HEADER ISOMERASE 30-AUG-10 3OO2 TITLE 2.37 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF AN ALANINE RACEMASE TITLE 2 (ALR) FROM STAPHYLOCOCCUS AUREUS SUBSP. AUREUS COL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALANINE RACEMASE 1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.1.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 93062; SOURCE 4 STRAIN: COL; SOURCE 5 GENE: ALR, ALR1, SACOL2060; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)/MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS ALANINE RACEMASE, INFECTIOUS DISEASES, CENTER FOR STRUCTURAL GENOMICS KEYWDS 2 OF INFECTIOUS DISEASES (CSGID), ALANINE AND ASPARTATE METABOLISM AND KEYWDS 3 D-ALANINE METABOLISM, BIOSYNTHESIS AND DEGRADATION OF MUREIN KEYWDS 4 SACCULUS AND PEPTIDOGLYCAN, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.S.HALAVATY,L.SHUVALOVA,G.MINASOV,J.WINSOR,I.DUBROVSKA,K.KWON, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 3 03-APR-24 3OO2 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3OO2 1 REMARK REVDAT 1 06-OCT-10 3OO2 0 JRNL AUTH A.S.HALAVATY,L.SHUVALOVA,G.MINASOV,J.WINSOR,I.DUBROVSKA, JRNL AUTH 2 K.KWON,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 2.37 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF AN ALANINE JRNL TITL 2 RACEMASE (ALR) FROM STAPHYLOCOCCUS AUREUS SUBSP. AUREUS COL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 28741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1533 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2042 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5866 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.52000 REMARK 3 B22 (A**2) : -1.62000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.285 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.218 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.971 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6051 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4049 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8196 ; 1.567 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9932 ; 0.835 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 750 ; 3.007 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 273 ;29.905 ;24.689 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1081 ;11.545 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;14.623 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 933 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6682 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1160 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3731 ; 1.105 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1513 ; 0.299 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6058 ; 1.949 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2320 ; 3.317 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2138 ; 4.850 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6358 53.2467 -10.2212 REMARK 3 T TENSOR REMARK 3 T11: 0.0651 T22: 0.1110 REMARK 3 T33: 0.1167 T12: -0.0417 REMARK 3 T13: -0.0502 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 1.1587 L22: 2.1201 REMARK 3 L33: 1.4655 L12: 0.8539 REMARK 3 L13: -0.1829 L23: 0.2976 REMARK 3 S TENSOR REMARK 3 S11: -0.2172 S12: 0.1787 S13: -0.0096 REMARK 3 S21: -0.2563 S22: 0.0246 S23: 0.2592 REMARK 3 S31: -0.0687 S32: -0.1987 S33: 0.1925 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 175 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): 3.8424 58.3328 -14.2222 REMARK 3 T TENSOR REMARK 3 T11: 0.1352 T22: 0.1853 REMARK 3 T33: 0.0201 T12: -0.0963 REMARK 3 T13: 0.0291 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 1.0595 L22: 2.5667 REMARK 3 L33: 1.7450 L12: 0.4976 REMARK 3 L13: -0.1101 L23: 1.3320 REMARK 3 S TENSOR REMARK 3 S11: -0.2499 S12: 0.3557 S13: -0.0490 REMARK 3 S21: -0.5333 S22: 0.2619 S23: -0.0976 REMARK 3 S31: -0.2469 S32: 0.1609 S33: -0.0120 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 270 A 382 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0823 73.8442 0.4201 REMARK 3 T TENSOR REMARK 3 T11: 0.1454 T22: 0.0816 REMARK 3 T33: 0.0924 T12: -0.0883 REMARK 3 T13: -0.0105 T23: 0.0512 REMARK 3 L TENSOR REMARK 3 L11: 1.6508 L22: 1.7129 REMARK 3 L33: 1.6845 L12: 0.2955 REMARK 3 L13: 0.3235 L23: 0.6737 REMARK 3 S TENSOR REMARK 3 S11: -0.0898 S12: 0.1323 S13: 0.2106 REMARK 3 S21: -0.2788 S22: 0.1037 S23: -0.1884 REMARK 3 S31: -0.4397 S32: 0.1999 S33: -0.0140 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 133 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7112 75.8146 19.6582 REMARK 3 T TENSOR REMARK 3 T11: 0.0545 T22: 0.1728 REMARK 3 T33: 0.1026 T12: 0.0132 REMARK 3 T13: -0.0147 T23: -0.0482 REMARK 3 L TENSOR REMARK 3 L11: 1.2878 L22: 3.7578 REMARK 3 L33: 1.1237 L12: 0.7871 REMARK 3 L13: 0.5574 L23: 1.2069 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: -0.2201 S13: 0.1975 REMARK 3 S21: 0.1084 S22: -0.2944 S23: 0.4285 REMARK 3 S31: -0.0934 S32: -0.3360 S33: 0.2871 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 134 B 200 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5673 85.7827 28.0407 REMARK 3 T TENSOR REMARK 3 T11: 0.2075 T22: 0.1557 REMARK 3 T33: 0.1744 T12: -0.0799 REMARK 3 T13: -0.1091 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 4.6551 L22: 4.9371 REMARK 3 L33: 4.5033 L12: -2.4659 REMARK 3 L13: 0.1869 L23: -0.6157 REMARK 3 S TENSOR REMARK 3 S11: -0.0913 S12: -0.1444 S13: 0.6552 REMARK 3 S21: 0.6680 S22: -0.1613 S23: -0.5345 REMARK 3 S31: 0.1054 S32: 0.2453 S33: 0.2526 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 201 B 382 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1354 53.0417 13.8799 REMARK 3 T TENSOR REMARK 3 T11: 0.0746 T22: 0.0711 REMARK 3 T33: 0.0749 T12: -0.0326 REMARK 3 T13: -0.0202 T23: 0.0694 REMARK 3 L TENSOR REMARK 3 L11: 1.4348 L22: 2.5931 REMARK 3 L33: 1.8772 L12: 0.3096 REMARK 3 L13: 0.5670 L23: 1.2946 REMARK 3 S TENSOR REMARK 3 S11: 0.0684 S12: -0.1267 S13: -0.1975 REMARK 3 S21: 0.4174 S22: -0.0668 S23: 0.0037 REMARK 3 S31: 0.2058 S32: -0.0013 S33: -0.0016 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3OO2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000061358. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND[111] REMARK 200 OPTICS : BE-LENSES/DIAMOND LAUE MONO REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30323 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.57200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: BALBES MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7.6 MG/ML PROTEIN IN 10 MM TRIS/HCL PH REMARK 280 8.3, 0.5 M NACL, 5 MM BME. CRYSTALS GREW FROM 0.1 M MIB BUFFER REMARK 280 PH 5.0, 25 % (W/V) PEG1500 (THE PACT SUITE CONDITION #14), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.86750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.50400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.15500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.50400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.86750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.15500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 267 REMARK 465 THR A 268 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 GLY B 120 REMARK 465 GLU B 121 REMARK 465 GLN B 122 REMARK 465 GLU B 123 REMARK 465 GLY B 260 REMARK 465 GLU B 261 REMARK 465 SER B 262 REMARK 465 VAL B 263 REMARK 465 SER B 264 REMARK 465 TYR B 265 REMARK 465 GLY B 266 REMARK 465 ALA B 267 REMARK 465 THR B 268 REMARK 465 TYR B 269 REMARK 465 THR B 270 REMARK 465 ALA B 271 REMARK 465 THR B 272 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 136 90.89 -56.29 REMARK 500 ARG A 138 -86.54 -118.04 REMARK 500 CYS A 171 37.67 -141.70 REMARK 500 GLN A 253 149.95 -171.93 REMARK 500 ASN A 300 48.98 36.55 REMARK 500 ASN A 334 54.08 -90.64 REMARK 500 LEU A 360 105.83 -53.59 REMARK 500 ALA B 90 -55.04 -28.55 REMARK 500 LYS B 91 -59.73 -26.35 REMARK 500 ILE B 115 43.02 -73.55 REMARK 500 LYS B 116 -14.49 -145.19 REMARK 500 ARG B 138 100.68 -26.66 REMARK 500 LEU B 139 134.23 -23.13 REMARK 500 CYS B 212 72.34 49.15 REMARK 500 VAL B 239 127.95 -32.38 REMARK 500 ASN B 334 41.75 -84.14 REMARK 500 THR B 351 -157.78 -148.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 383 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 154 O REMARK 620 2 TYR A 157 O 72.3 REMARK 620 3 LEU A 160 O 96.8 99.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 383 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 154 O REMARK 620 2 TYR B 157 O 72.1 REMARK 620 3 LEU B 160 O 105.2 83.9 REMARK 620 4 HOH B 446 O 76.7 66.2 148.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 383 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 384 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 385 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 386 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 383 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 384 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 385 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP00688 RELATED DB: TARGETDB DBREF 3OO2 A 1 382 UNP Q5HED1 ALR1_STAAC 1 382 DBREF 3OO2 B 1 382 UNP Q5HED1 ALR1_STAAC 1 382 SEQADV 3OO2 SER A -2 UNP Q5HED1 EXPRESSION TAG SEQADV 3OO2 ASN A -1 UNP Q5HED1 EXPRESSION TAG SEQADV 3OO2 ALA A 0 UNP Q5HED1 EXPRESSION TAG SEQADV 3OO2 SER B -2 UNP Q5HED1 EXPRESSION TAG SEQADV 3OO2 ASN B -1 UNP Q5HED1 EXPRESSION TAG SEQADV 3OO2 ALA B 0 UNP Q5HED1 EXPRESSION TAG SEQRES 1 A 385 SER ASN ALA MET SER ASP LYS TYR TYR ARG SER ALA TYR SEQRES 2 A 385 MET ASN VAL ASP LEU ASN ALA VAL ALA SER ASN PHE LYS SEQRES 3 A 385 VAL PHE SER THR LEU HIS PRO ASN LYS THR VAL MET ALA SEQRES 4 A 385 VAL VAL LYS ALA ASN ALA TYR GLY LEU GLY SER VAL LYS SEQRES 5 A 385 VAL ALA ARG HIS LEU MET GLU ASN GLY ALA THR PHE PHE SEQRES 6 A 385 ALA VAL ALA THR LEU ASP GLU ALA ILE GLU LEU ARG MET SEQRES 7 A 385 HIS GLY ILE THR ALA LYS ILE LEU VAL LEU GLY VAL LEU SEQRES 8 A 385 PRO ALA LYS ASP ILE ASP LYS ALA ILE GLN HIS ARG VAL SEQRES 9 A 385 ALA LEU THR VAL PRO SER LYS GLN TRP LEU LYS GLU ALA SEQRES 10 A 385 ILE LYS ASN ILE SER GLY GLU GLN GLU LYS LYS LEU TRP SEQRES 11 A 385 LEU HIS ILE LYS LEU ASP THR GLY MET GLY ARG LEU GLY SEQRES 12 A 385 ILE LYS ASP THR LYS THR TYR GLN GLU VAL ILE GLU ILE SEQRES 13 A 385 ILE GLN GLN TYR GLU GLN LEU VAL PHE GLU GLY VAL PHE SEQRES 14 A 385 THR HIS PHE ALA CYS ALA ASP GLU PRO GLY ASP MET THR SEQRES 15 A 385 THR GLU GLN TYR GLN ARG PHE LYS ASP MET VAL ASN GLU SEQRES 16 A 385 ALA ILE LYS PRO GLU TYR ILE HIS CYS GLN ASN SER ALA SEQRES 17 A 385 GLY SER LEU LEU MET ASP CYS GLN PHE CYS ASN ALA ILE SEQRES 18 A 385 ARG PRO GLY ILE SER LEU TYR GLY TYR TYR PRO SER GLU SEQRES 19 A 385 TYR VAL GLN GLN LYS VAL LYS VAL HIS LEU LYS PRO SER SEQRES 20 A 385 VAL GLN LEU ILE ALA ASN VAL VAL GLN THR LYS THR LEU SEQRES 21 A 385 GLN ALA GLY GLU SER VAL SER TYR GLY ALA THR TYR THR SEQRES 22 A 385 ALA THR ASP PRO THR THR ILE ALA LEU LEU PRO ILE GLY SEQRES 23 A 385 TYR ALA ASP GLY TYR LEU ARG ILE MET GLN GLY SER PHE SEQRES 24 A 385 VAL ASN VAL ASN GLY HIS GLN CYS GLU VAL ILE GLY ARG SEQRES 25 A 385 VAL CYS MET ASP GLN THR ILE VAL LYS VAL PRO ASP GLN SEQRES 26 A 385 VAL LYS ALA GLY ASP SER VAL ILE LEU ILE ASP ASN HIS SEQRES 27 A 385 ARG GLU SER PRO GLN SER VAL GLU VAL VAL ALA GLU LYS SEQRES 28 A 385 GLN HIS THR ILE ASN TYR GLU VAL LEU CYS ASN LEU SER SEQRES 29 A 385 ARG ARG LEU PRO ARG ILE TYR HIS ASP GLY ASP GLN ARG SEQRES 30 A 385 PHE VAL THR ASN GLU LEU LEU LYS SEQRES 1 B 385 SER ASN ALA MET SER ASP LYS TYR TYR ARG SER ALA TYR SEQRES 2 B 385 MET ASN VAL ASP LEU ASN ALA VAL ALA SER ASN PHE LYS SEQRES 3 B 385 VAL PHE SER THR LEU HIS PRO ASN LYS THR VAL MET ALA SEQRES 4 B 385 VAL VAL LYS ALA ASN ALA TYR GLY LEU GLY SER VAL LYS SEQRES 5 B 385 VAL ALA ARG HIS LEU MET GLU ASN GLY ALA THR PHE PHE SEQRES 6 B 385 ALA VAL ALA THR LEU ASP GLU ALA ILE GLU LEU ARG MET SEQRES 7 B 385 HIS GLY ILE THR ALA LYS ILE LEU VAL LEU GLY VAL LEU SEQRES 8 B 385 PRO ALA LYS ASP ILE ASP LYS ALA ILE GLN HIS ARG VAL SEQRES 9 B 385 ALA LEU THR VAL PRO SER LYS GLN TRP LEU LYS GLU ALA SEQRES 10 B 385 ILE LYS ASN ILE SER GLY GLU GLN GLU LYS LYS LEU TRP SEQRES 11 B 385 LEU HIS ILE LYS LEU ASP THR GLY MET GLY ARG LEU GLY SEQRES 12 B 385 ILE LYS ASP THR LYS THR TYR GLN GLU VAL ILE GLU ILE SEQRES 13 B 385 ILE GLN GLN TYR GLU GLN LEU VAL PHE GLU GLY VAL PHE SEQRES 14 B 385 THR HIS PHE ALA CYS ALA ASP GLU PRO GLY ASP MET THR SEQRES 15 B 385 THR GLU GLN TYR GLN ARG PHE LYS ASP MET VAL ASN GLU SEQRES 16 B 385 ALA ILE LYS PRO GLU TYR ILE HIS CYS GLN ASN SER ALA SEQRES 17 B 385 GLY SER LEU LEU MET ASP CYS GLN PHE CYS ASN ALA ILE SEQRES 18 B 385 ARG PRO GLY ILE SER LEU TYR GLY TYR TYR PRO SER GLU SEQRES 19 B 385 TYR VAL GLN GLN LYS VAL LYS VAL HIS LEU LYS PRO SER SEQRES 20 B 385 VAL GLN LEU ILE ALA ASN VAL VAL GLN THR LYS THR LEU SEQRES 21 B 385 GLN ALA GLY GLU SER VAL SER TYR GLY ALA THR TYR THR SEQRES 22 B 385 ALA THR ASP PRO THR THR ILE ALA LEU LEU PRO ILE GLY SEQRES 23 B 385 TYR ALA ASP GLY TYR LEU ARG ILE MET GLN GLY SER PHE SEQRES 24 B 385 VAL ASN VAL ASN GLY HIS GLN CYS GLU VAL ILE GLY ARG SEQRES 25 B 385 VAL CYS MET ASP GLN THR ILE VAL LYS VAL PRO ASP GLN SEQRES 26 B 385 VAL LYS ALA GLY ASP SER VAL ILE LEU ILE ASP ASN HIS SEQRES 27 B 385 ARG GLU SER PRO GLN SER VAL GLU VAL VAL ALA GLU LYS SEQRES 28 B 385 GLN HIS THR ILE ASN TYR GLU VAL LEU CYS ASN LEU SER SEQRES 29 B 385 ARG ARG LEU PRO ARG ILE TYR HIS ASP GLY ASP GLN ARG SEQRES 30 B 385 PHE VAL THR ASN GLU LEU LEU LYS HET NA A 383 1 HET BME A 384 4 HET BME A 385 4 HET PO4 A 386 5 HET NA B 383 1 HET BME B 384 4 HET PO4 B 385 5 HETNAM NA SODIUM ION HETNAM BME BETA-MERCAPTOETHANOL HETNAM PO4 PHOSPHATE ION FORMUL 3 NA 2(NA 1+) FORMUL 4 BME 3(C2 H6 O S) FORMUL 6 PO4 2(O4 P 3-) FORMUL 10 HOH *120(H2 O) HELIX 1 1 LEU A 15 HIS A 29 1 15 HELIX 2 2 VAL A 38 GLY A 44 1 7 HELIX 3 3 GLY A 46 ASN A 57 1 12 HELIX 4 4 THR A 66 MET A 75 1 10 HELIX 5 5 PRO A 89 LYS A 91 5 3 HELIX 6 6 ASP A 92 HIS A 99 1 8 HELIX 7 7 SER A 107 ASN A 117 1 11 HELIX 8 8 ASP A 143 GLN A 155 1 13 HELIX 9 9 ASP A 177 GLU A 192 1 16 HELIX 10 10 ASN A 203 MET A 210 1 8 HELIX 11 11 GLY A 221 GLY A 226 5 6 HELIX 12 12 SER A 230 VAL A 237 1 8 HELIX 13 13 GLY A 283 GLY A 287 5 5 HELIX 14 14 LEU A 289 GLN A 293 5 5 HELIX 15 15 SER A 341 GLN A 349 1 9 HELIX 16 16 ILE A 352 LEU A 360 1 9 HELIX 17 17 ASN A 378 LYS A 382 5 5 HELIX 18 18 LEU B 15 HIS B 29 1 15 HELIX 19 19 VAL B 38 GLY B 44 1 7 HELIX 20 20 GLY B 46 GLU B 56 1 11 HELIX 21 21 THR B 66 HIS B 76 1 11 HELIX 22 22 PRO B 89 LYS B 91 5 3 HELIX 23 23 ASP B 92 HIS B 99 1 8 HELIX 24 24 SER B 107 ILE B 115 1 9 HELIX 25 25 ASP B 143 TYR B 157 1 15 HELIX 26 26 ASP B 177 ASN B 191 1 15 HELIX 27 27 ASN B 203 MET B 210 1 8 HELIX 28 28 GLY B 221 GLY B 226 5 6 HELIX 29 29 SER B 230 GLN B 235 1 6 HELIX 30 30 GLY B 283 GLY B 287 5 5 HELIX 31 31 LEU B 289 GLN B 293 5 5 HELIX 32 32 SER B 341 GLN B 349 1 9 HELIX 33 33 ILE B 352 LEU B 360 1 9 HELIX 34 34 ASN B 378 LYS B 382 5 5 SHEET 1 A10 GLN A 253 LEU A 257 0 SHEET 2 A10 THR A 275 LEU A 280 -1 O LEU A 279 N GLN A 253 SHEET 3 A10 THR A 315 VAL A 319 -1 O THR A 315 N LEU A 280 SHEET 4 A10 HIS A 302 ILE A 307 -1 N GLU A 305 O LYS A 318 SHEET 5 A10 PHE A 296 VAL A 299 -1 N VAL A 299 O HIS A 302 SHEET 6 A10 SER A 328 ILE A 332 -1 O ILE A 330 N ASN A 298 SHEET 7 A10 VAL A 245 ASN A 250 -1 N LEU A 247 O LEU A 331 SHEET 8 A10 ALA A 9 ASP A 14 -1 N TYR A 10 O ILE A 248 SHEET 9 A10 ARG A 366 ASP A 370 1 O ILE A 367 N VAL A 13 SHEET 10 A10 GLN A 373 THR A 377 -1 O PHE A 375 N TYR A 368 SHEET 1 B 9 THR A 33 VAL A 37 0 SHEET 2 B 9 PHE A 61 VAL A 64 1 O ALA A 63 N ALA A 36 SHEET 3 B 9 LYS A 81 VAL A 84 1 O LEU A 83 N PHE A 62 SHEET 4 B 9 VAL A 101 VAL A 105 1 O ALA A 102 N ILE A 82 SHEET 5 B 9 LEU A 126 LYS A 131 1 O HIS A 129 N LEU A 103 SHEET 6 B 9 LEU A 160 PHE A 166 1 O GLY A 164 N ILE A 130 SHEET 7 B 9 TYR A 198 GLN A 202 1 O TYR A 198 N GLU A 163 SHEET 8 B 9 ALA A 217 ILE A 218 1 O ALA A 217 N ILE A 199 SHEET 9 B 9 THR A 33 VAL A 37 1 N MET A 35 O ILE A 218 SHEET 1 C10 GLN B 253 LEU B 257 0 SHEET 2 C10 THR B 275 LEU B 280 -1 O THR B 275 N LEU B 257 SHEET 3 C10 THR B 315 VAL B 319 -1 O VAL B 319 N THR B 276 SHEET 4 C10 HIS B 302 ILE B 307 -1 N GLU B 305 O LYS B 318 SHEET 5 C10 PHE B 296 VAL B 299 -1 N VAL B 299 O HIS B 302 SHEET 6 C10 SER B 328 ILE B 332 -1 O ILE B 330 N ASN B 298 SHEET 7 C10 VAL B 245 ASN B 250 -1 N ALA B 249 O VAL B 329 SHEET 8 C10 ALA B 9 ASP B 14 -1 N TYR B 10 O ILE B 248 SHEET 9 C10 ARG B 366 HIS B 369 1 O ILE B 367 N MET B 11 SHEET 10 C10 ARG B 374 THR B 377 -1 O PHE B 375 N TYR B 368 SHEET 1 D 6 THR B 33 VAL B 34 0 SHEET 2 D 6 ALA B 217 ILE B 218 1 O ILE B 218 N THR B 33 SHEET 3 D 6 TYR B 198 GLN B 202 1 N ILE B 199 O ALA B 217 SHEET 4 D 6 LEU B 160 PHE B 166 1 N GLU B 163 O TYR B 198 SHEET 5 D 6 LEU B 126 LYS B 131 1 N ILE B 130 O GLY B 164 SHEET 6 D 6 LEU B 103 VAL B 105 1 N LEU B 103 O TRP B 127 SHEET 1 E 3 ALA B 36 VAL B 37 0 SHEET 2 E 3 PHE B 61 VAL B 64 1 O ALA B 63 N ALA B 36 SHEET 3 E 3 LYS B 81 VAL B 84 1 O LYS B 81 N PHE B 62 SSBOND 1 CYS A 201 CYS A 215 1555 1555 2.08 SSBOND 2 CYS B 201 CYS B 215 1555 1555 2.10 LINK SG BCYS A 171 S2 BBME A 384 1555 1555 2.31 LINK SG ACYS A 311 S2 ABME A 385 1555 1555 1.94 LINK SG BCYS B 311 S2 BBME B 384 1555 1555 2.13 LINK O ILE A 154 NA NA A 383 1555 1555 2.64 LINK O TYR A 157 NA NA A 383 1555 1555 2.32 LINK O LEU A 160 NA NA A 383 1555 1555 2.24 LINK O ILE B 154 NA NA B 383 1555 1555 2.36 LINK O TYR B 157 NA NA B 383 1555 1555 2.52 LINK O LEU B 160 NA NA B 383 1555 1555 2.44 LINK NA NA B 383 O HOH B 446 1555 1555 2.47 SITE 1 AC1 3 ILE A 154 TYR A 157 LEU A 160 SITE 1 AC2 5 ALA A 170 CYS A 171 ASP A 173 GLU A 174 SITE 2 AC2 5 ARG B 309 SITE 1 AC3 2 CYS A 311 ARG B 138 SITE 1 AC4 6 TYR A 43 ASN A 203 SER A 204 GLY A 221 SITE 2 AC4 6 ILE A 222 TYR A 354 SITE 1 AC5 4 ILE B 154 TYR B 157 LEU B 160 HOH B 446 SITE 1 AC6 2 ARG B 309 CYS B 311 SITE 1 AC7 8 TYR B 43 ASN B 203 SER B 204 GLY B 221 SITE 2 AC7 8 ILE B 222 TYR B 354 HOH B 402 HOH B 409 CRYST1 47.735 118.310 129.008 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020949 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008452 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007751 0.00000