data_3ONA # _entry.id 3ONA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3ONA pdb_00003ona 10.2210/pdb3ona/pdb RCSB RCSB061330 ? ? WWPDB D_1000061330 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-08-17 2 'Structure model' 1 1 2013-06-26 3 'Structure model' 1 2 2023-11-01 4 'Structure model' 1 3 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 4 'Structure model' pdbx_entry_details 7 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ONA _pdbx_database_status.recvd_initial_deposition_date 2010-08-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3ON9 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wang, X.Q.' 1 'Xue, X.G.' 2 'Wang, D.L.' 3 # _citation.id primary _citation.title 'Structural basis of chemokine sequestration by CrmD, a poxvirus-encoded tumor necrosis factor receptor' _citation.journal_abbrev 'Plos Pathog.' _citation.journal_volume 7 _citation.page_first e1002162 _citation.page_last e1002162 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1553-7366 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21829356 _citation.pdbx_database_id_DOI 10.1371/journal.ppat.1002162 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xue, X.G.' 1 ? primary 'Lu, Q.Y.' 2 ? primary 'Wei, H.' 3 ? primary 'Wang, D.L.' 4 ? primary 'Chen, D.W.' 5 ? primary 'He, G.J.' 6 ? primary 'Huang, L.' 7 ? primary 'Wang, H.Z.' 8 ? primary 'Wang, X.Q.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tumour necrosis factor receptor' 18012.010 1 ? ? 'SECRET domain, UNP residues 162-320' ? 2 polymer man 'CX3CL1 protein' 8971.408 1 ? ? 'chemokine domain, UNP residues 24-100' ? 3 water nat water 18.015 28 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name CX3CL1 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GAMGSFNSIDVEINMYPVNKTSCNSSIGSSSTISTSELTITLTHEDCTPVFIGDYYSVVDKLATSGFFTNDKVHQDLTTQ CKINLEIKCNSGRESRQLTPTTKVYLMPHSETVTVVGDCLSNLDVYIVYANTDAIYSDMDVVAYHTSYILNVDHIPPNDC ERD ; ;GAMGSFNSIDVEINMYPVNKTSCNSSIGSSSTISTSELTITLTHEDCTPVFIGDYYSVVDKLATSGFFTNDKVHQDLTTQ CKINLEIKCNSGRESRQLTPTTKVYLMPHSETVTVVGDCLSNLDVYIVYANTDAIYSDMDVVAYHTSYILNVDHIPPNDC ERD ; A ? 2 'polypeptide(L)' no no GAMGQHHGVTKCNITCSKMTSKIPVALLIHYQQNQASCGKRAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAALTRNG GAMGQHHGVTKCNITCSKMTSKIPVALLIHYQQNQASCGKRAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAALTRNG B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 GLY n 1 5 SER n 1 6 PHE n 1 7 ASN n 1 8 SER n 1 9 ILE n 1 10 ASP n 1 11 VAL n 1 12 GLU n 1 13 ILE n 1 14 ASN n 1 15 MET n 1 16 TYR n 1 17 PRO n 1 18 VAL n 1 19 ASN n 1 20 LYS n 1 21 THR n 1 22 SER n 1 23 CYS n 1 24 ASN n 1 25 SER n 1 26 SER n 1 27 ILE n 1 28 GLY n 1 29 SER n 1 30 SER n 1 31 SER n 1 32 THR n 1 33 ILE n 1 34 SER n 1 35 THR n 1 36 SER n 1 37 GLU n 1 38 LEU n 1 39 THR n 1 40 ILE n 1 41 THR n 1 42 LEU n 1 43 THR n 1 44 HIS n 1 45 GLU n 1 46 ASP n 1 47 CYS n 1 48 THR n 1 49 PRO n 1 50 VAL n 1 51 PHE n 1 52 ILE n 1 53 GLY n 1 54 ASP n 1 55 TYR n 1 56 TYR n 1 57 SER n 1 58 VAL n 1 59 VAL n 1 60 ASP n 1 61 LYS n 1 62 LEU n 1 63 ALA n 1 64 THR n 1 65 SER n 1 66 GLY n 1 67 PHE n 1 68 PHE n 1 69 THR n 1 70 ASN n 1 71 ASP n 1 72 LYS n 1 73 VAL n 1 74 HIS n 1 75 GLN n 1 76 ASP n 1 77 LEU n 1 78 THR n 1 79 THR n 1 80 GLN n 1 81 CYS n 1 82 LYS n 1 83 ILE n 1 84 ASN n 1 85 LEU n 1 86 GLU n 1 87 ILE n 1 88 LYS n 1 89 CYS n 1 90 ASN n 1 91 SER n 1 92 GLY n 1 93 ARG n 1 94 GLU n 1 95 SER n 1 96 ARG n 1 97 GLN n 1 98 LEU n 1 99 THR n 1 100 PRO n 1 101 THR n 1 102 THR n 1 103 LYS n 1 104 VAL n 1 105 TYR n 1 106 LEU n 1 107 MET n 1 108 PRO n 1 109 HIS n 1 110 SER n 1 111 GLU n 1 112 THR n 1 113 VAL n 1 114 THR n 1 115 VAL n 1 116 VAL n 1 117 GLY n 1 118 ASP n 1 119 CYS n 1 120 LEU n 1 121 SER n 1 122 ASN n 1 123 LEU n 1 124 ASP n 1 125 VAL n 1 126 TYR n 1 127 ILE n 1 128 VAL n 1 129 TYR n 1 130 ALA n 1 131 ASN n 1 132 THR n 1 133 ASP n 1 134 ALA n 1 135 ILE n 1 136 TYR n 1 137 SER n 1 138 ASP n 1 139 MET n 1 140 ASP n 1 141 VAL n 1 142 VAL n 1 143 ALA n 1 144 TYR n 1 145 HIS n 1 146 THR n 1 147 SER n 1 148 TYR n 1 149 ILE n 1 150 LEU n 1 151 ASN n 1 152 VAL n 1 153 ASP n 1 154 HIS n 1 155 ILE n 1 156 PRO n 1 157 PRO n 1 158 ASN n 1 159 ASP n 1 160 CYS n 1 161 GLU n 1 162 ARG n 1 163 ASP n 2 1 GLY n 2 2 ALA n 2 3 MET n 2 4 GLY n 2 5 GLN n 2 6 HIS n 2 7 HIS n 2 8 GLY n 2 9 VAL n 2 10 THR n 2 11 LYS n 2 12 CYS n 2 13 ASN n 2 14 ILE n 2 15 THR n 2 16 CYS n 2 17 SER n 2 18 LYS n 2 19 MET n 2 20 THR n 2 21 SER n 2 22 LYS n 2 23 ILE n 2 24 PRO n 2 25 VAL n 2 26 ALA n 2 27 LEU n 2 28 LEU n 2 29 ILE n 2 30 HIS n 2 31 TYR n 2 32 GLN n 2 33 GLN n 2 34 ASN n 2 35 GLN n 2 36 ALA n 2 37 SER n 2 38 CYS n 2 39 GLY n 2 40 LYS n 2 41 ARG n 2 42 ALA n 2 43 ILE n 2 44 ILE n 2 45 LEU n 2 46 GLU n 2 47 THR n 2 48 ARG n 2 49 GLN n 2 50 HIS n 2 51 ARG n 2 52 LEU n 2 53 PHE n 2 54 CYS n 2 55 ALA n 2 56 ASP n 2 57 PRO n 2 58 LYS n 2 59 GLU n 2 60 GLN n 2 61 TRP n 2 62 VAL n 2 63 LYS n 2 64 ASP n 2 65 ALA n 2 66 MET n 2 67 GLN n 2 68 HIS n 2 69 LEU n 2 70 ASP n 2 71 ARG n 2 72 GLN n 2 73 ALA n 2 74 ALA n 2 75 ALA n 2 76 LEU n 2 77 THR n 2 78 ARG n 2 79 ASN n 2 80 GLY n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? ? crmD ? ? ? ? ? ? 'Ectromelia virus' 12643 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? plasmid ? ? ? ? ? ? 2 1 sample ? ? ? human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? plasmid ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 158 ? ? ? A . n A 1 2 ALA 2 159 ? ? ? A . n A 1 3 MET 3 160 ? ? ? A . n A 1 4 GLY 4 161 161 GLY GLY A . n A 1 5 SER 5 162 162 SER SER A . n A 1 6 PHE 6 163 163 PHE PHE A . n A 1 7 ASN 7 164 164 ASN ASN A . n A 1 8 SER 8 165 165 SER SER A . n A 1 9 ILE 9 166 166 ILE ILE A . n A 1 10 ASP 10 167 167 ASP ASP A . n A 1 11 VAL 11 168 168 VAL VAL A . n A 1 12 GLU 12 169 169 GLU GLU A . n A 1 13 ILE 13 170 170 ILE ILE A . n A 1 14 ASN 14 171 171 ASN ASN A . n A 1 15 MET 15 172 172 MET MET A . n A 1 16 TYR 16 173 173 TYR TYR A . n A 1 17 PRO 17 174 174 PRO PRO A . n A 1 18 VAL 18 175 175 VAL VAL A . n A 1 19 ASN 19 176 176 ASN ASN A . n A 1 20 LYS 20 177 177 LYS LYS A . n A 1 21 THR 21 178 178 THR THR A . n A 1 22 SER 22 179 179 SER SER A . n A 1 23 CYS 23 180 180 CYS CYS A . n A 1 24 ASN 24 181 181 ASN ASN A . n A 1 25 SER 25 182 182 SER SER A . n A 1 26 SER 26 183 183 SER SER A . n A 1 27 ILE 27 184 184 ILE ILE A . n A 1 28 GLY 28 185 185 GLY GLY A . n A 1 29 SER 29 186 186 SER SER A . n A 1 30 SER 30 187 187 SER SER A . n A 1 31 SER 31 188 188 SER SER A . n A 1 32 THR 32 189 189 THR THR A . n A 1 33 ILE 33 190 190 ILE ILE A . n A 1 34 SER 34 191 191 SER SER A . n A 1 35 THR 35 192 192 THR THR A . n A 1 36 SER 36 193 193 SER SER A . n A 1 37 GLU 37 194 194 GLU GLU A . n A 1 38 LEU 38 195 195 LEU LEU A . n A 1 39 THR 39 196 196 THR THR A . n A 1 40 ILE 40 197 197 ILE ILE A . n A 1 41 THR 41 198 198 THR THR A . n A 1 42 LEU 42 199 199 LEU LEU A . n A 1 43 THR 43 200 200 THR THR A . n A 1 44 HIS 44 201 201 HIS HIS A . n A 1 45 GLU 45 202 202 GLU GLU A . n A 1 46 ASP 46 203 203 ASP ASP A . n A 1 47 CYS 47 204 204 CYS CYS A . n A 1 48 THR 48 205 205 THR THR A . n A 1 49 PRO 49 206 206 PRO PRO A . n A 1 50 VAL 50 207 207 VAL VAL A . n A 1 51 PHE 51 208 208 PHE PHE A . n A 1 52 ILE 52 209 209 ILE ILE A . n A 1 53 GLY 53 210 210 GLY GLY A . n A 1 54 ASP 54 211 211 ASP ASP A . n A 1 55 TYR 55 212 212 TYR TYR A . n A 1 56 TYR 56 213 213 TYR TYR A . n A 1 57 SER 57 214 214 SER SER A . n A 1 58 VAL 58 215 215 VAL VAL A . n A 1 59 VAL 59 216 216 VAL VAL A . n A 1 60 ASP 60 217 217 ASP ASP A . n A 1 61 LYS 61 218 218 LYS LYS A . n A 1 62 LEU 62 219 219 LEU LEU A . n A 1 63 ALA 63 220 220 ALA ALA A . n A 1 64 THR 64 221 221 THR THR A . n A 1 65 SER 65 222 222 SER SER A . n A 1 66 GLY 66 223 223 GLY GLY A . n A 1 67 PHE 67 224 224 PHE PHE A . n A 1 68 PHE 68 225 225 PHE PHE A . n A 1 69 THR 69 226 226 THR THR A . n A 1 70 ASN 70 227 227 ASN ASN A . n A 1 71 ASP 71 228 228 ASP ASP A . n A 1 72 LYS 72 229 229 LYS LYS A . n A 1 73 VAL 73 230 230 VAL VAL A . n A 1 74 HIS 74 231 231 HIS HIS A . n A 1 75 GLN 75 232 232 GLN GLN A . n A 1 76 ASP 76 233 233 ASP ASP A . n A 1 77 LEU 77 234 234 LEU LEU A . n A 1 78 THR 78 235 235 THR THR A . n A 1 79 THR 79 236 236 THR THR A . n A 1 80 GLN 80 237 237 GLN GLN A . n A 1 81 CYS 81 238 238 CYS CYS A . n A 1 82 LYS 82 239 239 LYS LYS A . n A 1 83 ILE 83 240 240 ILE ILE A . n A 1 84 ASN 84 241 241 ASN ASN A . n A 1 85 LEU 85 242 242 LEU LEU A . n A 1 86 GLU 86 243 243 GLU GLU A . n A 1 87 ILE 87 244 244 ILE ILE A . n A 1 88 LYS 88 245 245 LYS LYS A . n A 1 89 CYS 89 246 246 CYS CYS A . n A 1 90 ASN 90 247 247 ASN ASN A . n A 1 91 SER 91 248 248 SER SER A . n A 1 92 GLY 92 249 249 GLY GLY A . n A 1 93 ARG 93 250 250 ARG ARG A . n A 1 94 GLU 94 251 251 GLU GLU A . n A 1 95 SER 95 252 252 SER SER A . n A 1 96 ARG 96 253 253 ARG ARG A . n A 1 97 GLN 97 254 254 GLN GLN A . n A 1 98 LEU 98 255 255 LEU LEU A . n A 1 99 THR 99 256 256 THR THR A . n A 1 100 PRO 100 257 257 PRO PRO A . n A 1 101 THR 101 258 258 THR THR A . n A 1 102 THR 102 259 259 THR THR A . n A 1 103 LYS 103 260 260 LYS LYS A . n A 1 104 VAL 104 261 261 VAL VAL A . n A 1 105 TYR 105 262 262 TYR TYR A . n A 1 106 LEU 106 263 263 LEU LEU A . n A 1 107 MET 107 264 264 MET MET A . n A 1 108 PRO 108 265 265 PRO PRO A . n A 1 109 HIS 109 266 266 HIS HIS A . n A 1 110 SER 110 267 267 SER SER A . n A 1 111 GLU 111 268 268 GLU GLU A . n A 1 112 THR 112 269 269 THR THR A . n A 1 113 VAL 113 270 270 VAL VAL A . n A 1 114 THR 114 271 271 THR THR A . n A 1 115 VAL 115 272 272 VAL VAL A . n A 1 116 VAL 116 273 273 VAL VAL A . n A 1 117 GLY 117 274 274 GLY GLY A . n A 1 118 ASP 118 275 275 ASP ASP A . n A 1 119 CYS 119 276 276 CYS CYS A . n A 1 120 LEU 120 277 277 LEU LEU A . n A 1 121 SER 121 278 278 SER SER A . n A 1 122 ASN 122 279 279 ASN ASN A . n A 1 123 LEU 123 280 280 LEU LEU A . n A 1 124 ASP 124 281 281 ASP ASP A . n A 1 125 VAL 125 282 282 VAL VAL A . n A 1 126 TYR 126 283 283 TYR TYR A . n A 1 127 ILE 127 284 284 ILE ILE A . n A 1 128 VAL 128 285 285 VAL VAL A . n A 1 129 TYR 129 286 286 TYR TYR A . n A 1 130 ALA 130 287 287 ALA ALA A . n A 1 131 ASN 131 288 288 ASN ASN A . n A 1 132 THR 132 289 289 THR THR A . n A 1 133 ASP 133 290 290 ASP ASP A . n A 1 134 ALA 134 291 291 ALA ALA A . n A 1 135 ILE 135 292 292 ILE ILE A . n A 1 136 TYR 136 293 293 TYR TYR A . n A 1 137 SER 137 294 294 SER SER A . n A 1 138 ASP 138 295 295 ASP ASP A . n A 1 139 MET 139 296 296 MET MET A . n A 1 140 ASP 140 297 297 ASP ASP A . n A 1 141 VAL 141 298 298 VAL VAL A . n A 1 142 VAL 142 299 299 VAL VAL A . n A 1 143 ALA 143 300 300 ALA ALA A . n A 1 144 TYR 144 301 301 TYR TYR A . n A 1 145 HIS 145 302 302 HIS HIS A . n A 1 146 THR 146 303 303 THR THR A . n A 1 147 SER 147 304 304 SER SER A . n A 1 148 TYR 148 305 305 TYR TYR A . n A 1 149 ILE 149 306 306 ILE ILE A . n A 1 150 LEU 150 307 307 LEU LEU A . n A 1 151 ASN 151 308 308 ASN ASN A . n A 1 152 VAL 152 309 309 VAL VAL A . n A 1 153 ASP 153 310 310 ASP ASP A . n A 1 154 HIS 154 311 311 HIS HIS A . n A 1 155 ILE 155 312 312 ILE ILE A . n A 1 156 PRO 156 313 313 PRO PRO A . n A 1 157 PRO 157 314 314 PRO PRO A . n A 1 158 ASN 158 315 315 ASN ASN A . n A 1 159 ASP 159 316 316 ASP ASP A . n A 1 160 CYS 160 317 317 CYS CYS A . n A 1 161 GLU 161 318 318 GLU GLU A . n A 1 162 ARG 162 319 ? ? ? A . n A 1 163 ASP 163 320 ? ? ? A . n B 2 1 GLY 1 -3 ? ? ? B . n B 2 2 ALA 2 -2 ? ? ? B . n B 2 3 MET 3 -1 ? ? ? B . n B 2 4 GLY 4 0 ? ? ? B . n B 2 5 GLN 5 1 ? ? ? B . n B 2 6 HIS 6 2 ? ? ? B . n B 2 7 HIS 7 3 ? ? ? B . n B 2 8 GLY 8 4 ? ? ? B . n B 2 9 VAL 9 5 ? ? ? B . n B 2 10 THR 10 6 ? ? ? B . n B 2 11 LYS 11 7 ? ? ? B . n B 2 12 CYS 12 8 8 CYS CYS B . n B 2 13 ASN 13 9 9 ASN ASN B . n B 2 14 ILE 14 10 10 ILE ILE B . n B 2 15 THR 15 11 11 THR THR B . n B 2 16 CYS 16 12 12 CYS CYS B . n B 2 17 SER 17 13 13 SER SER B . n B 2 18 LYS 18 14 14 LYS LYS B . n B 2 19 MET 19 15 15 MET MET B . n B 2 20 THR 20 16 16 THR THR B . n B 2 21 SER 21 17 17 SER SER B . n B 2 22 LYS 22 18 18 LYS LYS B . n B 2 23 ILE 23 19 19 ILE ILE B . n B 2 24 PRO 24 20 20 PRO PRO B . n B 2 25 VAL 25 21 21 VAL VAL B . n B 2 26 ALA 26 22 22 ALA ALA B . n B 2 27 LEU 27 23 23 LEU LEU B . n B 2 28 LEU 28 24 24 LEU LEU B . n B 2 29 ILE 29 25 25 ILE ILE B . n B 2 30 HIS 30 26 26 HIS HIS B . n B 2 31 TYR 31 27 27 TYR TYR B . n B 2 32 GLN 32 28 28 GLN GLN B . n B 2 33 GLN 33 29 29 GLN GLN B . n B 2 34 ASN 34 30 30 ASN ASN B . n B 2 35 GLN 35 31 31 GLN GLN B . n B 2 36 ALA 36 32 32 ALA ALA B . n B 2 37 SER 37 33 33 SER SER B . n B 2 38 CYS 38 34 34 CYS CYS B . n B 2 39 GLY 39 35 35 GLY GLY B . n B 2 40 LYS 40 36 36 LYS LYS B . n B 2 41 ARG 41 37 37 ARG ARG B . n B 2 42 ALA 42 38 38 ALA ALA B . n B 2 43 ILE 43 39 39 ILE ILE B . n B 2 44 ILE 44 40 40 ILE ILE B . n B 2 45 LEU 45 41 41 LEU LEU B . n B 2 46 GLU 46 42 42 GLU GLU B . n B 2 47 THR 47 43 43 THR THR B . n B 2 48 ARG 48 44 44 ARG ARG B . n B 2 49 GLN 49 45 45 GLN GLN B . n B 2 50 HIS 50 46 46 HIS HIS B . n B 2 51 ARG 51 47 47 ARG ARG B . n B 2 52 LEU 52 48 48 LEU LEU B . n B 2 53 PHE 53 49 49 PHE PHE B . n B 2 54 CYS 54 50 50 CYS CYS B . n B 2 55 ALA 55 51 51 ALA ALA B . n B 2 56 ASP 56 52 52 ASP ASP B . n B 2 57 PRO 57 53 53 PRO PRO B . n B 2 58 LYS 58 54 54 LYS LYS B . n B 2 59 GLU 59 55 55 GLU GLU B . n B 2 60 GLN 60 56 56 GLN GLN B . n B 2 61 TRP 61 57 57 TRP TRP B . n B 2 62 VAL 62 58 58 VAL VAL B . n B 2 63 LYS 63 59 59 LYS LYS B . n B 2 64 ASP 64 60 60 ASP ASP B . n B 2 65 ALA 65 61 61 ALA ALA B . n B 2 66 MET 66 62 62 MET MET B . n B 2 67 GLN 67 63 63 GLN GLN B . n B 2 68 HIS 68 64 64 HIS HIS B . n B 2 69 LEU 69 65 65 LEU LEU B . n B 2 70 ASP 70 66 66 ASP ASP B . n B 2 71 ARG 71 67 67 ARG ARG B . n B 2 72 GLN 72 68 68 GLN GLN B . n B 2 73 ALA 73 69 69 ALA ALA B . n B 2 74 ALA 74 70 70 ALA ALA B . n B 2 75 ALA 75 71 71 ALA ALA B . n B 2 76 LEU 76 72 72 LEU LEU B . n B 2 77 THR 77 73 73 THR THR B . n B 2 78 ARG 78 74 ? ? ? B . n B 2 79 ASN 79 75 ? ? ? B . n B 2 80 GLY 80 76 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 1 1 HOH HOH A . C 3 HOH 2 2 2 HOH HOH A . C 3 HOH 3 3 3 HOH HOH A . C 3 HOH 4 4 4 HOH HOH A . C 3 HOH 5 6 6 HOH HOH A . C 3 HOH 6 9 9 HOH HOH A . C 3 HOH 7 10 10 HOH HOH A . C 3 HOH 8 11 11 HOH HOH A . C 3 HOH 9 12 12 HOH HOH A . C 3 HOH 10 13 13 HOH HOH A . C 3 HOH 11 14 14 HOH HOH A . C 3 HOH 12 15 15 HOH HOH A . C 3 HOH 13 18 18 HOH HOH A . C 3 HOH 14 19 19 HOH HOH A . C 3 HOH 15 21 21 HOH HOH A . C 3 HOH 16 22 22 HOH HOH A . C 3 HOH 17 23 23 HOH HOH A . C 3 HOH 18 24 24 HOH HOH A . C 3 HOH 19 25 25 HOH HOH A . C 3 HOH 20 27 27 HOH HOH A . D 3 HOH 1 77 5 HOH HOH B . D 3 HOH 2 78 7 HOH HOH B . D 3 HOH 3 79 8 HOH HOH B . D 3 HOH 4 80 16 HOH HOH B . D 3 HOH 5 81 17 HOH HOH B . D 3 HOH 6 82 20 HOH HOH B . D 3 HOH 7 83 26 HOH HOH B . D 3 HOH 8 84 28 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine)' ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _cell.entry_id 3ONA _cell.length_a 71.330 _cell.length_b 71.330 _cell.length_c 93.141 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3ONA _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3ONA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.53 _exptl_crystal.density_percent_sol 51.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.2M Li2SO4, 0.1M Tris.Cl, 20% PEG 4000, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2010-03-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.pdbx_synchrotron_site SSRF _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97000 # _reflns.entry_id 3ONA _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.6 _reflns.number_obs 8847 _reflns.number_all 8839 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.69 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3ONA _refine.ls_number_reflns_obs 8262 _refine.ls_number_reflns_all 8847 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.06 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.317 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 93.62 _refine.ls_R_factor_obs 0.1986 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1961 _refine.ls_R_factor_R_free 0.2497 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.76 _refine.ls_number_reflns_R_free 393 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -1.0220 _refine.aniso_B[2][2] -1.0220 _refine.aniso_B[3][3] -17.7540 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.354 _refine.solvent_model_param_bsol 72.036 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRIES 3ON9 AND 1F2L' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 1.79 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1744 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 28 _refine_hist.number_atoms_total 1772 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 29.317 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.010 ? ? 1779 'X-RAY DIFFRACTION' ? f_angle_d 1.282 ? ? 2413 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 18.876 ? ? 634 'X-RAY DIFFRACTION' ? f_chiral_restr 0.076 ? ? 289 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 307 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs 'X-RAY DIFFRACTION' . 2.5974 2.9730 2349 0.2783 85.00 0.3716 . . 113 . . . . 'X-RAY DIFFRACTION' . 2.9730 3.7444 2646 0.2026 96.00 0.2952 . . 135 . . . . 'X-RAY DIFFRACTION' . 3.7444 29.3187 2874 0.1730 99.00 0.2072 . . 145 . . . . # _database_PDB_matrix.entry_id 3ONA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3ONA _struct.title 'The SECRET domain in complex with CX3CL1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ONA _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/CYTOKINE' _struct_keywords.text 'beta-sandwich, chemokine fold, vTNFR-chemokine complex, VIRAL PROTEIN-CYTOKINE complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q7TDW8_9POXV Q7TDW8 1 ;SFNSIDVEINMYPVNKTSCNSSIGSSSTISTSELTITLTHEDCTPVFIGDYYSVVDKLATSGFFTNDKVHQDLTTQCKIN LEIKCNSGRESRQLTPTTKVYLMPHSETVTVVGDCLSNLDVYIVYANTDAIYSDMDVVAYHTSYILNVDHIPPNDCERD ; 162 ? 2 UNP Q6I9S9_HUMAN Q6I9S9 2 GQHHGVTKCNITCSKMTSKIPVALLIHYQQNQASCGKRAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAALTRNG 24 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3ONA A 5 ? 163 ? Q7TDW8 162 ? 320 ? 162 320 2 2 3ONA B 4 ? 80 ? Q6I9S9 24 ? 100 ? 0 76 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3ONA GLY A 1 ? UNP Q7TDW8 ? ? 'expression tag' 158 1 1 3ONA ALA A 2 ? UNP Q7TDW8 ? ? 'expression tag' 159 2 1 3ONA MET A 3 ? UNP Q7TDW8 ? ? 'expression tag' 160 3 1 3ONA GLY A 4 ? UNP Q7TDW8 ? ? 'expression tag' 161 4 2 3ONA GLY B 1 ? UNP Q6I9S9 ? ? 'expression tag' -3 5 2 3ONA ALA B 2 ? UNP Q6I9S9 ? ? 'expression tag' -2 6 2 3ONA MET B 3 ? UNP Q6I9S9 ? ? 'expression tag' -1 7 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1090 ? 1 MORE -4 ? 1 'SSA (A^2)' 11870 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO B 24 ? ALA B 26 ? PRO B 20 ALA B 22 5 ? 3 HELX_P HELX_P2 2 GLU B 59 ? ALA B 74 ? GLU B 55 ALA B 70 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 160 SG ? ? A CYS 180 A CYS 317 1_555 ? ? ? ? ? ? ? 2.048 ? ? disulf2 disulf ? ? A CYS 47 SG ? ? ? 1_555 A CYS 81 SG ? ? A CYS 204 A CYS 238 1_555 ? ? ? ? ? ? ? 2.062 ? ? disulf3 disulf ? ? A CYS 89 SG ? ? ? 1_555 A CYS 119 SG ? ? A CYS 246 A CYS 276 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf4 disulf ? ? B CYS 12 SG ? ? ? 1_555 B CYS 38 SG ? ? B CYS 8 B CYS 34 1_555 ? ? ? ? ? ? ? 2.046 ? ? disulf5 disulf ? ? B CYS 16 SG ? ? ? 1_555 B CYS 54 SG ? ? B CYS 12 B CYS 50 1_555 ? ? ? ? ? ? ? 2.041 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 23 ? CYS A 160 ? CYS A 180 ? 1_555 CYS A 317 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 47 ? CYS A 81 ? CYS A 204 ? 1_555 CYS A 238 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 89 ? CYS A 119 ? CYS A 246 ? 1_555 CYS A 276 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS B 12 ? CYS B 38 ? CYS B 8 ? 1_555 CYS B 34 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS B 16 ? CYS B 54 ? CYS B 12 ? 1_555 CYS B 50 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TYR _struct_mon_prot_cis.label_seq_id 16 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TYR _struct_mon_prot_cis.auth_seq_id 173 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 17 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 174 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.51 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 6 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 51 ? VAL A 59 ? PHE A 208 VAL A 216 A 2 LEU A 62 ? THR A 69 ? LEU A 219 THR A 226 A 3 SER A 8 ? TYR A 16 ? SER A 165 TYR A 173 A 4 ASN A 122 ? ALA A 130 ? ASN A 279 ALA A 287 A 5 MET A 139 ? HIS A 145 ? MET A 296 HIS A 302 B 1 ASN A 24 ? SER A 26 ? ASN A 181 SER A 183 B 2 SER A 31 ? SER A 34 ? SER A 188 SER A 191 B 3 LEU A 38 ? GLU A 45 ? LEU A 195 GLU A 202 B 4 LYS A 82 ? CYS A 89 ? LYS A 239 CYS A 246 B 5 SER A 110 ? VAL A 116 ? SER A 267 VAL A 273 B 6 SER A 95 ? GLN A 97 ? SER A 252 GLN A 254 C 1 LEU B 28 ? GLN B 33 ? LEU B 24 GLN B 29 C 2 ILE B 43 ? THR B 47 ? ILE B 39 THR B 43 C 3 ARG B 51 ? ALA B 55 ? ARG B 47 ALA B 51 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 59 ? N VAL A 216 O LEU A 62 ? O LEU A 219 A 2 3 O SER A 65 ? O SER A 222 N ILE A 13 ? N ILE A 170 A 3 4 N ASP A 10 ? N ASP A 167 O VAL A 128 ? O VAL A 285 A 4 5 N TYR A 129 ? N TYR A 286 O ASP A 140 ? O ASP A 297 B 1 2 N ASN A 24 ? N ASN A 181 O SER A 34 ? O SER A 191 B 2 3 N SER A 31 ? N SER A 188 O LEU A 42 ? O LEU A 199 B 3 4 N THR A 43 ? N THR A 200 O ASN A 84 ? O ASN A 241 B 4 5 N ILE A 87 ? N ILE A 244 O VAL A 116 ? O VAL A 273 B 5 6 O VAL A 115 ? O VAL A 272 N ARG A 96 ? N ARG A 253 C 1 2 N GLN B 32 ? N GLN B 28 O ILE B 44 ? O ILE B 40 C 2 3 N LEU B 45 ? N LEU B 41 O PHE B 53 ? O PHE B 49 # _pdbx_entry_details.entry_id 3ONA _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 192 ? ? -114.71 -169.83 2 1 TYR A 213 ? ? -167.18 119.90 3 1 ASP A 217 ? ? 75.88 -120.64 4 1 ASN A 227 ? ? -77.38 -165.87 5 1 SER A 248 ? ? -110.95 74.74 6 1 ARG A 250 ? ? -155.07 -65.11 7 1 LYS A 260 ? ? 165.11 157.70 8 1 SER A 304 ? ? -179.75 -128.82 9 1 HIS A 311 ? ? 87.39 -15.20 10 1 SER B 13 ? ? -87.97 -99.76 11 1 CYS B 34 ? ? -53.53 -78.84 12 1 ALA B 71 ? ? 90.06 -56.34 13 1 LEU B 72 ? ? -56.93 1.05 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 81 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 19.0029 -12.9567 6.5494 0.6583 0.6687 0.6122 -0.0874 0.0107 -0.0879 2.5016 4.0854 3.6319 0.4653 -0.3641 0.3986 -0.1293 0.2483 0.1148 -0.0680 0.1338 0.3761 -0.2636 -0.8333 0.0000 'X-RAY DIFFRACTION' 2 ? refined 34.9930 -26.7368 -4.2512 0.7071 0.7267 0.6579 -0.0990 -0.0225 0.0337 2.6660 3.5269 2.2269 -0.2411 -1.1254 1.1613 -0.2488 -0.4634 -0.0142 1.1693 0.0966 -0.3473 -0.1196 0.6553 0.0001 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'chain A' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'chain B' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 158 ? A GLY 1 2 1 Y 1 A ALA 159 ? A ALA 2 3 1 Y 1 A MET 160 ? A MET 3 4 1 Y 1 A ARG 319 ? A ARG 162 5 1 Y 1 A ASP 320 ? A ASP 163 6 1 Y 1 B GLY -3 ? B GLY 1 7 1 Y 1 B ALA -2 ? B ALA 2 8 1 Y 1 B MET -1 ? B MET 3 9 1 Y 1 B GLY 0 ? B GLY 4 10 1 Y 1 B GLN 1 ? B GLN 5 11 1 Y 1 B HIS 2 ? B HIS 6 12 1 Y 1 B HIS 3 ? B HIS 7 13 1 Y 1 B GLY 4 ? B GLY 8 14 1 Y 1 B VAL 5 ? B VAL 9 15 1 Y 1 B THR 6 ? B THR 10 16 1 Y 1 B LYS 7 ? B LYS 11 17 1 Y 1 B ARG 74 ? B ARG 78 18 1 Y 1 B ASN 75 ? B ASN 79 19 1 Y 1 B GLY 76 ? B GLY 80 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 3ON9 'PDB ENTRIES 3ON9 AND 1F2L' 2 ? 'experimental model' PDB 1F2L 'PDB ENTRIES 3ON9 AND 1F2L' # _atom_sites.entry_id 3ONA _atom_sites.fract_transf_matrix[1][1] 0.014019 _atom_sites.fract_transf_matrix[1][2] 0.008094 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016188 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010736 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_