HEADER TRANSFERASE 30-AUG-10 3ONP TITLE CRYSTAL STRUCTURE OF TRNA/RRNA METHYLTRANSFERASE SPOU FROM RHODOBACTER TITLE 2 SPHAEROIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA/RRNA METHYLTRANSFERASE (SPOU); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 3 ORGANISM_TAXID: 272943; SOURCE 4 STRAIN: 2.4.1; SOURCE 5 GENE: RHOS4_30450, RSP_3829; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG29 KEYWDS STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, MCSG, ALPHA-BETA SANDWICH, KEYWDS 3 METHYLTRANSFERASE, CYTOSOL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,C.TESAR,R.JEDRZEJCZAK,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 2 22-SEP-10 3ONP 1 LINK REVDAT 1 08-SEP-10 3ONP 0 JRNL AUTH Y.KIM,C.TESAR,R.JEDRZEJCZAK,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF TRNA/RRNA METHYLTRANSFERASE SPOU FROM JRNL TITL 2 RHODOBACTER SPHAEROIDES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 17764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 961 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1162 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1218 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : -0.43000 REMARK 3 B33 (A**2) : 0.65000 REMARK 3 B12 (A**2) : -0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.767 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1410 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1921 ; 1.505 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 186 ; 5.663 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;32.402 ;21.791 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 228 ;18.109 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;20.397 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 206 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1130 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 884 ; 1.209 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1429 ; 2.219 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 526 ; 3.060 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 492 ; 5.252 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ONP COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-10. REMARK 100 THE RCSB ID CODE IS RCSB061345. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18791 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 17.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.78600 REMARK 200 FOR SHELL : 2.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL3000, SHELXS,MLPHARE,RESOLVE,SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM ACETATE, 0.085 M NA REMARK 280 CITRATE PH 5.6, 25.5% PEG 4000, 15% GLYCEROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.73667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.36833 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.55250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.18417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 115.92083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.73667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 46.36833 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 23.18417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 69.55250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 115.92083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 37.39100 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 64.76311 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 23.18417 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 355 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 HIS A 162 REMARK 465 ASP A 163 REMARK 465 GLU A 164 REMARK 465 THR A 165 REMARK 465 PRO A 166 REMARK 465 PRO A 167 REMARK 465 GLU A 168 REMARK 465 VAL A 169 REMARK 465 ILE A 170 REMARK 465 ASP A 171 REMARK 465 MSE A 172 REMARK 465 ALA A 173 REMARK 465 ARG A 174 REMARK 465 VAL A 175 REMARK 465 ASP A 176 REMARK 465 PHE A 177 REMARK 465 ALA A 178 REMARK 465 SER A 179 REMARK 465 GLY A 180 REMARK 465 LEU A 181 REMARK 465 GLU A 182 REMARK 465 VAL A 183 REMARK 465 GLU A 184 REMARK 465 LYS A 185 REMARK 465 LEU A 186 REMARK 465 GLY A 187 REMARK 465 ASP A 188 REMARK 465 HIS A 189 REMARK 465 PHE A 190 REMARK 465 GLU A 191 REMARK 465 GLU A 192 REMARK 465 LYS A 193 REMARK 465 LEU A 194 REMARK 465 GLU A 195 REMARK 465 ALA A 196 REMARK 465 ALA A 197 REMARK 465 GLY A 198 REMARK 465 PHE A 199 REMARK 465 PHE A 200 REMARK 465 PHE A 201 REMARK 465 PRO A 202 REMARK 465 PRO A 203 REMARK 465 GLU A 204 REMARK 465 LYS A 205 REMARK 465 ALA A 206 REMARK 465 PRO A 207 REMARK 465 GLY A 208 REMARK 465 MSE A 209 REMARK 465 LYS A 210 REMARK 465 LEU A 211 REMARK 465 ASN A 212 REMARK 465 LEU A 213 REMARK 465 ARG A 214 REMARK 465 ASN A 215 REMARK 465 MSE A 216 REMARK 465 TRP A 217 REMARK 465 ALA A 218 REMARK 465 ARG A 219 REMARK 465 LEU A 220 REMARK 465 PRO A 221 REMARK 465 LEU A 222 REMARK 465 THR A 223 REMARK 465 ARG A 224 REMARK 465 ALA A 225 REMARK 465 ASP A 226 REMARK 465 VAL A 227 REMARK 465 GLN A 228 REMARK 465 THR A 229 REMARK 465 LEU A 230 REMARK 465 HIS A 231 REMARK 465 GLY A 232 REMARK 465 MSE A 233 REMARK 465 LEU A 234 REMARK 465 ARG A 235 REMARK 465 GLN A 236 REMARK 465 ILE A 237 REMARK 465 ALA A 238 REMARK 465 TRP A 239 REMARK 465 LYS A 240 REMARK 465 LEU A 241 REMARK 465 LYS A 242 REMARK 465 GLN A 243 REMARK 465 GLU A 244 REMARK 465 ASN A 245 REMARK 465 LEU A 246 REMARK 465 TYR A 247 REMARK 465 PHE A 248 REMARK 465 GLN A 249 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 52 -116.11 52.17 REMARK 500 THR A 88 -4.05 80.33 REMARK 500 SER A 144 15.58 -143.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 255 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC63699 RELATED DB: TARGETDB DBREF 3ONP A 1 243 UNP Q3IXX1 Q3IXX1_RHOS4 1 243 SEQADV 3ONP GLU A 244 UNP Q3IXX1 EXPRESSION TAG SEQADV 3ONP ASN A 245 UNP Q3IXX1 EXPRESSION TAG SEQADV 3ONP LEU A 246 UNP Q3IXX1 EXPRESSION TAG SEQADV 3ONP TYR A 247 UNP Q3IXX1 EXPRESSION TAG SEQADV 3ONP PHE A 248 UNP Q3IXX1 EXPRESSION TAG SEQADV 3ONP GLN A 249 UNP Q3IXX1 EXPRESSION TAG SEQRES 1 A 249 MSE SER ILE GLU PRO VAL PHE ILE LEU VAL ARG PRO GLN SEQRES 2 A 249 MSE GLY GLU ASN ILE GLY ALA ALA ALA ARG ALA MSE LEU SEQRES 3 A 249 ASN PHE GLY LEU GLY ARG LEU ARG ILE VAL ASP PRO ARG SEQRES 4 A 249 ASP GLY TRP PRO ASN PRO LYS ALA VAL ALA MSE ALA SER SEQRES 5 A 249 GLY ALA GLY ARG LEU LEU ASP HIS ALA GLY LEU PHE PRO SEQRES 6 A 249 THR VAL ALA GLU ALA ILE ARG ASP CYS ASP TYR VAL PHE SEQRES 7 A 249 ALA THR THR ALA ARG GLY ARG GLU LEU THR LYS PRO VAL SEQRES 8 A 249 MSE THR PRO GLU ARG ALA MSE ALA HIS GLY ARG ALA LEU SEQRES 9 A 249 THR GLY GLU GLY ARG ARG VAL GLY ILE LEU PHE GLY PRO SEQRES 10 A 249 GLU ARG THR GLY LEU GLU ASN GLU ASP VAL ALA LEU ALA SEQRES 11 A 249 ASN ALA ILE VAL THR VAL PRO VAL ASN PRO GLU PHE PHE SEQRES 12 A 249 SER LEU ASN LEU ALA GLN CYS VAL LEU LEU LEU ALA TYR SEQRES 13 A 249 GLU TRP ARG ARG GLN HIS ASP GLU THR PRO PRO GLU VAL SEQRES 14 A 249 ILE ASP MSE ALA ARG VAL ASP PHE ALA SER GLY LEU GLU SEQRES 15 A 249 VAL GLU LYS LEU GLY ASP HIS PHE GLU GLU LYS LEU GLU SEQRES 16 A 249 ALA ALA GLY PHE PHE PHE PRO PRO GLU LYS ALA PRO GLY SEQRES 17 A 249 MSE LYS LEU ASN LEU ARG ASN MSE TRP ALA ARG LEU PRO SEQRES 18 A 249 LEU THR ARG ALA ASP VAL GLN THR LEU HIS GLY MSE LEU SEQRES 19 A 249 ARG GLN ILE ALA TRP LYS LEU LYS GLN GLU ASN LEU TYR SEQRES 20 A 249 PHE GLN MODRES 3ONP MSE A 14 MET SELENOMETHIONINE MODRES 3ONP MSE A 25 MET SELENOMETHIONINE MODRES 3ONP MSE A 50 MET SELENOMETHIONINE MODRES 3ONP MSE A 92 MET SELENOMETHIONINE MODRES 3ONP MSE A 98 MET SELENOMETHIONINE HET MSE A 14 8 HET MSE A 25 8 HET MSE A 50 8 HET MSE A 92 8 HET MSE A 98 8 HET ACY A 250 4 HET BME A 251 8 HET GOL A 252 6 HET CL A 253 1 HET BME A 254 4 HET ACY A 255 4 HETNAM MSE SELENOMETHIONINE HETNAM ACY ACETIC ACID HETNAM BME BETA-MERCAPTOETHANOL HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 ACY 2(C2 H4 O2) FORMUL 3 BME 2(C2 H6 O S) FORMUL 4 GOL C3 H8 O3 FORMUL 5 CL CL 1- FORMUL 8 HOH *107(H2 O) HELIX 1 1 MSE A 14 PHE A 28 1 15 HELIX 2 2 ASN A 44 SER A 52 1 9 HELIX 3 3 ALA A 54 HIS A 60 1 7 HELIX 4 4 THR A 66 ARG A 72 1 7 HELIX 5 5 THR A 93 GLU A 107 1 15 HELIX 6 6 GLU A 123 ALA A 128 1 6 HELIX 7 7 ASN A 146 GLN A 161 1 16 SHEET 1 A 7 GLY A 62 PHE A 64 0 SHEET 2 A 7 LEU A 33 VAL A 36 1 N ILE A 35 O GLY A 62 SHEET 3 A 7 VAL A 6 VAL A 10 1 N LEU A 9 O VAL A 36 SHEET 4 A 7 VAL A 111 PHE A 115 1 O PHE A 115 N VAL A 10 SHEET 5 A 7 TYR A 76 THR A 81 1 N PHE A 78 O LEU A 114 SHEET 6 A 7 ALA A 132 THR A 135 1 O VAL A 134 N ALA A 79 SHEET 7 A 7 VAL A 91 MSE A 92 1 N MSE A 92 O ILE A 133 LINK C GLN A 13 N MSE A 14 1555 1555 1.32 LINK C MSE A 14 N GLY A 15 1555 1555 1.34 LINK C ALA A 24 N MSE A 25 1555 1555 1.34 LINK C MSE A 25 N LEU A 26 1555 1555 1.32 LINK C ALA A 49 N MSE A 50 1555 1555 1.33 LINK C MSE A 50 N ALA A 51 1555 1555 1.33 LINK C VAL A 91 N MSE A 92 1555 1555 1.34 LINK C MSE A 92 N THR A 93 1555 1555 1.33 LINK C ALA A 97 N MSE A 98 1555 1555 1.34 LINK C MSE A 98 N ALA A 99 1555 1555 1.35 LINK SG CYS A 74 S2 BME A 254 1555 1555 1.96 LINK SG BCYS A 150 S2 BBME A 251 1555 1555 2.01 LINK SG ACYS A 150 S2 ABME A 251 1555 1555 2.14 CISPEP 1 TRP A 42 PRO A 43 0 0.30 SITE 1 AC1 6 GLY A 116 PRO A 117 GLY A 121 LEU A 145 SITE 2 AC1 6 CYS A 150 BME A 251 SITE 1 AC2 9 THR A 81 ALA A 82 VAL A 136 PHE A 143 SITE 2 AC2 9 LEU A 145 CYS A 150 ACY A 250 HOH A 301 SITE 3 AC2 9 HOH A 324 SITE 1 AC3 5 ILE A 71 ARG A 72 CYS A 74 ASP A 75 SITE 2 AC3 5 HOH A 323 SITE 1 AC4 3 GLN A 13 ASN A 17 GLU A 118 SITE 1 AC5 8 VAL A 6 ARG A 32 ARG A 34 ASP A 73 SITE 2 AC5 8 CYS A 74 ARG A 110 VAL A 111 GLY A 112 SITE 1 AC6 4 HIS A 60 TYR A 76 HOH A 287 HOH A 296 CRYST1 74.782 74.782 139.105 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013372 0.007720 0.000000 0.00000 SCALE2 0.000000 0.015441 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007189 0.00000