sing N N 320 DT "O3'" "HO3'" sing N N 321 DT "C2'" "C1'" sing N N 322 DT "C2'" "H2'" sing N N 323 DT "C2'" "H2''" sing N N 324 DT "C1'" N1 sing N N 325 DT "C1'" "H1'" sing N N 326 DT N1 C2 sing N N 327 DT N1 C6 sing N N 328 DT C2 O2 doub N N 329 DT C2 N3 sing N N 330 DT N3 C4 sing N N 331 DT N3 H3 sing N N 332 DT C4 O4 doub N N 333 DT C4 C5 sing N N 334 DT C5 C7 sing N N 335 DT C5 C6 doub N N 336 DT C7 H71 sing N N 337 DT C7 H72 sing N N 338 DT C7 H73 sing N N 339 DT C6 H6 sing N N 340 HOH O H1 sing N N 341 HOH O H2 sing N N 342 # _ndb_struct_conf_na.entry_id 3OMJ _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.148 -0.140 0.274 -10.588 -16.868 0.678 1 A_DC1:DG10_B A 1 ? B 10 ? 19 1 1 A C38 2 1_555 B DG 9 1_555 0.186 -0.097 -0.016 -7.076 -6.312 1.706 2 A_C382:DG9_B A 2 ? B 9 ? 19 1 1 A DA 3 1_555 B DT 8 1_555 0.128 -0.106 -0.097 6.150 -10.920 3.835 3 A_DA3:DT8_B A 3 ? B 8 ? 20 1 1 A DG 4 1_555 B DC 7 1_555 -0.119 -0.073 0.089 -2.231 -4.045 -0.784 4 A_DG4:DC7_B A 4 ? B 7 ? 19 1 1 A DT 5 1_555 B DA 6 1_555 -0.130 -0.098 -0.025 0.367 -14.693 -4.867 5 A_DT5:DA6_B A 5 ? B 6 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 0.132 -0.094 0.038 1.174 -16.258 -4.883 6 A_DA6:DT5_B A 6 ? B 5 ? 20 1 1 A DC 7 1_555 B DG 4 1_555 0.120 -0.099 0.092 2.390 -4.657 -1.098 7 A_DC7:DG4_B A 7 ? B 4 ? 19 1 1 A DT 8 1_555 B DA 3 1_555 -0.095 -0.128 -0.135 -2.932 -7.957 3.784 8 A_DT8:DA3_B A 8 ? B 3 ? 20 1 1 A DG 9 1_555 B C38 2 1_555 -0.160 -0.044 0.073 16.582 -5.000 0.866 9 A_DG9:C382_B A 9 ? B 2 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 -0.165 -0.103 0.607 22.996 -17.052 -0.148 10 A_DG10:DC1_B A 10 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A C38 2 1_555 B DG 9 1_555 -0.067 -0.122 3.279 5.806 7.696 33.677 -1.361 0.984 3.122 12.958 -9.775 34.991 1 AA_DC1C382:DG9DG10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A C38 2 1_555 B DG 9 1_555 A DA 3 1_555 B DT 8 1_555 0.447 0.859 3.159 0.739 8.793 30.232 -0.069 -0.685 3.283 16.425 -1.381 31.465 2 AA_C382DA3:DT8DG9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A DA 3 1_555 B DT 8 1_555 A DG 4 1_555 B DC 7 1_555 -1.721 0.255 3.386 -8.440 11.191 35.164 -1.209 1.450 3.606 17.680 13.334 37.773 3 AA_DA3DG4:DC7DT8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A DG 4 1_555 B DC 7 1_555 A DT 5 1_555 B DA 6 1_555 -0.737 -0.150 3.202 0.184 2.852 32.126 -0.765 1.359 3.173 5.142 -0.332 32.250 4 AA_DG4DT5:DA6DC7_BB A 4 ? B 7 ? A 5 ? B 6 ? 1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 -0.043 0.903 3.276 -0.164 7.231 35.926 0.415 0.046 3.389 11.578 0.263 36.623 5 AA_DT5DA6:DT5DA6_BB A 5 ? B 6 ? A 6 ? B 5 ? 1 A DA 6 1_555 B DT 5 1_555 A DC 7 1_555 B DG 4 1_555 0.783 -0.208 3.237 0.403 2.471 32.039 -0.813 -1.344 3.222 4.468 -0.729 32.134 6 AA_DA6DC7:DG4DT5_BB A 6 ? B 5 ? A 7 ? B 4 ? 1 A DC 7 1_555 B DG 4 1_555 A DT 8 1_555 B DA 3 1_555 1.752 0.281 3.331 7.944 10.589 35.324 -1.065 -1.590 3.566 16.742 -12.561 37.649 7 AA_DC7DT8:DA3DG4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A DT 8 1_555 B DA 3 1_555 A DG 9 1_555 B C38 2 1_555 -0.796 1.292 3.057 0.636 9.571 29.677 0.589 1.603 3.288 18.101 -1.203 31.155 8 AA_DT8DG9:C382DA3_BB A 8 ? B 3 ? A 9 ? B 2 ? 1 A DG 9 1_555 B C38 2 1_555 A DG 10 1_555 B DC 1 1_555 0.344 0.135 3.188 -5.676 3.579 32.641 -0.342 -1.516 3.083 6.285 9.967 33.306 9 AA_DG9DG10:DC1C382_BB A 9 ? B 2 ? A 10 ? B 1 ? # _atom_sites.entry_id 3OMJ _atom_sites.fract_transf_matrix[1][1] 0.025106 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025106 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011825 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA I N O P # loop_