HEADER TRANSFERASE 31-AUG-10 3OP7 TITLE CRYSTAL STRUCTURE OF A PLP-DEPENDENT AMINOTRANSFERASE (ZP_03625122.1) TITLE 2 FROM STREPTOCOCCUS SUIS 89-1591 AT 1.70 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOTRANSFERASE CLASS I AND II; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SUIS 89/1591; SOURCE 3 ORGANISM_TAXID: 286604; SOURCE 4 GENE: SSUIDRAFT_2941; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PLP-DEPENDENT TRANSFERASE, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 01-FEB-23 3OP7 1 REMARK SEQADV LINK REVDAT 2 20-JUL-11 3OP7 1 KEYWDS REVDAT 1 15-SEP-10 3OP7 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PLP-DEPENDENT AMINOTRANSFERASE JRNL TITL 2 (ZP_03625122.1) FROM STREPTOCOCCUS SUIS 89-1591 AT 1.70 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2423 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3300 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 192 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2967 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.69000 REMARK 3 B22 (A**2) : -1.69000 REMARK 3 B33 (A**2) : 3.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.150 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3187 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2130 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4351 ; 1.671 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5225 ; 0.984 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 6.155 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;33.671 ;24.967 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 547 ;13.995 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;19.350 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 484 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3533 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 619 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1900 ; 0.831 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 768 ; 0.272 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3095 ; 1.380 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1287 ; 2.344 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1240 ; 3.651 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 371 REMARK 3 ORIGIN FOR THE GROUP (A): 29.5110 28.9000 16.4070 REMARK 3 T TENSOR REMARK 3 T11: 0.1793 T22: 0.1140 REMARK 3 T33: 0.0143 T12: -0.0185 REMARK 3 T13: 0.0279 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 0.9197 L22: 1.4170 REMARK 3 L33: 1.2996 L12: 0.4003 REMARK 3 L13: -0.2521 L23: -0.3286 REMARK 3 S TENSOR REMARK 3 S11: 0.0948 S12: -0.1602 S13: 0.0801 REMARK 3 S21: 0.3108 S22: -0.0408 S23: 0.1118 REMARK 3 S31: -0.0716 S32: 0.0356 S33: -0.0540 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 6. SULFATE (SO4) AND 1,2-ETHANEDIOL (EDO) REMARK 3 MOLECULES FROM THE CRYSTALLIZATION/CRYOPROTECTION SOLUTION ARE REMARK 3 MODELED. 7. RESIDUE LYSINE 221 IS COVALENTLY ATTACHED TO REMARK 3 PYRIDOXAL-5'-PHOSPHATE VIA SCHIFF BASE LINKAGE AND IS MODELED AS REMARK 3 LLP. 8. AN UNKNOWN LIGAND (UNL) HAS BEEN MODELED NEAR RESIDUE REMARK 3 LLP 221. THE UNL RESEMBLES PYRIDOXAMINE (PXM), A POSSIBLE REMARK 3 REACTION PRODUCT OF THE ENZYME. REMARK 4 REMARK 4 3OP7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061399. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97905 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47906 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 29.748 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.92000 REMARK 200 R SYM FOR SHELL (I) : 0.92000 REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.20M LITHIUM SULFATE, 2.00M AMMONIUM REMARK 280 SULFATE, ADDITIVE: 0.001M PYRIDOXAL 5'-PHOSPHATE (PLP), NANODROP, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.62200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.75900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.75900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.31100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.75900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.75900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.93300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.75900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.75900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 22.31100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.75900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.75900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.93300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 44.62200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER REMARK 300 AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 372 REMARK 465 GLU A 373 REMARK 465 ASN A 374 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 136 CG CD OE1 OE2 REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 ARG A 368 CD NE CZ NH1 NH2 REMARK 470 ARG A 369 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 237 O HOH A 433 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 58 CE1 TYR A 58 CZ -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 29 112.90 -19.89 REMARK 500 LEU A 56 55.95 -90.61 REMARK 500 MSE A 251 -31.04 -144.44 REMARK 500 ILE A 252 -61.89 64.15 REMARK 500 ALA A 350 32.35 -95.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391485 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3OP7 A 1 374 UNP B9WVA1 B9WVA1_STRSU 1 374 SEQADV 3OP7 GLY A 0 UNP B9WVA1 EXPRESSION TAG SEQRES 1 A 375 GLY MSE LYS LEU PRO ARG PHE GLY VAL GLU GLU TRP LEU SEQRES 2 A 375 ASN VAL HIS GLU ASN SER ALA ILE TYR ASP ILE ALA GLY SEQRES 3 A 375 VAL SER ILE SER SER LEU THR LEU GLU GLU LEU PHE ALA SEQRES 4 A 375 LEU SER GLY THR ASN PRO GLU ASP PHE TYR LYS LYS LEU SEQRES 5 A 375 GLN GLY THR LYS LEU ASN TYR GLY TRP ILE GLU GLY SER SEQRES 6 A 375 PRO ALA PHE LYS LYS SER VAL SER GLN LEU TYR THR GLY SEQRES 7 A 375 VAL LYS PRO GLU GLN ILE LEU GLN THR ASN GLY ALA THR SEQRES 8 A 375 GLY ALA ASN LEU LEU VAL LEU TYR SER LEU ILE GLU PRO SEQRES 9 A 375 GLY ASP HIS VAL ILE SER LEU TYR PRO THR TYR GLN GLN SEQRES 10 A 375 LEU TYR ASP ILE PRO LYS SER LEU GLY ALA GLU VAL ASP SEQRES 11 A 375 LEU TRP GLN ILE GLU GLU GLU ASN GLY TRP LEU PRO ASP SEQRES 12 A 375 LEU GLU LYS LEU ARG GLN LEU ILE ARG PRO THR THR LYS SEQRES 13 A 375 MSE ILE CYS ILE ASN ASN ALA ASN ASN PRO THR GLY ALA SEQRES 14 A 375 VAL MSE ASP ARG THR TYR LEU GLU GLU LEU VAL GLU ILE SEQRES 15 A 375 ALA SER GLU VAL GLY ALA TYR ILE LEU SER ASP GLU VAL SEQRES 16 A 375 TYR ARG SER PHE SER GLU LEU ASP VAL PRO SER ILE ILE SEQRES 17 A 375 GLU VAL TYR ASP LYS GLY ILE ALA VAL ASN SER LEU SER SEQRES 18 A 375 LLP THR TYR SER LEU PRO GLY ILE ARG ILE GLY TRP VAL SEQRES 19 A 375 ALA ALA ASN HIS GLN VAL THR ASP ILE LEU ARG ASP TYR SEQRES 20 A 375 ARG ASP TYR THR MSE ILE CYS ALA GLY VAL PHE ASP ASP SEQRES 21 A 375 LEU VAL ALA GLN LEU ALA LEU ALA HIS TYR GLN GLU ILE SEQRES 22 A 375 LEU GLU ARG ASN ARG HIS ILE LEU GLU GLU ASN LEU ALA SEQRES 23 A 375 ILE LEU ASP GLN TRP ILE GLU GLU GLU PRO LEU VAL SER SEQRES 24 A 375 TYR ILE ARG PRO ALA VAL VAL SER THR SER PHE VAL LYS SEQRES 25 A 375 ILE ALA VAL ASP MSE PRO MSE GLU ASP PHE CYS LEU GLN SEQRES 26 A 375 LEU LEU GLN GLU HIS GLY VAL LEU LEU VAL PRO GLY ASN SEQRES 27 A 375 ARG PHE GLU ARG ASP GLY TYR VAL ARG LEU GLY PHE ALA SEQRES 28 A 375 CYS GLU GLN GLU THR LEU ILE LYS GLY LEU GLU LYS LEU SEQRES 29 A 375 SER GLN PHE LEU ARG ARG PHE ASP LYS GLU ASN MODRES 3OP7 MSE A 1 MET SELENOMETHIONINE MODRES 3OP7 MSE A 156 MET SELENOMETHIONINE MODRES 3OP7 MSE A 170 MET SELENOMETHIONINE MODRES 3OP7 LLP A 221 LYS MODRES 3OP7 MSE A 251 MET SELENOMETHIONINE MODRES 3OP7 MSE A 316 MET SELENOMETHIONINE MODRES 3OP7 MSE A 318 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 156 8 HET MSE A 170 8 HET LLP A 221 24 HET MSE A 251 8 HET MSE A 316 8 HET MSE A 318 8 HET UNL A 390 12 HET SO4 A 400 5 HET SO4 A 401 5 HET SO4 A 402 5 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HETNAM MSE SELENOMETHIONINE HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM UNL UNKNOWN LIGAND HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 EDO 6(C2 H6 O2) FORMUL 12 HOH *277(H2 O) HELIX 1 1 PHE A 6 GLU A 16 1 11 HELIX 2 2 ASN A 17 ALA A 19 5 3 HELIX 3 3 THR A 32 GLY A 41 1 10 HELIX 4 4 ASN A 43 GLY A 53 1 11 HELIX 5 5 SER A 64 GLN A 73 1 10 HELIX 6 6 LYS A 79 GLU A 81 5 3 HELIX 7 7 ASN A 87 ILE A 101 1 15 HELIX 8 8 GLN A 115 LEU A 124 1 10 HELIX 9 9 GLU A 134 GLY A 138 5 5 HELIX 10 10 ASP A 142 ILE A 150 1 9 HELIX 11 11 ASP A 171 GLU A 184 1 14 HELIX 12 12 SER A 205 TYR A 210 1 6 HELIX 13 13 LEU A 225 ARG A 229 5 5 HELIX 14 14 ASN A 236 ARG A 244 1 9 HELIX 15 15 GLY A 255 HIS A 268 1 14 HELIX 16 16 HIS A 268 GLU A 294 1 27 HELIX 17 17 PRO A 317 GLY A 330 1 14 HELIX 18 18 ASN A 337 GLU A 340 5 4 HELIX 19 19 GLU A 352 ARG A 368 1 17 HELIX 20 20 ARG A 369 ASP A 371 5 3 SHEET 1 A 2 TYR A 21 ASP A 22 0 SHEET 2 A 2 VAL A 331 LEU A 332 1 O LEU A 332 N TYR A 21 SHEET 1 B 7 ILE A 83 THR A 86 0 SHEET 2 B 7 GLY A 231 ALA A 234 -1 O GLY A 231 N THR A 86 SHEET 3 B 7 GLY A 213 SER A 218 -1 N ALA A 215 O ALA A 234 SHEET 4 B 7 TYR A 188 ASP A 192 1 N SER A 191 O ILE A 214 SHEET 5 B 7 MSE A 156 ASN A 160 1 N ILE A 159 O LEU A 190 SHEET 6 B 7 HIS A 106 TYR A 111 1 N ILE A 108 O CYS A 158 SHEET 7 B 7 GLU A 127 GLN A 132 1 O TRP A 131 N SER A 109 SHEET 1 C 4 VAL A 297 TYR A 299 0 SHEET 2 C 4 SER A 308 ILE A 312 -1 O LYS A 311 N SER A 298 SHEET 3 C 4 TYR A 344 LEU A 347 -1 O VAL A 345 N VAL A 310 SHEET 4 C 4 VAL A 334 PRO A 335 -1 N VAL A 334 O ARG A 346 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N LYS A 2 1555 1555 1.32 LINK C LYS A 155 N MSE A 156 1555 1555 1.34 LINK C MSE A 156 N ILE A 157 1555 1555 1.34 LINK C VAL A 169 N MSE A 170 1555 1555 1.33 LINK C MSE A 170 N ASP A 171 1555 1555 1.31 LINK C LLP A 221 N THR A 222 1555 1555 1.32 LINK C THR A 250 N MSE A 251 1555 1555 1.35 LINK C MSE A 251 N ILE A 252 1555 1555 1.34 LINK C ASP A 315 N MSE A 316 1555 1555 1.33 LINK C MSE A 316 N PRO A 317 1555 1555 1.34 LINK C PRO A 317 N MSE A 318 1555 1555 1.33 LINK C MSE A 318 N GLU A 319 1555 1555 1.33 CISPEP 1 TYR A 111 PRO A 112 0 -12.59 CISPEP 2 ASN A 161 ALA A 162 0 -4.71 CISPEP 3 ASN A 164 PRO A 165 0 22.90 SITE 1 AC1 7 SER A 30 LYS A 55 ASN A 57 HOH A 510 SITE 2 AC1 7 HOH A 580 HOH A 636 HOH A 643 SITE 1 AC2 10 ASN A 57 ARG A 151 PRO A 152 THR A 153 SITE 2 AC2 10 HOH A 448 HOH A 478 HOH A 623 HOH A 624 SITE 3 AC2 10 HOH A 641 HOH A 644 SITE 1 AC3 4 GLU A 134 GLU A 135 GLU A 136 HOH A 514 SITE 1 AC4 5 GLY A 138 ALA A 168 VAL A 169 HOH A 513 SITE 2 AC4 5 HOH A 622 SITE 1 AC5 5 TYR A 75 ARG A 196 HOH A 409 HOH A 419 SITE 2 AC5 5 HOH A 631 SITE 1 AC6 4 GLY A 59 ILE A 61 PRO A 152 GLU A 184 SITE 1 AC7 3 ARG A 196 GLU A 274 ARG A 277 SITE 1 AC8 7 PRO A 65 PRO A 80 ARG A 147 GLU A 180 SITE 2 AC8 7 GLU A 184 HOH A 597 HOH A 677 SITE 1 AC9 5 THR A 76 ARG A 172 GLU A 208 HOH A 588 SITE 2 AC9 5 HOH A 607 CRYST1 97.518 97.518 89.244 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010255 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011205 0.00000