data_3ONJ # _entry.id 3ONJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3ONJ RCSB RCSB061339 WWPDB D_1000061339 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3ONK 'yeast Ent3_ENTH domain' unspecified PDB 3ONL 'yeast Ent3_ENTH-Vti1p_Habc complex structure' unspecified # _pdbx_database_status.entry_id 3ONJ _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2010-08-29 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wang, J.' 1 'Fang, P.' 2 'Niu, L.' 3 'Teng, M.' 4 # _citation.id primary _citation.title 'Epsin N-terminal homology domains bind on opposite sides of two SNAREs' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 108 _citation.page_first 12277 _citation.page_last 12282 _citation.year 2011 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21746902 _citation.pdbx_database_id_DOI 10.1073/pnas.1013101108 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Wang, J.' 1 primary 'Gossing, M.' 2 primary 'Fang, P.' 3 primary 'Zimmermann, J.' 4 primary 'Li, X.' 5 primary 'von Mollard, G.F.' 6 primary 'Niu, L.' 7 primary 'Teng, M.' 8 # _cell.length_a 32.112 _cell.length_b 49.751 _cell.length_c 51.690 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3ONJ _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3ONJ _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 't-SNARE VTI1' 10995.161 1 ? ? 'Habc domain, residues 3-99' ? 2 water nat water 18.015 98 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Vesicle transport v-SNARE protein VTI1, Qb-SNARE VTI1, VPS10-interacting protein 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SLLISYESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKT IQSDIKRPLQSLVDSGD ; _entity_poly.pdbx_seq_one_letter_code_can ;SLLISYESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKT IQSDIKRPLQSLVDSGD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LEU n 1 3 LEU n 1 4 ILE n 1 5 SER n 1 6 TYR n 1 7 GLU n 1 8 SER n 1 9 ASP n 1 10 PHE n 1 11 LYS n 1 12 THR n 1 13 THR n 1 14 LEU n 1 15 GLU n 1 16 GLN n 1 17 ALA n 1 18 LYS n 1 19 ALA n 1 20 SER n 1 21 LEU n 1 22 ALA n 1 23 GLU n 1 24 ALA n 1 25 PRO n 1 26 SER n 1 27 GLN n 1 28 PRO n 1 29 LEU n 1 30 SER n 1 31 GLN n 1 32 ARG n 1 33 ASN n 1 34 THR n 1 35 THR n 1 36 LEU n 1 37 LYS n 1 38 HIS n 1 39 VAL n 1 40 GLU n 1 41 GLN n 1 42 GLN n 1 43 GLN n 1 44 ASP n 1 45 GLU n 1 46 LEU n 1 47 PHE n 1 48 ASP n 1 49 LEU n 1 50 LEU n 1 51 ASP n 1 52 GLN n 1 53 MET n 1 54 ASP n 1 55 VAL n 1 56 GLU n 1 57 VAL n 1 58 ASN n 1 59 ASN n 1 60 SER n 1 61 ILE n 1 62 GLY n 1 63 ASP n 1 64 ALA n 1 65 SER n 1 66 GLU n 1 67 ARG n 1 68 ALA n 1 69 THR n 1 70 TYR n 1 71 LYS n 1 72 ALA n 1 73 LYS n 1 74 LEU n 1 75 ARG n 1 76 GLU n 1 77 TRP n 1 78 LYS n 1 79 LYS n 1 80 THR n 1 81 ILE n 1 82 GLN n 1 83 SER n 1 84 ASP n 1 85 ILE n 1 86 LYS n 1 87 ARG n 1 88 PRO n 1 89 LEU n 1 90 GLN n 1 91 SER n 1 92 LEU n 1 93 VAL n 1 94 ASP n 1 95 SER n 1 96 GLY n 1 97 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name yeast _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Bl21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET22b(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VTI1_YEAST _struct_ref.pdbx_db_accession Q04338 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SLLISYESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKT IQSDIKRPLQSLVDSGD ; _struct_ref.pdbx_align_begin 3 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3ONJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 97 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q04338 _struct_ref_seq.db_align_beg 3 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 99 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 99 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3ONJ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 1.88 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 34.49 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 288.0 _exptl_crystal_grow.pdbx_details '0.2M Ammonium Sulfate, 0.1M Sodium Acetate trihydrate, 25% PEG 4000, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 288.0K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2009-05-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRF _diffrn_source.pdbx_synchrotron_beamline BL17U # _reflns.entry_id 3ONJ _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.92 _reflns.d_resolution_low 50 _reflns.number_all ? _reflns.number_obs 6805 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.92 _reflns_shell.d_res_low 1.95 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 94.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 5.8 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3ONJ _refine.ls_d_res_high 1.9200 _refine.ls_d_res_low 35.8500 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.6600 _refine.ls_number_reflns_obs 6684 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1788 _refine.ls_R_factor_R_work 0.1721 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2403 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.0000 _refine.ls_number_reflns_R_free 669 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 13.5034 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.8000 _refine.aniso_B[2][2] 0.7500 _refine.aniso_B[3][3] -1.5500 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9450 _refine.correlation_coeff_Fo_to_Fc_free 0.9080 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.1800 _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 1vcs' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 49.940 _refine.B_iso_min 3.350 _refine.occupancy_max 1.000 _refine.occupancy_min 0.620 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 752 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 98 _refine_hist.number_atoms_total 850 _refine_hist.d_res_high 1.9200 _refine_hist.d_res_low 35.8500 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 761 0.006 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1030 0.871 1.980 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 96 4.031 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35 36.290 27.143 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 142 11.930 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 2 27.155 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 121 0.057 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 564 0.004 0.021 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 486 2.840 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 783 3.742 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 275 5.037 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 247 7.624 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.9200 _refine_ls_shell.d_res_low 1.9700 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.7900 _refine_ls_shell.number_reflns_R_work 435 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.1870 _refine_ls_shell.R_factor_R_free 0.2370 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 46 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 481 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3ONJ _struct.title 'Crystal structure of yeast Vti1p_Habc domain' _struct.pdbx_descriptor 't-SNARE VTI1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ONJ _struct_keywords.text 'helix, Habc, Protein transport' _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 1 ? ALA A 24 ? SER A 3 ALA A 26 1 ? 24 HELX_P HELX_P2 2 PRO A 25 ? GLN A 27 ? PRO A 27 GLN A 29 5 ? 3 HELX_P HELX_P3 3 PRO A 28 ? ILE A 61 ? PRO A 30 ILE A 63 1 ? 34 HELX_P HELX_P4 4 ASP A 63 ? ILE A 85 ? ASP A 65 ILE A 87 1 ? 23 HELX_P HELX_P5 5 ILE A 85 ? SER A 95 ? ILE A 87 SER A 97 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 3ONJ _atom_sites.fract_transf_matrix[1][1] 0.031141 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020100 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019346 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 3 3 SER SER A . n A 1 2 LEU 2 4 4 LEU LEU A . n A 1 3 LEU 3 5 5 LEU LEU A . n A 1 4 ILE 4 6 6 ILE ILE A . n A 1 5 SER 5 7 7 SER SER A . n A 1 6 TYR 6 8 8 TYR TYR A . n A 1 7 GLU 7 9 9 GLU GLU A . n A 1 8 SER 8 10 10 SER SER A . n A 1 9 ASP 9 11 11 ASP ASP A . n A 1 10 PHE 10 12 12 PHE PHE A . n A 1 11 LYS 11 13 13 LYS LYS A . n A 1 12 THR 12 14 14 THR THR A . n A 1 13 THR 13 15 15 THR THR A . n A 1 14 LEU 14 16 16 LEU LEU A . n A 1 15 GLU 15 17 17 GLU GLU A . n A 1 16 GLN 16 18 18 GLN GLN A . n A 1 17 ALA 17 19 19 ALA ALA A . n A 1 18 LYS 18 20 20 LYS LYS A . n A 1 19 ALA 19 21 21 ALA ALA A . n A 1 20 SER 20 22 22 SER SER A . n A 1 21 LEU 21 23 23 LEU LEU A . n A 1 22 ALA 22 24 24 ALA ALA A . n A 1 23 GLU 23 25 25 GLU GLU A . n A 1 24 ALA 24 26 26 ALA ALA A . n A 1 25 PRO 25 27 27 PRO PRO A . n A 1 26 SER 26 28 28 SER SER A . n A 1 27 GLN 27 29 29 GLN GLN A . n A 1 28 PRO 28 30 30 PRO PRO A . n A 1 29 LEU 29 31 31 LEU LEU A . n A 1 30 SER 30 32 32 SER SER A . n A 1 31 GLN 31 33 33 GLN GLN A . n A 1 32 ARG 32 34 34 ARG ARG A . n A 1 33 ASN 33 35 35 ASN ASN A . n A 1 34 THR 34 36 36 THR THR A . n A 1 35 THR 35 37 37 THR THR A . n A 1 36 LEU 36 38 38 LEU LEU A . n A 1 37 LYS 37 39 39 LYS LYS A . n A 1 38 HIS 38 40 40 HIS HIS A . n A 1 39 VAL 39 41 41 VAL VAL A . n A 1 40 GLU 40 42 42 GLU GLU A . n A 1 41 GLN 41 43 43 GLN GLN A . n A 1 42 GLN 42 44 44 GLN GLN A . n A 1 43 GLN 43 45 45 GLN GLN A . n A 1 44 ASP 44 46 46 ASP ASP A . n A 1 45 GLU 45 47 47 GLU GLU A . n A 1 46 LEU 46 48 48 LEU LEU A . n A 1 47 PHE 47 49 49 PHE PHE A . n A 1 48 ASP 48 50 50 ASP ASP A . n A 1 49 LEU 49 51 51 LEU LEU A . n A 1 50 LEU 50 52 52 LEU LEU A . n A 1 51 ASP 51 53 53 ASP ASP A . n A 1 52 GLN 52 54 54 GLN GLN A . n A 1 53 MET 53 55 55 MET MET A . n A 1 54 ASP 54 56 56 ASP ASP A . n A 1 55 VAL 55 57 57 VAL VAL A . n A 1 56 GLU 56 58 58 GLU GLU A . n A 1 57 VAL 57 59 59 VAL VAL A . n A 1 58 ASN 58 60 60 ASN ASN A . n A 1 59 ASN 59 61 61 ASN ASN A . n A 1 60 SER 60 62 62 SER SER A . n A 1 61 ILE 61 63 63 ILE ILE A . n A 1 62 GLY 62 64 64 GLY GLY A . n A 1 63 ASP 63 65 65 ASP ASP A . n A 1 64 ALA 64 66 66 ALA ALA A . n A 1 65 SER 65 67 67 SER SER A . n A 1 66 GLU 66 68 68 GLU GLU A . n A 1 67 ARG 67 69 69 ARG ARG A . n A 1 68 ALA 68 70 70 ALA ALA A . n A 1 69 THR 69 71 71 THR THR A . n A 1 70 TYR 70 72 72 TYR TYR A . n A 1 71 LYS 71 73 73 LYS LYS A . n A 1 72 ALA 72 74 74 ALA ALA A . n A 1 73 LYS 73 75 75 LYS LYS A . n A 1 74 LEU 74 76 76 LEU LEU A . n A 1 75 ARG 75 77 77 ARG ARG A . n A 1 76 GLU 76 78 78 GLU GLU A . n A 1 77 TRP 77 79 79 TRP TRP A . n A 1 78 LYS 78 80 80 LYS LYS A . n A 1 79 LYS 79 81 81 LYS LYS A . n A 1 80 THR 80 82 82 THR THR A . n A 1 81 ILE 81 83 83 ILE ILE A . n A 1 82 GLN 82 84 84 GLN GLN A . n A 1 83 SER 83 85 85 SER SER A . n A 1 84 ASP 84 86 86 ASP ASP A . n A 1 85 ILE 85 87 87 ILE ILE A . n A 1 86 LYS 86 88 88 LYS LYS A . n A 1 87 ARG 87 89 89 ARG ARG A . n A 1 88 PRO 88 90 90 PRO PRO A . n A 1 89 LEU 89 91 91 LEU LEU A . n A 1 90 GLN 90 92 92 GLN GLN A . n A 1 91 SER 91 93 93 SER SER A . n A 1 92 LEU 92 94 94 LEU LEU A . n A 1 93 VAL 93 95 95 VAL VAL A . n A 1 94 ASP 94 96 96 ASP ASP A . n A 1 95 SER 95 97 97 SER SER A . n A 1 96 GLY 96 98 98 GLY GLY A . n A 1 97 ASP 97 99 99 ASP ASP A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-20 2 'Structure model' 1 1 2011-12-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.5.0102 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 65 ? CG ? A ASP 63 CG 2 1 Y 1 A ASP 65 ? OD1 ? A ASP 63 OD1 3 1 Y 1 A ASP 65 ? OD2 ? A ASP 63 OD2 4 1 Y 1 A ARG 69 ? CD ? A ARG 67 CD 5 1 Y 1 A ARG 69 ? NE ? A ARG 67 NE 6 1 Y 1 A ARG 69 ? CZ ? A ARG 67 CZ 7 1 Y 1 A ARG 69 ? NH1 ? A ARG 67 NH1 8 1 Y 1 A ARG 69 ? NH2 ? A ARG 67 NH2 9 1 Y 1 A LYS 73 ? CD ? A LYS 71 CD 10 1 Y 1 A LYS 73 ? CE ? A LYS 71 CE 11 1 Y 1 A LYS 73 ? NZ ? A LYS 71 NZ 12 1 Y 1 A ARG 77 ? CD ? A ARG 75 CD 13 1 Y 1 A ARG 77 ? NE ? A ARG 75 NE 14 1 Y 1 A ARG 77 ? CZ ? A ARG 75 CZ 15 1 Y 1 A ARG 77 ? NH1 ? A ARG 75 NH1 16 1 Y 1 A ARG 77 ? NH2 ? A ARG 75 NH2 17 1 Y 1 A GLN 92 ? CG ? A GLN 90 CG 18 1 Y 1 A GLN 92 ? CD ? A GLN 90 CD 19 1 Y 1 A GLN 92 ? OE1 ? A GLN 90 OE1 20 1 Y 1 A GLN 92 ? NE2 ? A GLN 90 NE2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1 1 HOH HOH A . B 2 HOH 2 2 2 HOH HOH A . B 2 HOH 3 100 100 HOH HOH A . B 2 HOH 4 101 101 HOH HOH A . B 2 HOH 5 102 102 HOH HOH A . B 2 HOH 6 103 103 HOH HOH A . B 2 HOH 7 104 104 HOH HOH A . B 2 HOH 8 105 105 HOH HOH A . B 2 HOH 9 106 3 HOH HOH A . B 2 HOH 10 107 4 HOH HOH A . B 2 HOH 11 108 5 HOH HOH A . B 2 HOH 12 109 6 HOH HOH A . B 2 HOH 13 110 7 HOH HOH A . B 2 HOH 14 111 8 HOH HOH A . B 2 HOH 15 112 9 HOH HOH A . B 2 HOH 16 113 10 HOH HOH A . B 2 HOH 17 114 11 HOH HOH A . B 2 HOH 18 115 12 HOH HOH A . B 2 HOH 19 116 13 HOH HOH A . B 2 HOH 20 117 14 HOH HOH A . B 2 HOH 21 118 15 HOH HOH A . B 2 HOH 22 119 16 HOH HOH A . B 2 HOH 23 120 17 HOH HOH A . B 2 HOH 24 121 18 HOH HOH A . B 2 HOH 25 122 19 HOH HOH A . B 2 HOH 26 123 20 HOH HOH A . B 2 HOH 27 124 21 HOH HOH A . B 2 HOH 28 125 23 HOH HOH A . B 2 HOH 29 126 24 HOH HOH A . B 2 HOH 30 127 25 HOH HOH A . B 2 HOH 31 128 26 HOH HOH A . B 2 HOH 32 129 27 HOH HOH A . B 2 HOH 33 130 28 HOH HOH A . B 2 HOH 34 131 29 HOH HOH A . B 2 HOH 35 132 30 HOH HOH A . B 2 HOH 36 133 31 HOH HOH A . B 2 HOH 37 134 32 HOH HOH A . B 2 HOH 38 135 33 HOH HOH A . B 2 HOH 39 136 34 HOH HOH A . B 2 HOH 40 137 36 HOH HOH A . B 2 HOH 41 138 37 HOH HOH A . B 2 HOH 42 139 38 HOH HOH A . B 2 HOH 43 140 39 HOH HOH A . B 2 HOH 44 141 40 HOH HOH A . B 2 HOH 45 142 41 HOH HOH A . B 2 HOH 46 143 42 HOH HOH A . B 2 HOH 47 144 43 HOH HOH A . B 2 HOH 48 145 44 HOH HOH A . B 2 HOH 49 146 45 HOH HOH A . B 2 HOH 50 147 46 HOH HOH A . B 2 HOH 51 148 47 HOH HOH A . B 2 HOH 52 149 50 HOH HOH A . B 2 HOH 53 150 51 HOH HOH A . B 2 HOH 54 151 53 HOH HOH A . B 2 HOH 55 152 54 HOH HOH A . B 2 HOH 56 153 55 HOH HOH A . B 2 HOH 57 154 56 HOH HOH A . B 2 HOH 58 155 57 HOH HOH A . B 2 HOH 59 156 58 HOH HOH A . B 2 HOH 60 157 59 HOH HOH A . B 2 HOH 61 158 60 HOH HOH A . B 2 HOH 62 159 61 HOH HOH A . B 2 HOH 63 160 62 HOH HOH A . B 2 HOH 64 161 63 HOH HOH A . B 2 HOH 65 162 64 HOH HOH A . B 2 HOH 66 163 65 HOH HOH A . B 2 HOH 67 164 66 HOH HOH A . B 2 HOH 68 165 67 HOH HOH A . B 2 HOH 69 166 68 HOH HOH A . B 2 HOH 70 167 69 HOH HOH A . B 2 HOH 71 168 70 HOH HOH A . B 2 HOH 72 169 71 HOH HOH A . B 2 HOH 73 170 72 HOH HOH A . B 2 HOH 74 171 73 HOH HOH A . B 2 HOH 75 172 74 HOH HOH A . B 2 HOH 76 173 75 HOH HOH A . B 2 HOH 77 174 76 HOH HOH A . B 2 HOH 78 175 77 HOH HOH A . B 2 HOH 79 176 79 HOH HOH A . B 2 HOH 80 177 80 HOH HOH A . B 2 HOH 81 178 81 HOH HOH A . B 2 HOH 82 179 82 HOH HOH A . B 2 HOH 83 180 83 HOH HOH A . B 2 HOH 84 181 84 HOH HOH A . B 2 HOH 85 182 85 HOH HOH A . B 2 HOH 86 183 86 HOH HOH A . B 2 HOH 87 184 87 HOH HOH A . B 2 HOH 88 185 88 HOH HOH A . B 2 HOH 89 186 89 HOH HOH A . B 2 HOH 90 187 90 HOH HOH A . B 2 HOH 91 188 91 HOH HOH A . B 2 HOH 92 189 92 HOH HOH A . B 2 HOH 93 190 93 HOH HOH A . B 2 HOH 94 191 94 HOH HOH A . B 2 HOH 95 192 96 HOH HOH A . B 2 HOH 96 193 97 HOH HOH A . B 2 HOH 97 194 98 HOH HOH A . B 2 HOH 98 195 99 HOH HOH A . #