HEADER CHAPERONE 31-AUG-10 3OPD
TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF AN HSP90 FROM
TITLE 2 TRYPANOSOMA BRUCEI, TB10.26.1080 IN THE PRESENCE OF A BENZAMIDE
TITLE 3 DERIVATIVE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HEAT SHOCK PROTEIN 83;
COMPND 3 CHAIN: A, B, C;
COMPND 4 FRAGMENT: N-TERMINAL DOMAIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI;
SOURCE 3 ORGANISM_TAXID: 5702;
SOURCE 4 GENE: HSP83, TB10.26.1080;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15
KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, CHAPERONE,
KEYWDS 2 ATP BINDING
EXPDTA X-RAY DIFFRACTION
AUTHOR J.C.PIZARRO,A.K.WERNIMONT,A.HUTCHINSON,H.SULLIVAN,K.CHAMBERLAIN,
AUTHOR 2 J.WEADGE,D.COSSAR,Y.LI,I.KOZIERADZKI,A.BOCHKAREV,C.H.ARROWSMITH,
AUTHOR 3 A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,P.G.WYATT,A.H.FAIRLAMB,C.MACKENZIE,
AUTHOR 4 M.A.J.FERGUSON,R.HUI,T.HILLS,STRUCTURAL GENOMICS CONSORTIUM (SGC)
REVDAT 3 06-SEP-23 3OPD 1 REMARK SEQADV
REVDAT 2 29-NOV-17 3OPD 1 JRNL
REVDAT 1 13-OCT-10 3OPD 0
JRNL AUTH J.C.PIZARRO,T.HILLS,G.SENISTERRA,A.K.WERNIMONT,C.MACKENZIE,
JRNL AUTH 2 N.R.NORCROSS,M.A.FERGUSON,P.G.WYATT,I.H.GILBERT,R.HUI
JRNL TITL EXPLORING THE TRYPANOSOMA BRUCEI HSP83 POTENTIAL AS A TARGET
JRNL TITL 2 FOR STRUCTURE GUIDED DRUG DESIGN.
JRNL REF PLOS NEGL TROP DIS V. 7 E2492 2013
JRNL REFN ESSN 1935-2735
JRNL PMID 24147171
JRNL DOI 10.1371/JOURNAL.PNTD.0002492
REMARK 2
REMARK 2 RESOLUTION. 2.60 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.8.0
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.85
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : NULL
REMARK 3 NUMBER OF REFLECTIONS : 24658
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.189
REMARK 3 R VALUE (WORKING SET) : 0.186
REMARK 3 FREE R VALUE : 0.247
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090
REMARK 3 FREE R VALUE TEST SET COUNT : 1255
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 12
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.71
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2946
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2354
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2797
REMARK 3 BIN R VALUE (WORKING SET) : 0.2325
REMARK 3 BIN FREE R VALUE : 0.2901
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.06
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 149
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 4629
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 99
REMARK 3 SOLVENT ATOMS : 359
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 60.61
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.35
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 9.31580
REMARK 3 B22 (A**2) : -8.03330
REMARK 3 B33 (A**2) : -1.28240
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.345
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 4818 ; 2.000 ; NULL
REMARK 3 BOND ANGLES : 6545 ; 2.000 ; NULL
REMARK 3 TORSION ANGLES : 1622 ; 2.000 ; NULL
REMARK 3 TRIGONAL CARBON PLANES : 145 ; 2.000 ; NULL
REMARK 3 GENERAL PLANES : 737 ; 5.000 ; NULL
REMARK 3 ISOTROPIC THERMAL FACTORS : 4818 ; 20.000 ; NULL
REMARK 3 BAD NON-BONDED CONTACTS : 4 ; 5.000 ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 673 ; 5.000 ; NULL
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 5675 ; 4.000 ; NULL
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.19
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.72
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.78
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 3
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|0 - A|162 A|165 - A|209 }
REMARK 3 ORIGIN FOR THE GROUP (A): 1.0664 21.3901 8.0081
REMARK 3 T TENSOR
REMARK 3 T11: -0.1639 T22: 0.0382
REMARK 3 T33: -0.1310 T12: 0.0171
REMARK 3 T13: -0.0213 T23: -0.0565
REMARK 3 L TENSOR
REMARK 3 L11: 2.3478 L22: 1.5585
REMARK 3 L33: 1.7448 L12: -0.6502
REMARK 3 L13: -0.6713 L23: 0.5686
REMARK 3 S TENSOR
REMARK 3 S11: 0.1105 S12: 0.2501 S13: 0.0070
REMARK 3 S21: -0.0306 S22: -0.0019 S23: -0.1051
REMARK 3 S31: -0.0029 S32: -0.0529 S33: -0.1085
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|0 - B|161 B|166 - B|208 }
REMARK 3 ORIGIN FOR THE GROUP (A): -8.2988 9.2272 40.3013
REMARK 3 T TENSOR
REMARK 3 T11: -0.0390 T22: -0.0518
REMARK 3 T33: -0.2110 T12: 0.0678
REMARK 3 T13: -0.0217 T23: 0.0632
REMARK 3 L TENSOR
REMARK 3 L11: 2.0500 L22: 3.1482
REMARK 3 L33: 2.7459 L12: 1.0258
REMARK 3 L13: -1.1520 L23: -2.3485
REMARK 3 S TENSOR
REMARK 3 S11: 0.0366 S12: -0.0756 S13: 0.1038
REMARK 3 S21: 0.5144 S22: 0.1866 S23: 0.0603
REMARK 3 S31: -0.3740 S32: -0.0798 S33: -0.2232
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { C|1 - C|54 C|59 - C|196 C|200 - C|209 }
REMARK 3 ORIGIN FOR THE GROUP (A): -31.1063 43.4560 21.9320
REMARK 3 T TENSOR
REMARK 3 T11: -0.1617 T22: -0.0900
REMARK 3 T33: -0.0442 T12: 0.0881
REMARK 3 T13: 0.0810 T23: 0.0327
REMARK 3 L TENSOR
REMARK 3 L11: 3.5497 L22: 1.3380
REMARK 3 L33: 2.8574 L12: -0.1894
REMARK 3 L13: -1.0696 L23: 0.5153
REMARK 3 S TENSOR
REMARK 3 S11: 0.2592 S12: 0.2138 S13: 0.5442
REMARK 3 S21: -0.0588 S22: -0.0280 S23: 0.1058
REMARK 3 S31: -0.1743 S32: -0.4007 S33: -0.2311
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 3OPD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-10.
REMARK 100 THE DEPOSITION ID IS D_1000061405.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 24-JUN-10
REMARK 200 TEMPERATURE (KELVIN) : NULL
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : MIRRORS
REMARK 200
REMARK 200 DETECTOR TYPE : IMAGE PLATE
REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24726
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600
REMARK 200 RESOLUTION RANGE LOW (A) : 29.600
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : 0.05800
REMARK 200 R SYM (I) : 0.06780
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 112.6000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 3H80
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 50.29
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE 2% PEG400 0.1M
REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.45750
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.07350
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.05150
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.07350
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.45750
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.05150
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2, 3
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 3
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -17
REMARK 465 HIS A -16
REMARK 465 HIS A -15
REMARK 465 HIS A -14
REMARK 465 HIS A -13
REMARK 465 HIS A -12
REMARK 465 HIS A -11
REMARK 465 SER A -10
REMARK 465 SER A -9
REMARK 465 GLY A -8
REMARK 465 ARG A -7
REMARK 465 GLU A -6
REMARK 465 ASN A -5
REMARK 465 LEU A -4
REMARK 465 TYR A -3
REMARK 465 PHE A -2
REMARK 465 GLN A -1
REMARK 465 CYS A 163
REMARK 465 ASP A 164
REMARK 465 THR A 210
REMARK 465 THR A 211
REMARK 465 GLU A 212
REMARK 465 LYS A 213
REMARK 465 MET B -17
REMARK 465 HIS B -16
REMARK 465 HIS B -15
REMARK 465 HIS B -14
REMARK 465 HIS B -13
REMARK 465 HIS B -12
REMARK 465 HIS B -11
REMARK 465 SER B -10
REMARK 465 SER B -9
REMARK 465 GLY B -8
REMARK 465 ARG B -7
REMARK 465 GLU B -6
REMARK 465 ASN B -5
REMARK 465 LEU B -4
REMARK 465 TYR B -3
REMARK 465 PHE B -2
REMARK 465 GLN B -1
REMARK 465 ASP B 162
REMARK 465 CYS B 163
REMARK 465 ASP B 164
REMARK 465 LEU B 165
REMARK 465 ASN B 209
REMARK 465 THR B 210
REMARK 465 THR B 211
REMARK 465 GLU B 212
REMARK 465 LYS B 213
REMARK 465 MET C -17
REMARK 465 HIS C -16
REMARK 465 HIS C -15
REMARK 465 HIS C -14
REMARK 465 HIS C -13
REMARK 465 HIS C -12
REMARK 465 HIS C -11
REMARK 465 SER C -10
REMARK 465 SER C -9
REMARK 465 GLY C -8
REMARK 465 ARG C -7
REMARK 465 GLU C -6
REMARK 465 ASN C -5
REMARK 465 LEU C -4
REMARK 465 TYR C -3
REMARK 465 PHE C -2
REMARK 465 GLN C -1
REMARK 465 GLY C 0
REMARK 465 LEU C 55
REMARK 465 GLY C 56
REMARK 465 ASP C 57
REMARK 465 GLU C 58
REMARK 465 GLU C 197
REMARK 465 PHE C 198
REMARK 465 ILE C 199
REMARK 465 THR C 210
REMARK 465 THR C 211
REMARK 465 GLU C 212
REMARK 465 LYS C 213
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 SER A 35 OG
REMARK 470 GLN A 52 CG CD OE1 NE2
REMARK 470 ASP A 57 CG OD1 OD2
REMARK 470 GLU A 141 CG CD OE1 OE2
REMARK 470 ASP A 162 CG OD1 OD2
REMARK 470 LYS A 166 CG CD CE NZ
REMARK 470 GLU A 177 CG CD OE1 OE2
REMARK 470 LYS A 193 CG CD CE NZ
REMARK 470 GLU A 197 CG CD OE1 OE2
REMARK 470 GLU A 208 CG CD OE1 OE2
REMARK 470 MET B 1 CG SD CE
REMARK 470 PHE B 5 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 GLU B 10 CG CD OE1 OE2
REMARK 470 LYS B 43 CG CD CE NZ
REMARK 470 GLN B 52 CG CD OE1 NE2
REMARK 470 ASP B 57 CG OD1 OD2
REMARK 470 ARG B 69 CD NE CZ NH1 NH2
REMARK 470 VAL B 89 CG1 CG2
REMARK 470 ILE B 95 CG1 CG2 CD1
REMARK 470 LYS B 101 CG CD CE NZ
REMARK 470 GLU B 108 CG CD OE1 OE2
REMARK 470 GLU B 141 CG CD OE1 OE2
REMARK 470 ASP B 143 CG OD1 OD2
REMARK 470 THR B 160 OG1 CG2
REMARK 470 LYS B 166 CG CD CE NZ
REMARK 470 GLU B 177 CG CD OE1 OE2
REMARK 470 ARG B 186 CG CD NE CZ NH1 NH2
REMARK 470 LYS B 189 CG CD CE NZ
REMARK 470 LYS B 193 CG CD CE NZ
REMARK 470 LYS B 194 CG CD CE NZ
REMARK 470 SER B 196 OG
REMARK 470 GLU B 197 CG CD OE1 OE2
REMARK 470 ILE B 199 CG1 CG2 CD1
REMARK 470 ASP B 202 CG OD1 OD2
REMARK 470 MET B 206 CG SD CE
REMARK 470 VAL B 207 CG1 CG2
REMARK 470 GLU B 208 CG CD OE1 OE2
REMARK 470 MET C 1 CG SD CE
REMARK 470 ARG C 31 CG CD NE CZ NH1 NH2
REMARK 470 LYS C 43 CG CD CE NZ
REMARK 470 ILE C 44 CG1 CG2 CD1
REMARK 470 GLN C 47 CG CD OE1 NE2
REMARK 470 SER C 48 OG
REMARK 470 LEU C 49 CG CD1 CD2
REMARK 470 THR C 50 OG1 CG2
REMARK 470 ASN C 51 CG OD1 ND2
REMARK 470 GLN C 52 CG CD OE1 NE2
REMARK 470 SER C 53 OG
REMARK 470 VAL C 54 CG1 CG2
REMARK 470 HIS C 60 CG ND1 CD2 CE1 NE2
REMARK 470 GLU C 141 CG CD OE1 OE2
REMARK 470 CYS C 163 SG
REMARK 470 ASP C 164 CG OD1 OD2
REMARK 470 LEU C 165 CG CD1 CD2
REMARK 470 LYS C 166 CG CD CE NZ
REMARK 470 GLU C 177 CG CD OE1 OE2
REMARK 470 LYS C 189 CG CD CE NZ
REMARK 470 LYS C 193 CG CD CE NZ
REMARK 470 LYS C 194 CG CD CE NZ
REMARK 470 SER C 196 OG
REMARK 470 VAL C 207 CG1 CG2
REMARK 470 GLU C 208 CG CD OE1 OE2
REMARK 470 ASN C 209 CG OD1 ND2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 25 48.42 -83.36
REMARK 500 ALA A 151 -148.29 69.64
REMARK 500 GLU B 58 78.94 -119.13
REMARK 500 SER B 79 40.10 -102.54
REMARK 500 ALA B 151 -146.43 66.93
REMARK 500 ARG B 167 145.19 168.30
REMARK 500 ASN C 25 49.03 -85.05
REMARK 500 SER C 79 41.64 -101.59
REMARK 500 ALA C 151 -148.80 67.80
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HIE A 214
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HIE B 214
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HIE C 214
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3O6O RELATED DB: PDB
REMARK 900 RELATED ID: 3OMU RELATED DB: PDB
DBREF 3OPD A 1 213 UNP P12861 HSP83_TRYBB 1 213
DBREF 3OPD B 1 213 UNP P12861 HSP83_TRYBB 1 213
DBREF 3OPD C 1 213 UNP P12861 HSP83_TRYBB 1 213
SEQADV 3OPD MET A -17 UNP P12861 EXPRESSION TAG
SEQADV 3OPD HIS A -16 UNP P12861 EXPRESSION TAG
SEQADV 3OPD HIS A -15 UNP P12861 EXPRESSION TAG
SEQADV 3OPD HIS A -14 UNP P12861 EXPRESSION TAG
SEQADV 3OPD HIS A -13 UNP P12861 EXPRESSION TAG
SEQADV 3OPD HIS A -12 UNP P12861 EXPRESSION TAG
SEQADV 3OPD HIS A -11 UNP P12861 EXPRESSION TAG
SEQADV 3OPD SER A -10 UNP P12861 EXPRESSION TAG
SEQADV 3OPD SER A -9 UNP P12861 EXPRESSION TAG
SEQADV 3OPD GLY A -8 UNP P12861 EXPRESSION TAG
SEQADV 3OPD ARG A -7 UNP P12861 EXPRESSION TAG
SEQADV 3OPD GLU A -6 UNP P12861 EXPRESSION TAG
SEQADV 3OPD ASN A -5 UNP P12861 EXPRESSION TAG
SEQADV 3OPD LEU A -4 UNP P12861 EXPRESSION TAG
SEQADV 3OPD TYR A -3 UNP P12861 EXPRESSION TAG
SEQADV 3OPD PHE A -2 UNP P12861 EXPRESSION TAG
SEQADV 3OPD GLN A -1 UNP P12861 EXPRESSION TAG
SEQADV 3OPD GLY A 0 UNP P12861 EXPRESSION TAG
SEQADV 3OPD MET B -17 UNP P12861 EXPRESSION TAG
SEQADV 3OPD HIS B -16 UNP P12861 EXPRESSION TAG
SEQADV 3OPD HIS B -15 UNP P12861 EXPRESSION TAG
SEQADV 3OPD HIS B -14 UNP P12861 EXPRESSION TAG
SEQADV 3OPD HIS B -13 UNP P12861 EXPRESSION TAG
SEQADV 3OPD HIS B -12 UNP P12861 EXPRESSION TAG
SEQADV 3OPD HIS B -11 UNP P12861 EXPRESSION TAG
SEQADV 3OPD SER B -10 UNP P12861 EXPRESSION TAG
SEQADV 3OPD SER B -9 UNP P12861 EXPRESSION TAG
SEQADV 3OPD GLY B -8 UNP P12861 EXPRESSION TAG
SEQADV 3OPD ARG B -7 UNP P12861 EXPRESSION TAG
SEQADV 3OPD GLU B -6 UNP P12861 EXPRESSION TAG
SEQADV 3OPD ASN B -5 UNP P12861 EXPRESSION TAG
SEQADV 3OPD LEU B -4 UNP P12861 EXPRESSION TAG
SEQADV 3OPD TYR B -3 UNP P12861 EXPRESSION TAG
SEQADV 3OPD PHE B -2 UNP P12861 EXPRESSION TAG
SEQADV 3OPD GLN B -1 UNP P12861 EXPRESSION TAG
SEQADV 3OPD GLY B 0 UNP P12861 EXPRESSION TAG
SEQADV 3OPD MET C -17 UNP P12861 EXPRESSION TAG
SEQADV 3OPD HIS C -16 UNP P12861 EXPRESSION TAG
SEQADV 3OPD HIS C -15 UNP P12861 EXPRESSION TAG
SEQADV 3OPD HIS C -14 UNP P12861 EXPRESSION TAG
SEQADV 3OPD HIS C -13 UNP P12861 EXPRESSION TAG
SEQADV 3OPD HIS C -12 UNP P12861 EXPRESSION TAG
SEQADV 3OPD HIS C -11 UNP P12861 EXPRESSION TAG
SEQADV 3OPD SER C -10 UNP P12861 EXPRESSION TAG
SEQADV 3OPD SER C -9 UNP P12861 EXPRESSION TAG
SEQADV 3OPD GLY C -8 UNP P12861 EXPRESSION TAG
SEQADV 3OPD ARG C -7 UNP P12861 EXPRESSION TAG
SEQADV 3OPD GLU C -6 UNP P12861 EXPRESSION TAG
SEQADV 3OPD ASN C -5 UNP P12861 EXPRESSION TAG
SEQADV 3OPD LEU C -4 UNP P12861 EXPRESSION TAG
SEQADV 3OPD TYR C -3 UNP P12861 EXPRESSION TAG
SEQADV 3OPD PHE C -2 UNP P12861 EXPRESSION TAG
SEQADV 3OPD GLN C -1 UNP P12861 EXPRESSION TAG
SEQADV 3OPD GLY C 0 UNP P12861 EXPRESSION TAG
SEQRES 1 A 231 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN
SEQRES 2 A 231 LEU TYR PHE GLN GLY MET THR GLU THR PHE ALA PHE GLN
SEQRES 3 A 231 ALA GLU ILE ASN GLN LEU MET SER LEU ILE ILE ASN THR
SEQRES 4 A 231 PHE TYR SER ASN LYS GLU ILE PHE LEU ARG GLU LEU ILE
SEQRES 5 A 231 SER ASN SER SER ASP ALA CYS ASP LYS ILE ARG TYR GLN
SEQRES 6 A 231 SER LEU THR ASN GLN SER VAL LEU GLY ASP GLU PRO HIS
SEQRES 7 A 231 LEU ARG ILE ARG VAL ILE PRO ASP ARG VAL ASN LYS THR
SEQRES 8 A 231 LEU THR VAL GLU ASP SER GLY ILE GLY MET THR LYS ALA
SEQRES 9 A 231 ASP LEU VAL ASN ASN LEU GLY THR ILE ALA ARG SER GLY
SEQRES 10 A 231 THR LYS SER PHE MET GLU ALA LEU GLU ALA GLY GLY ASP
SEQRES 11 A 231 MET SER MET ILE GLY GLN PHE GLY VAL GLY PHE TYR SER
SEQRES 12 A 231 ALA TYR LEU VAL ALA ASP ARG VAL THR VAL VAL SER LYS
SEQRES 13 A 231 ASN ASN GLU ASP ASP ALA TYR THR TRP GLU SER SER ALA
SEQRES 14 A 231 GLY GLY THR PHE THR VAL THR SER THR PRO ASP CYS ASP
SEQRES 15 A 231 LEU LYS ARG GLY THR ARG ILE VAL LEU HIS LEU LYS GLU
SEQRES 16 A 231 ASP GLN GLN GLU TYR LEU GLU GLU ARG ARG LEU LYS ASP
SEQRES 17 A 231 LEU ILE LYS LYS HIS SER GLU PHE ILE GLY TYR ASP ILE
SEQRES 18 A 231 GLU LEU MET VAL GLU ASN THR THR GLU LYS
SEQRES 1 B 231 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN
SEQRES 2 B 231 LEU TYR PHE GLN GLY MET THR GLU THR PHE ALA PHE GLN
SEQRES 3 B 231 ALA GLU ILE ASN GLN LEU MET SER LEU ILE ILE ASN THR
SEQRES 4 B 231 PHE TYR SER ASN LYS GLU ILE PHE LEU ARG GLU LEU ILE
SEQRES 5 B 231 SER ASN SER SER ASP ALA CYS ASP LYS ILE ARG TYR GLN
SEQRES 6 B 231 SER LEU THR ASN GLN SER VAL LEU GLY ASP GLU PRO HIS
SEQRES 7 B 231 LEU ARG ILE ARG VAL ILE PRO ASP ARG VAL ASN LYS THR
SEQRES 8 B 231 LEU THR VAL GLU ASP SER GLY ILE GLY MET THR LYS ALA
SEQRES 9 B 231 ASP LEU VAL ASN ASN LEU GLY THR ILE ALA ARG SER GLY
SEQRES 10 B 231 THR LYS SER PHE MET GLU ALA LEU GLU ALA GLY GLY ASP
SEQRES 11 B 231 MET SER MET ILE GLY GLN PHE GLY VAL GLY PHE TYR SER
SEQRES 12 B 231 ALA TYR LEU VAL ALA ASP ARG VAL THR VAL VAL SER LYS
SEQRES 13 B 231 ASN ASN GLU ASP ASP ALA TYR THR TRP GLU SER SER ALA
SEQRES 14 B 231 GLY GLY THR PHE THR VAL THR SER THR PRO ASP CYS ASP
SEQRES 15 B 231 LEU LYS ARG GLY THR ARG ILE VAL LEU HIS LEU LYS GLU
SEQRES 16 B 231 ASP GLN GLN GLU TYR LEU GLU GLU ARG ARG LEU LYS ASP
SEQRES 17 B 231 LEU ILE LYS LYS HIS SER GLU PHE ILE GLY TYR ASP ILE
SEQRES 18 B 231 GLU LEU MET VAL GLU ASN THR THR GLU LYS
SEQRES 1 C 231 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN
SEQRES 2 C 231 LEU TYR PHE GLN GLY MET THR GLU THR PHE ALA PHE GLN
SEQRES 3 C 231 ALA GLU ILE ASN GLN LEU MET SER LEU ILE ILE ASN THR
SEQRES 4 C 231 PHE TYR SER ASN LYS GLU ILE PHE LEU ARG GLU LEU ILE
SEQRES 5 C 231 SER ASN SER SER ASP ALA CYS ASP LYS ILE ARG TYR GLN
SEQRES 6 C 231 SER LEU THR ASN GLN SER VAL LEU GLY ASP GLU PRO HIS
SEQRES 7 C 231 LEU ARG ILE ARG VAL ILE PRO ASP ARG VAL ASN LYS THR
SEQRES 8 C 231 LEU THR VAL GLU ASP SER GLY ILE GLY MET THR LYS ALA
SEQRES 9 C 231 ASP LEU VAL ASN ASN LEU GLY THR ILE ALA ARG SER GLY
SEQRES 10 C 231 THR LYS SER PHE MET GLU ALA LEU GLU ALA GLY GLY ASP
SEQRES 11 C 231 MET SER MET ILE GLY GLN PHE GLY VAL GLY PHE TYR SER
SEQRES 12 C 231 ALA TYR LEU VAL ALA ASP ARG VAL THR VAL VAL SER LYS
SEQRES 13 C 231 ASN ASN GLU ASP ASP ALA TYR THR TRP GLU SER SER ALA
SEQRES 14 C 231 GLY GLY THR PHE THR VAL THR SER THR PRO ASP CYS ASP
SEQRES 15 C 231 LEU LYS ARG GLY THR ARG ILE VAL LEU HIS LEU LYS GLU
SEQRES 16 C 231 ASP GLN GLN GLU TYR LEU GLU GLU ARG ARG LEU LYS ASP
SEQRES 17 C 231 LEU ILE LYS LYS HIS SER GLU PHE ILE GLY TYR ASP ILE
SEQRES 18 C 231 GLU LEU MET VAL GLU ASN THR THR GLU LYS
HET HIE A 214 33
HET HIE B 214 33
HET HIE C 214 33
HETNAM HIE 4-[6,6-DIMETHYL-4-OXO-3-(TRIFLUOROMETHYL)-4,5,6,7-
HETNAM 2 HIE TETRAHYDRO-1H-INDAZOL-1-YL]-2-[(CIS-4-
HETNAM 3 HIE HYDROXYCYCLOHEXYL)AMINO]BENZAMIDE
FORMUL 4 HIE 3(C23 H27 F3 N4 O3)
FORMUL 7 HOH *359(H2 O)
HELIX 1 1 GLN A 8 THR A 21 1 14
HELIX 2 2 ASN A 25 GLU A 27 5 3
HELIX 3 3 ILE A 28 ASN A 51 1 24
HELIX 4 4 GLN A 52 LEU A 55 5 4
HELIX 5 5 THR A 84 ASN A 91 1 8
HELIX 6 6 GLY A 93 ALA A 109 1 17
HELIX 7 7 ASP A 112 GLY A 120 5 9
HELIX 8 8 VAL A 121 LEU A 128 5 8
HELIX 9 9 GLU A 177 LEU A 183 5 7
HELIX 10 10 GLU A 184 GLU A 197 1 14
HELIX 11 11 GLN B 8 THR B 21 1 14
HELIX 12 12 ASN B 25 GLU B 27 5 3
HELIX 13 13 ILE B 28 ASN B 51 1 24
HELIX 14 14 GLN B 52 GLY B 56 5 5
HELIX 15 15 THR B 84 ASN B 91 1 8
HELIX 16 16 GLY B 93 ALA B 109 1 17
HELIX 17 17 ASP B 112 GLY B 120 5 9
HELIX 18 18 VAL B 121 LEU B 128 5 8
HELIX 19 19 GLU B 177 LEU B 183 5 7
HELIX 20 20 GLU B 184 SER B 196 1 13
HELIX 21 21 GLN C 8 THR C 21 1 14
HELIX 22 22 ASN C 25 GLU C 27 5 3
HELIX 23 23 ILE C 28 ASN C 51 1 24
HELIX 24 24 THR C 84 ASN C 91 1 8
HELIX 25 25 LEU C 92 ALA C 109 1 18
HELIX 26 26 ASP C 112 GLY C 120 5 9
HELIX 27 27 VAL C 121 LEU C 128 5 8
HELIX 28 28 GLU C 177 LEU C 183 5 7
HELIX 29 29 GLU C 184 HIS C 195 1 12
SHEET 1 A 8 PHE A 5 ALA A 6 0
SHEET 2 A 8 THR A 154 SER A 159 -1 O PHE A 155 N PHE A 5
SHEET 3 A 8 TYR A 145 SER A 149 -1 N THR A 146 O THR A 158
SHEET 4 A 8 ALA A 130 LYS A 138 -1 N VAL A 135 O TRP A 147
SHEET 5 A 8 GLY A 168 LEU A 175 -1 O ARG A 170 N VAL A 136
SHEET 6 A 8 THR A 73 ASP A 78 -1 N VAL A 76 O ILE A 171
SHEET 7 A 8 ILE A 63 ASP A 68 -1 N ILE A 66 O THR A 75
SHEET 8 A 8 ILE A 203 LEU A 205 1 O GLU A 204 N VAL A 65
SHEET 1 B 8 THR B 2 ALA B 6 0
SHEET 2 B 8 THR B 154 SER B 159 -1 O PHE B 155 N PHE B 5
SHEET 3 B 8 TYR B 145 SER B 149 -1 N THR B 146 O THR B 158
SHEET 4 B 8 ALA B 130 LYS B 138 -1 N VAL B 135 O TRP B 147
SHEET 5 B 8 GLY B 168 LEU B 175 -1 O GLY B 168 N LYS B 138
SHEET 6 B 8 THR B 73 ASP B 78 -1 N ASP B 78 O THR B 169
SHEET 7 B 8 ILE B 63 ASP B 68 -1 N ARG B 64 O GLU B 77
SHEET 8 B 8 ILE B 203 LEU B 205 1 O GLU B 204 N VAL B 65
SHEET 1 C 8 THR C 2 ALA C 6 0
SHEET 2 C 8 THR C 154 SER C 159 -1 O PHE C 155 N PHE C 5
SHEET 3 C 8 TYR C 145 SER C 149 -1 N THR C 146 O THR C 158
SHEET 4 C 8 ALA C 130 LYS C 138 -1 N VAL C 135 O TRP C 147
SHEET 5 C 8 GLY C 168 LEU C 175 -1 O ARG C 170 N VAL C 136
SHEET 6 C 8 THR C 73 ASP C 78 -1 N LEU C 74 O LEU C 173
SHEET 7 C 8 ILE C 63 ASP C 68 -1 N ARG C 64 O GLU C 77
SHEET 8 C 8 ILE C 203 LEU C 205 1 O GLU C 204 N VAL C 65
CISPEP 1 PRO A 161 ASP A 162 0 1.41
CISPEP 2 SER C 53 VAL C 54 0 1.06
SITE 1 AC1 18 ASN A 36 ALA A 40 LYS A 43 ASP A 78
SITE 2 AC1 18 MET A 83 ASN A 91 LEU A 92 ILE A 95
SITE 3 AC1 18 ALA A 96 GLY A 120 TYR A 124 TRP A 147
SITE 4 AC1 18 THR A 169 ILE A 171 HOH A 239 HOH A 248
SITE 5 AC1 18 HOH A 355 HOH A 356
SITE 1 AC2 15 ASN B 36 ALA B 40 ASP B 78 MET B 83
SITE 2 AC2 15 ASN B 91 LEU B 92 ALA B 96 GLY B 120
SITE 3 AC2 15 PHE B 123 TYR B 124 TRP B 147 THR B 169
SITE 4 AC2 15 ILE B 171 HOH B 221 HOH B 283
SITE 1 AC3 13 ASN C 36 ALA C 40 ASP C 78 MET C 83
SITE 2 AC3 13 ASN C 91 LEU C 92 ALA C 96 GLY C 120
SITE 3 AC3 13 VAL C 121 PHE C 123 TYR C 124 TRP C 147
SITE 4 AC3 13 ILE C 171
CRYST1 70.915 72.103 152.147 90.00 90.00 90.00 P 21 21 21 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014101 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013869 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006573 0.00000