HEADER OXIDOREDUCTASE 31-AUG-10 3OP4 TITLE CRYSTAL STRUCTURE OF PUTATIVE 3-KETOACYL-(ACYL-CARRIER-PROTEIN) TITLE 2 REDUCTASE FROM VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. N16961 IN COMPLEX TITLE 3 WITH NADP+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.100; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: N16961; SOURCE 5 GENE: VCD_002346; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS 3-KETOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE, STRUCTURAL GENOMICS, KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, KEYWDS 3 ROSSMANN FOLD, BACTERIAL CELL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.HOU,M.CHRUSZCZ,O.ONOPRIYENKO,S.GRIMSHAW,P.POREBSKI,H.ZHENG, AUTHOR 2 A.SAVCHENKO,W.ANDERSON,W.MINOR,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 6 20-NOV-24 3OP4 1 REMARK REVDAT 5 13-APR-22 3OP4 1 AUTHOR JRNL REMARK LINK REVDAT 4 23-MAR-16 3OP4 1 JRNL REVDAT 3 25-NOV-15 3OP4 1 JRNL REVDAT 2 12-NOV-14 3OP4 1 KEYWDS REVDAT 1 22-SEP-10 3OP4 0 JRNL AUTH J.HOU,H.ZHENG,M.CHRUSZCZ,M.D.ZIMMERMAN,I.A.SHUMILIN, JRNL AUTH 2 T.OSINSKI,M.DEMAS,S.GRIMSHAW,W.MINOR JRNL TITL DISSECTING THE STRUCTURAL ELEMENTS FOR THE ACTIVATION OF JRNL TITL 2 BETA-KETOACYL-(ACYL CARRIER PROTEIN) REDUCTASE FROM VIBRIO JRNL TITL 3 CHOLERAE. JRNL REF J.BACTERIOL. V. 198 463 2015 JRNL REFN ISSN 0021-9193 JRNL PMID 26553852 JRNL DOI 10.1128/JB.00360-15 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 58281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3106 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4055 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 209 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3615 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 503 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.36000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : -0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.373 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3891 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2561 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5287 ; 1.818 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6298 ; 1.015 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 526 ; 5.825 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;33.637 ;24.800 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 686 ;12.808 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;19.783 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 616 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4386 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 719 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2499 ; 1.075 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1055 ; 0.335 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3991 ; 1.868 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1392 ; 3.655 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1285 ; 5.397 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 192 REMARK 3 ORIGIN FOR THE GROUP (A): 20.2230 7.8300 22.5360 REMARK 3 T TENSOR REMARK 3 T11: 0.0646 T22: 0.0286 REMARK 3 T33: 0.0023 T12: 0.0066 REMARK 3 T13: -0.0033 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.0288 L22: 0.2468 REMARK 3 L33: 0.2455 L12: 0.0139 REMARK 3 L13: 0.0295 L23: 0.0846 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: -0.0090 S13: -0.0064 REMARK 3 S21: 0.0377 S22: -0.0015 S23: -0.0076 REMARK 3 S31: -0.0157 S32: -0.0294 S33: 0.0020 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 193 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7400 10.7060 9.2830 REMARK 3 T TENSOR REMARK 3 T11: 0.0574 T22: 0.0339 REMARK 3 T33: 0.0079 T12: 0.0010 REMARK 3 T13: -0.0055 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.2187 L22: 0.1404 REMARK 3 L33: 0.1328 L12: 0.0097 REMARK 3 L13: 0.0559 L23: -0.0002 REMARK 3 S TENSOR REMARK 3 S11: 0.0039 S12: -0.0092 S13: -0.0233 REMARK 3 S21: 0.0217 S22: -0.0066 S23: -0.0271 REMARK 3 S31: -0.0167 S32: 0.0029 S33: 0.0027 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 192 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2790 21.2330 -10.7420 REMARK 3 T TENSOR REMARK 3 T11: 0.0576 T22: 0.0252 REMARK 3 T33: 0.0066 T12: 0.0077 REMARK 3 T13: -0.0058 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.1119 L22: 0.4226 REMARK 3 L33: 0.0511 L12: -0.0394 REMARK 3 L13: -0.0520 L23: 0.0911 REMARK 3 S TENSOR REMARK 3 S11: 0.0226 S12: 0.0082 S13: 0.0169 REMARK 3 S21: -0.0254 S22: -0.0129 S23: -0.0171 REMARK 3 S31: -0.0150 S32: -0.0165 S33: -0.0097 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 193 B 248 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7420 14.0180 1.0470 REMARK 3 T TENSOR REMARK 3 T11: 0.0533 T22: 0.0330 REMARK 3 T33: 0.0146 T12: 0.0067 REMARK 3 T13: 0.0022 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.3047 L22: 0.4907 REMARK 3 L33: 0.0593 L12: 0.0832 REMARK 3 L13: 0.0404 L23: -0.1470 REMARK 3 S TENSOR REMARK 3 S11: 0.0067 S12: -0.0039 S13: 0.0070 REMARK 3 S21: 0.0196 S22: 0.0202 S23: 0.0837 REMARK 3 S31: -0.0076 S32: -0.0045 S33: -0.0269 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3OP4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61433 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : 0.10000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.61600 REMARK 200 R SYM FOR SHELL (I) : 0.61600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M NH4 SULFATE,0.1M TRIS, PH 9, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.03500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.03500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.52900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.04750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.52900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.04750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.03500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.52900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.04750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.03500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.52900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.04750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 320 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 552 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 331 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 194 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 580 O HOH B 597 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 97 148.96 -171.40 REMARK 500 LEU A 115 -58.60 -125.80 REMARK 500 ASN B 97 143.85 -177.20 REMARK 500 LEU B 115 -56.64 -125.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 250 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP90557 RELATED DB: TARGETDB DBREF 3OP4 A 1 248 UNP C3NP04 C3NP04_VIBCJ 1 248 DBREF 3OP4 B 1 248 UNP C3NP04 C3NP04_VIBCJ 1 248 SEQRES 1 A 248 MSE SER GLN PHE MSE ASN LEU GLU GLY LYS VAL ALA LEU SEQRES 2 A 248 VAL THR GLY ALA SER ARG GLY ILE GLY LYS ALA ILE ALA SEQRES 3 A 248 GLU LEU LEU ALA GLU ARG GLY ALA LYS VAL ILE GLY THR SEQRES 4 A 248 ALA THR SER GLU SER GLY ALA GLN ALA ILE SER ASP TYR SEQRES 5 A 248 LEU GLY ASP ASN GLY LYS GLY MSE ALA LEU ASN VAL THR SEQRES 6 A 248 ASN PRO GLU SER ILE GLU ALA VAL LEU LYS ALA ILE THR SEQRES 7 A 248 ASP GLU PHE GLY GLY VAL ASP ILE LEU VAL ASN ASN ALA SEQRES 8 A 248 GLY ILE THR ARG ASP ASN LEU LEU MSE ARG MSE LYS GLU SEQRES 9 A 248 GLU GLU TRP SER ASP ILE MSE GLU THR ASN LEU THR SER SEQRES 10 A 248 ILE PHE ARG LEU SER LYS ALA VAL LEU ARG GLY MSE MSE SEQRES 11 A 248 LYS LYS ARG GLN GLY ARG ILE ILE ASN VAL GLY SER VAL SEQRES 12 A 248 VAL GLY THR MSE GLY ASN ALA GLY GLN ALA ASN TYR ALA SEQRES 13 A 248 ALA ALA LYS ALA GLY VAL ILE GLY PHE THR LYS SER MSE SEQRES 14 A 248 ALA ARG GLU VAL ALA SER ARG GLY VAL THR VAL ASN THR SEQRES 15 A 248 VAL ALA PRO GLY PHE ILE GLU THR ASP MSE THR LYS ALA SEQRES 16 A 248 LEU ASN ASP GLU GLN ARG THR ALA THR LEU ALA GLN VAL SEQRES 17 A 248 PRO ALA GLY ARG LEU GLY ASP PRO ARG GLU ILE ALA SER SEQRES 18 A 248 ALA VAL ALA PHE LEU ALA SER PRO GLU ALA ALA TYR ILE SEQRES 19 A 248 THR GLY GLU THR LEU HIS VAL ASN GLY GLY MSE TYR MSE SEQRES 20 A 248 ILE SEQRES 1 B 248 MSE SER GLN PHE MSE ASN LEU GLU GLY LYS VAL ALA LEU SEQRES 2 B 248 VAL THR GLY ALA SER ARG GLY ILE GLY LYS ALA ILE ALA SEQRES 3 B 248 GLU LEU LEU ALA GLU ARG GLY ALA LYS VAL ILE GLY THR SEQRES 4 B 248 ALA THR SER GLU SER GLY ALA GLN ALA ILE SER ASP TYR SEQRES 5 B 248 LEU GLY ASP ASN GLY LYS GLY MSE ALA LEU ASN VAL THR SEQRES 6 B 248 ASN PRO GLU SER ILE GLU ALA VAL LEU LYS ALA ILE THR SEQRES 7 B 248 ASP GLU PHE GLY GLY VAL ASP ILE LEU VAL ASN ASN ALA SEQRES 8 B 248 GLY ILE THR ARG ASP ASN LEU LEU MSE ARG MSE LYS GLU SEQRES 9 B 248 GLU GLU TRP SER ASP ILE MSE GLU THR ASN LEU THR SER SEQRES 10 B 248 ILE PHE ARG LEU SER LYS ALA VAL LEU ARG GLY MSE MSE SEQRES 11 B 248 LYS LYS ARG GLN GLY ARG ILE ILE ASN VAL GLY SER VAL SEQRES 12 B 248 VAL GLY THR MSE GLY ASN ALA GLY GLN ALA ASN TYR ALA SEQRES 13 B 248 ALA ALA LYS ALA GLY VAL ILE GLY PHE THR LYS SER MSE SEQRES 14 B 248 ALA ARG GLU VAL ALA SER ARG GLY VAL THR VAL ASN THR SEQRES 15 B 248 VAL ALA PRO GLY PHE ILE GLU THR ASP MSE THR LYS ALA SEQRES 16 B 248 LEU ASN ASP GLU GLN ARG THR ALA THR LEU ALA GLN VAL SEQRES 17 B 248 PRO ALA GLY ARG LEU GLY ASP PRO ARG GLU ILE ALA SER SEQRES 18 B 248 ALA VAL ALA PHE LEU ALA SER PRO GLU ALA ALA TYR ILE SEQRES 19 B 248 THR GLY GLU THR LEU HIS VAL ASN GLY GLY MSE TYR MSE SEQRES 20 B 248 ILE MODRES 3OP4 MSE A 5 MET SELENOMETHIONINE MODRES 3OP4 MSE A 60 MET SELENOMETHIONINE MODRES 3OP4 MSE A 100 MET SELENOMETHIONINE MODRES 3OP4 MSE A 102 MET SELENOMETHIONINE MODRES 3OP4 MSE A 111 MET SELENOMETHIONINE MODRES 3OP4 MSE A 129 MET SELENOMETHIONINE MODRES 3OP4 MSE A 130 MET SELENOMETHIONINE MODRES 3OP4 MSE A 147 MET SELENOMETHIONINE MODRES 3OP4 MSE A 169 MET SELENOMETHIONINE MODRES 3OP4 MSE A 192 MET SELENOMETHIONINE MODRES 3OP4 MSE A 245 MET SELENOMETHIONINE MODRES 3OP4 MSE A 247 MET SELENOMETHIONINE MODRES 3OP4 MSE B 5 MET SELENOMETHIONINE MODRES 3OP4 MSE B 60 MET SELENOMETHIONINE MODRES 3OP4 MSE B 100 MET SELENOMETHIONINE MODRES 3OP4 MSE B 102 MET SELENOMETHIONINE MODRES 3OP4 MSE B 111 MET SELENOMETHIONINE MODRES 3OP4 MSE B 129 MET SELENOMETHIONINE MODRES 3OP4 MSE B 130 MET SELENOMETHIONINE MODRES 3OP4 MSE B 147 MET SELENOMETHIONINE MODRES 3OP4 MSE B 169 MET SELENOMETHIONINE MODRES 3OP4 MSE B 192 MET SELENOMETHIONINE MODRES 3OP4 MSE B 245 MET SELENOMETHIONINE MODRES 3OP4 MSE B 247 MET SELENOMETHIONINE HET MSE A 5 16 HET MSE A 60 8 HET MSE A 100 13 HET MSE A 102 8 HET MSE A 111 16 HET MSE A 129 8 HET MSE A 130 8 HET MSE A 147 8 HET MSE A 169 16 HET MSE A 192 8 HET MSE A 245 8 HET MSE A 247 8 HET MSE B 5 13 HET MSE B 60 8 HET MSE B 100 13 HET MSE B 102 8 HET MSE B 111 8 HET MSE B 129 8 HET MSE B 130 13 HET MSE B 147 8 HET MSE B 169 13 HET MSE B 192 8 HET MSE B 245 8 HET MSE B 247 8 HET NAP A 249 48 HET ACT A 250 4 HET NAP B 249 48 HET ACT B 250 4 HETNAM MSE SELENOMETHIONINE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM ACT ACETATE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 1 MSE 24(C5 H11 N O2 SE) FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 7 HOH *503(H2 O) HELIX 1 1 ARG A 19 ARG A 32 1 14 HELIX 2 2 SER A 42 GLY A 54 1 13 HELIX 3 3 ASN A 66 GLY A 82 1 17 HELIX 4 4 LEU A 98 MSE A 102 5 5 HELIX 5 5 LYS A 103 LEU A 115 1 13 HELIX 6 6 LEU A 115 ARG A 133 1 19 HELIX 7 7 SER A 142 GLY A 148 1 7 HELIX 8 8 GLN A 152 ALA A 174 1 23 HELIX 9 9 ASN A 197 GLN A 207 1 11 HELIX 10 10 ASP A 215 SER A 228 1 14 HELIX 11 11 PRO A 229 ALA A 232 5 4 HELIX 12 12 ARG B 19 ARG B 32 1 14 HELIX 13 13 SER B 42 GLY B 54 1 13 HELIX 14 14 ASN B 66 PHE B 81 1 16 HELIX 15 15 LEU B 98 MSE B 102 5 5 HELIX 16 16 LYS B 103 LEU B 115 1 13 HELIX 17 17 LEU B 115 ARG B 133 1 19 HELIX 18 18 SER B 142 GLY B 148 1 7 HELIX 19 19 GLN B 152 ALA B 174 1 23 HELIX 20 20 THR B 190 ALA B 195 1 6 HELIX 21 21 ASN B 197 GLN B 207 1 11 HELIX 22 22 ASP B 215 SER B 228 1 14 HELIX 23 23 PRO B 229 ALA B 232 5 4 SHEET 1 A 7 GLY A 57 ALA A 61 0 SHEET 2 A 7 LYS A 35 ALA A 40 1 N VAL A 36 O LYS A 58 SHEET 3 A 7 VAL A 11 VAL A 14 1 N ALA A 12 O ILE A 37 SHEET 4 A 7 ILE A 86 ASN A 89 1 O VAL A 88 N LEU A 13 SHEET 5 A 7 GLY A 135 VAL A 140 1 O ILE A 138 N LEU A 87 SHEET 6 A 7 VAL A 178 PRO A 185 1 O VAL A 183 N ASN A 139 SHEET 7 A 7 THR A 238 VAL A 241 1 O LEU A 239 N THR A 182 SHEET 1 B 7 GLY B 57 ALA B 61 0 SHEET 2 B 7 LYS B 35 ALA B 40 1 N VAL B 36 O LYS B 58 SHEET 3 B 7 VAL B 11 VAL B 14 1 N ALA B 12 O LYS B 35 SHEET 4 B 7 ILE B 86 ASN B 89 1 O VAL B 88 N LEU B 13 SHEET 5 B 7 GLY B 135 VAL B 140 1 O ILE B 138 N LEU B 87 SHEET 6 B 7 VAL B 178 PRO B 185 1 O ASN B 181 N ASN B 139 SHEET 7 B 7 THR B 238 VAL B 241 1 O LEU B 239 N THR B 182 LINK C PHE A 4 N AMSE A 5 1555 1555 1.33 LINK C PHE A 4 N BMSE A 5 1555 1555 1.33 LINK C AMSE A 5 N ASN A 6 1555 1555 1.31 LINK C BMSE A 5 N ASN A 6 1555 1555 1.32 LINK C GLY A 59 N MSE A 60 1555 1555 1.33 LINK C MSE A 60 N ALA A 61 1555 1555 1.33 LINK C LEU A 99 N MSE A 100 1555 1555 1.33 LINK C MSE A 100 N ARG A 101 1555 1555 1.33 LINK C ARG A 101 N MSE A 102 1555 1555 1.33 LINK C MSE A 102 N LYS A 103 1555 1555 1.32 LINK C ILE A 110 N AMSE A 111 1555 1555 1.34 LINK C ILE A 110 N BMSE A 111 1555 1555 1.33 LINK C AMSE A 111 N AGLU A 112 1555 1555 1.33 LINK C BMSE A 111 N BGLU A 112 1555 1555 1.32 LINK C GLY A 128 N MSE A 129 1555 1555 1.32 LINK C MSE A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N LYS A 131 1555 1555 1.34 LINK C THR A 146 N MSE A 147 1555 1555 1.33 LINK C MSE A 147 N GLY A 148 1555 1555 1.32 LINK C SER A 168 N AMSE A 169 1555 1555 1.33 LINK C SER A 168 N BMSE A 169 1555 1555 1.33 LINK C AMSE A 169 N ALA A 170 1555 1555 1.34 LINK C BMSE A 169 N ALA A 170 1555 1555 1.33 LINK C ASP A 191 N MSE A 192 1555 1555 1.34 LINK C MSE A 192 N THR A 193 1555 1555 1.33 LINK C GLY A 244 N MSE A 245 1555 1555 1.33 LINK C MSE A 245 N TYR A 246 1555 1555 1.34 LINK C TYR A 246 N MSE A 247 1555 1555 1.34 LINK C MSE A 247 N ILE A 248 1555 1555 1.32 LINK C PHE B 4 N MSE B 5 1555 1555 1.34 LINK C MSE B 5 N ASN B 6 1555 1555 1.31 LINK C GLY B 59 N MSE B 60 1555 1555 1.34 LINK C MSE B 60 N ALA B 61 1555 1555 1.32 LINK C LEU B 99 N MSE B 100 1555 1555 1.32 LINK C MSE B 100 N ARG B 101 1555 1555 1.34 LINK C ARG B 101 N MSE B 102 1555 1555 1.33 LINK C MSE B 102 N LYS B 103 1555 1555 1.32 LINK C ILE B 110 N MSE B 111 1555 1555 1.33 LINK C MSE B 111 N GLU B 112 1555 1555 1.31 LINK C GLY B 128 N MSE B 129 1555 1555 1.33 LINK C MSE B 129 N MSE B 130 1555 1555 1.34 LINK C MSE B 130 N LYS B 131 1555 1555 1.33 LINK C THR B 146 N MSE B 147 1555 1555 1.33 LINK C MSE B 147 N GLY B 148 1555 1555 1.32 LINK C SER B 168 N MSE B 169 1555 1555 1.32 LINK C MSE B 169 N ALA B 170 1555 1555 1.34 LINK C ASP B 191 N MSE B 192 1555 1555 1.34 LINK C MSE B 192 N THR B 193 1555 1555 1.34 LINK C GLY B 244 N MSE B 245 1555 1555 1.32 LINK C MSE B 245 N TYR B 246 1555 1555 1.33 LINK C TYR B 246 N MSE B 247 1555 1555 1.33 LINK C MSE B 247 N ILE B 248 1555 1555 1.33 SITE 1 AC1 37 GLY A 16 SER A 18 ARG A 19 GLY A 20 SITE 2 AC1 37 ILE A 21 THR A 41 LEU A 62 ASN A 63 SITE 3 AC1 37 VAL A 64 ASN A 90 ALA A 91 GLY A 92 SITE 4 AC1 37 ILE A 93 VAL A 140 GLY A 141 SER A 142 SITE 5 AC1 37 TYR A 155 LYS A 159 PRO A 185 GLY A 186 SITE 6 AC1 37 PHE A 187 ILE A 188 THR A 190 MSE A 192 SITE 7 AC1 37 THR A 193 ACT A 250 HOH A 262 HOH A 275 SITE 8 AC1 37 HOH A 281 HOH A 282 HOH A 298 HOH A 322 SITE 9 AC1 37 HOH A 331 HOH A 407 HOH A 408 HOH A 432 SITE 10 AC1 37 HOH A 494 SITE 1 AC2 6 SER A 142 TYR A 155 PHE A 187 NAP A 249 SITE 2 AC2 6 HOH A 567 HOH A 595 SITE 1 AC3 31 GLY B 16 SER B 18 ARG B 19 ILE B 21 SITE 2 AC3 31 THR B 41 LEU B 62 ASN B 63 VAL B 64 SITE 3 AC3 31 ASN B 90 ALA B 91 VAL B 140 GLY B 141 SITE 4 AC3 31 TYR B 155 LYS B 159 PRO B 185 GLY B 186 SITE 5 AC3 31 ILE B 188 THR B 190 MSE B 192 ACT B 250 SITE 6 AC3 31 HOH B 282 HOH B 285 HOH B 294 HOH B 305 SITE 7 AC3 31 HOH B 333 HOH B 336 HOH B 366 HOH B 419 SITE 8 AC3 31 HOH B 431 HOH B 459 HOH B 588 SITE 1 AC4 6 SER B 142 TYR B 155 PHE B 187 NAP B 249 SITE 2 AC4 6 HOH B 320 HOH B 608 CRYST1 71.058 104.095 126.070 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014073 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009607 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007932 0.00000