data_3OQG # _entry.id 3OQG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3OQG NDB NA0727 RCSB RCSB061444 WWPDB D_1000061444 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3OR3 'Restriction endonuclease HPY188I in complex with product DNA' unspecified PDB 3MX1 'The structure of GIY-YIG endonuclease R.Eco29kI' unspecified PDB 3MX4 'DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29KI inactive variant E142Q' unspecified PDB 3NIC 'DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29kI inactive variant Y49F' unspecified PDB 2WSH 'STRUCTURE OF BACTERIOPHAGE T4 ENDOII E118A MUTANT' unspecified PDB 1MK0 'CATALYTIC DOMAIN OF INTRON ENDONUCLEASE I-TEVI, E75A MUTANT' unspecified PDB 1YD1 ;CRYSTAL STRUCTURE OF THE GIY-YIG N-TERMINAL ENDONUCLEASE DOMAIN OF UVRC FROM THERMOTOGA MARITIMA BOUND TO ITS CATALYTIC DIVALENT CATION: MAGNESIUM ; unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3OQG _pdbx_database_status.recvd_initial_deposition_date 2010-09-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sokolowska, M.' 1 'Czapinska, H.' 2 'Bochtler, M.' 3 # _citation.id primary _citation.title 'Hpy188I-DNA pre- and post-cleavage complexes--snapshots of the GIY-YIG nuclease mediated catalysis.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 39 _citation.page_first 1554 _citation.page_last 1564 _citation.year 2011 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20935048 _citation.pdbx_database_id_DOI 10.1093/nar/gkq821 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Sokolowska, M.' 1 primary 'Czapinska, H.' 2 primary 'Bochtler, M.' 3 # _cell.entry_id 3OQG _cell.length_a 65.236 _cell.length_b 65.236 _cell.length_c 220.630 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3OQG _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Hpy188I 21130.070 2 ? ? ? ? 2 polymer syn ;DNA 5'-D(*GP*AP*TP*CP*TP*GP*AP*AP*C)-3' ; 2739.824 1 ? ? ? ? 3 polymer syn ;DNA 5'-D(*GP*TP*TP*CP*AP*GP*AP*TP*C)-3' ; 2730.810 1 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 5 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 6 water nat water 18.015 359 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;MGHHHHHHEFMAKRKSDIILKSVDDLKDEIDYKDFEYKEYFNLLCELVPNNSLEKLEINAIDEKN(MSE)KNEGLVYVFV IQGKIFKIGHSITPITKRVQSYNCGKVEYRKNGTCSTTNYFVLQSLLKINKIVQVYAFFPEQPTYTLFGKTYQDSFSTSK RAENVILENFIKNHNKKPIGCTQT ; ;MGHHHHHHEFMAKRKSDIILKSVDDLKDEIDYKDFEYKEYFNLLCELVPNNSLEKLEINAIDEKNMKNEGLVYVFVIQGK IFKIGHSITPITKRVQSYNCGKVEYRKNGTCSTTNYFVLQSLLKINKIVQVYAFFPEQPTYTLFGKTYQDSFSTSKRAEN VILENFIKNHNKKPIGCTQT ; A,B ? 2 polydeoxyribonucleotide no no '(DG)(DA)(DT)(DC)(DT)(DG)(DA)(DA)(DC)' GATCTGAAC C ? 3 polydeoxyribonucleotide no no '(DG)(DT)(DT)(DC)(DA)(DG)(DA)(DT)(DC)' GTTCAGATC D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 GLU n 1 10 PHE n 1 11 MET n 1 12 ALA n 1 13 LYS n 1 14 ARG n 1 15 LYS n 1 16 SER n 1 17 ASP n 1 18 ILE n 1 19 ILE n 1 20 LEU n 1 21 LYS n 1 22 SER n 1 23 VAL n 1 24 ASP n 1 25 ASP n 1 26 LEU n 1 27 LYS n 1 28 ASP n 1 29 GLU n 1 30 ILE n 1 31 ASP n 1 32 TYR n 1 33 LYS n 1 34 ASP n 1 35 PHE n 1 36 GLU n 1 37 TYR n 1 38 LYS n 1 39 GLU n 1 40 TYR n 1 41 PHE n 1 42 ASN n 1 43 LEU n 1 44 LEU n 1 45 CYS n 1 46 GLU n 1 47 LEU n 1 48 VAL n 1 49 PRO n 1 50 ASN n 1 51 ASN n 1 52 SER n 1 53 LEU n 1 54 GLU n 1 55 LYS n 1 56 LEU n 1 57 GLU n 1 58 ILE n 1 59 ASN n 1 60 ALA n 1 61 ILE n 1 62 ASP n 1 63 GLU n 1 64 LYS n 1 65 ASN n 1 66 MSE n 1 67 LYS n 1 68 ASN n 1 69 GLU n 1 70 GLY n 1 71 LEU n 1 72 VAL n 1 73 TYR n 1 74 VAL n 1 75 PHE n 1 76 VAL n 1 77 ILE n 1 78 GLN n 1 79 GLY n 1 80 LYS n 1 81 ILE n 1 82 PHE n 1 83 LYS n 1 84 ILE n 1 85 GLY n 1 86 HIS n 1 87 SER n 1 88 ILE n 1 89 THR n 1 90 PRO n 1 91 ILE n 1 92 THR n 1 93 LYS n 1 94 ARG n 1 95 VAL n 1 96 GLN n 1 97 SER n 1 98 TYR n 1 99 ASN n 1 100 CYS n 1 101 GLY n 1 102 LYS n 1 103 VAL n 1 104 GLU n 1 105 TYR n 1 106 ARG n 1 107 LYS n 1 108 ASN n 1 109 GLY n 1 110 THR n 1 111 CYS n 1 112 SER n 1 113 THR n 1 114 THR n 1 115 ASN n 1 116 TYR n 1 117 PHE n 1 118 VAL n 1 119 LEU n 1 120 GLN n 1 121 SER n 1 122 LEU n 1 123 LEU n 1 124 LYS n 1 125 ILE n 1 126 ASN n 1 127 LYS n 1 128 ILE n 1 129 VAL n 1 130 GLN n 1 131 VAL n 1 132 TYR n 1 133 ALA n 1 134 PHE n 1 135 PHE n 1 136 PRO n 1 137 GLU n 1 138 GLN n 1 139 PRO n 1 140 THR n 1 141 TYR n 1 142 THR n 1 143 LEU n 1 144 PHE n 1 145 GLY n 1 146 LYS n 1 147 THR n 1 148 TYR n 1 149 GLN n 1 150 ASP n 1 151 SER n 1 152 PHE n 1 153 SER n 1 154 THR n 1 155 SER n 1 156 LYS n 1 157 ARG n 1 158 ALA n 1 159 GLU n 1 160 ASN n 1 161 VAL n 1 162 ILE n 1 163 LEU n 1 164 GLU n 1 165 ASN n 1 166 PHE n 1 167 ILE n 1 168 LYS n 1 169 ASN n 1 170 HIS n 1 171 ASN n 1 172 LYS n 1 173 LYS n 1 174 PRO n 1 175 ILE n 1 176 GLY n 1 177 CYS n 1 178 THR n 1 179 GLN n 1 180 THR n 2 1 DG n 2 2 DA n 2 3 DT n 2 4 DC n 2 5 DT n 2 6 DG n 2 7 DA n 2 8 DA n 2 9 DC n 3 1 DG n 3 2 DT n 3 3 DT n 3 4 DC n 3 5 DA n 3 6 DG n 3 7 DA n 3 8 DT n 3 9 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Campylobacter pylori' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene hpy188IR _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 188 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Helicobacter pylori' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 585532 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ER2566 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET15BMOD _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'SYNTHETIC OLIGONUCLEOTIDE' 3 1 sample ? ? ? ? ? 'SYNTHETIC OLIGONUCLEOTIDE' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q9KJ88_HELPY Q9KJ88 1 ;MAKRKSDIILKSVDDLKDEIDYKDFEYKEYFNLLCELVPNNSLEKLEINAIDEKNMKNEGLVYVFVIQGKIFKIGHSITP ITKRVQSYNCGKVEYRKNGTCSTTNYFVLQSLLKINKIVQVYAFFPEQPTYTLFGKTYQDSFSTSKRAENVILENFIKNH NKKPIGCTQT ; 1 ? 2 PDB 3OQG 3OQG 2 GATCTGAAC ? ? 3 PDB 3OQG 3OQG 3 GTTCAGATC ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3OQG A 11 ? 180 ? Q9KJ88 1 ? 170 ? 1 170 2 1 3OQG B 11 ? 180 ? Q9KJ88 1 ? 170 ? 1 170 3 2 3OQG C 1 ? 9 ? 3OQG -4 ? 4 ? -4 4 4 3 3OQG D 1 ? 9 ? 3OQG -4 ? 4 ? -4 4 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3OQG MET A 1 ? UNP Q9KJ88 ? ? 'EXPRESSION TAG' -9 1 1 3OQG GLY A 2 ? UNP Q9KJ88 ? ? 'EXPRESSION TAG' -8 2 1 3OQG HIS A 3 ? UNP Q9KJ88 ? ? 'EXPRESSION TAG' -7 3 1 3OQG HIS A 4 ? UNP Q9KJ88 ? ? 'EXPRESSION TAG' -6 4 1 3OQG HIS A 5 ? UNP Q9KJ88 ? ? 'EXPRESSION TAG' -5 5 1 3OQG HIS A 6 ? UNP Q9KJ88 ? ? 'EXPRESSION TAG' -4 6 1 3OQG HIS A 7 ? UNP Q9KJ88 ? ? 'EXPRESSION TAG' -3 7 1 3OQG HIS A 8 ? UNP Q9KJ88 ? ? 'EXPRESSION TAG' -2 8 1 3OQG GLU A 9 ? UNP Q9KJ88 ? ? 'EXPRESSION TAG' -1 9 1 3OQG PHE A 10 ? UNP Q9KJ88 ? ? 'EXPRESSION TAG' 0 10 2 3OQG MET B 1 ? UNP Q9KJ88 ? ? 'EXPRESSION TAG' -9 11 2 3OQG GLY B 2 ? UNP Q9KJ88 ? ? 'EXPRESSION TAG' -8 12 2 3OQG HIS B 3 ? UNP Q9KJ88 ? ? 'EXPRESSION TAG' -7 13 2 3OQG HIS B 4 ? UNP Q9KJ88 ? ? 'EXPRESSION TAG' -6 14 2 3OQG HIS B 5 ? UNP Q9KJ88 ? ? 'EXPRESSION TAG' -5 15 2 3OQG HIS B 6 ? UNP Q9KJ88 ? ? 'EXPRESSION TAG' -4 16 2 3OQG HIS B 7 ? UNP Q9KJ88 ? ? 'EXPRESSION TAG' -3 17 2 3OQG HIS B 8 ? UNP Q9KJ88 ? ? 'EXPRESSION TAG' -2 18 2 3OQG GLU B 9 ? UNP Q9KJ88 ? ? 'EXPRESSION TAG' -1 19 2 3OQG PHE B 10 ? UNP Q9KJ88 ? ? 'EXPRESSION TAG' 0 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3OQG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.46 _exptl_crystal.density_percent_sol 50.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_details '0.1 M MES/NaOH pH 6.2 and 30% MPD, VAPOR DIFFUSION, SITTING DROP, temperature 292K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2010-05-10 _diffrn_detector.details 'BENT MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'TRIANGULAR MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.05 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'MPG/DESY, HAMBURG BEAMLINE BW6' _diffrn_source.pdbx_synchrotron_site 'MPG/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline BW6 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.05 # _reflns.entry_id 3OQG _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 1.750 _reflns.number_obs 48330 _reflns.number_all 48330 _reflns.percent_possible_obs 98.0 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_Rsym_value 0.061 _reflns.pdbx_netI_over_sigmaI 24.651 _reflns.B_iso_Wilson_estimate 23.2 _reflns.pdbx_redundancy 5.55 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.77 _reflns_shell.percent_possible_all 97.1 _reflns_shell.Rmerge_I_obs 0.44 _reflns_shell.pdbx_Rsym_value 0.44 _reflns_shell.meanI_over_sigI_obs 3.265 _reflns_shell.pdbx_redundancy 5.55 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1895 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3OQG _refine.ls_number_reflns_obs 48287 _refine.ls_number_reflns_all 48287 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.90 _refine.ls_d_res_high 1.75 _refine.ls_percent_reflns_obs 98.0 _refine.ls_R_factor_obs 0.16612 _refine.ls_R_factor_all 0.16612 _refine.ls_R_factor_R_work 0.16474 _refine.ls_R_factor_R_free 0.19218 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 2393 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.957 _refine.B_iso_mean 20.972 _refine.aniso_B[1][1] 0.70 _refine.aniso_B[2][2] 0.70 _refine.aniso_B[3][3] -1.40 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;THE DENSITY FOR THE NUCLEOPHILIC WATER MOLECULES (RESIDUES A173 & B172) IS VERY WEAK. IT MIGHT CORRESPOND TO A (HALF OCCUPIED) WATER MOLECULE OR A HYDROXIDE ION. ACCORDING TO THE MS DATA, THE SELENOMETHIONINE SUBSTITUTION WAS SUCCESSFUL ONLY IN PART. THEREFORE, ONLY MET56 WAS MODELED AS SELENOMETHIONINE. HOWEVER, ALL THREE MET POSITIONS ARE LIKELY TO BE PARTIALLY OCCUPIED BY MET AND PARTIALLY BY MSE.THE CNS PROGRAM HAS BEEN USED FOR DNA REFINEMENT. NO SUGAR PUCKER CONSTRAINTS HAVE BEEN APPLIED. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. TLS REFINEMENT HAS BEEN USED. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'RESOLUTION SHELLS' _refine.pdbx_overall_ESU_R_Free 0.106 _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2894 _refine_hist.pdbx_number_atoms_nucleic_acid 363 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 359 _refine_hist.number_atoms_total 3619 _refine_hist.d_res_high 1.75 _refine_hist.d_res_low 19.90 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 4222 'X-RAY DIFFRACTION' ? r_bond_other_d 0.000 0.020 ? 2657 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.224 2.172 ? 5906 'X-RAY DIFFRACTION' ? r_angle_other_deg 3.961 3.000 ? 6612 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.580 5.000 ? 445 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.222 26.057 ? 175 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.094 15.000 ? 667 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.779 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.077 0.200 ? 636 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 4353 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.008 0.020 ? 745 'X-RAY DIFFRACTION' ? r_nbd_refined 0.208 0.200 ? 793 'X-RAY DIFFRACTION' ? r_nbd_other 0.230 0.200 ? 2450 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.191 0.200 ? 1960 'X-RAY DIFFRACTION' ? r_nbtor_other 0.112 0.200 ? 1536 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.151 0.200 ? 353 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.156 0.200 ? 1 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.075 0.200 ? 8 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.208 0.200 ? 39 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.230 0.200 ? 46 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.182 0.200 ? 29 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.600 1.500 ? 2036 'X-RAY DIFFRACTION' ? r_mcbond_other 0.000 1.500 ? 801 'X-RAY DIFFRACTION' ? r_mcangle_it 1.107 2.000 ? 3387 'X-RAY DIFFRACTION' ? r_scbond_it 1.492 3.000 ? 2186 'X-RAY DIFFRACTION' ? r_scangle_it 2.251 4.500 ? 2514 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.750 _refine_ls_shell.d_res_low 1.795 _refine_ls_shell.number_reflns_R_work 3222 _refine_ls_shell.R_factor_R_work 0.228 _refine_ls_shell.percent_reflns_obs 97.0 _refine_ls_shell.R_factor_R_free 0.262 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 216 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 3438 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3OQG _struct.title 'Restriction endonuclease HPY188I in complex with substrate DNA' _struct.pdbx_descriptor 'Hpy188I endonuclease/DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3OQG _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text ;ENDONUCLEASE-DNA COMPLEX, RESTRICTION ENZYME, HPY188I, INTERCALATION, GIY-YIG NUCLEASE, CATALYTIC MECHANISM, PSEUDOPALINDROME, HYDROLASE-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 4 ? H N N 6 ? I N N 6 ? J N N 6 ? K N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 14 ? ILE A 18 ? ARG A 4 ILE A 8 5 ? 5 HELX_P HELX_P2 2 SER A 22 ? LYS A 27 ? SER A 12 LYS A 17 5 ? 6 HELX_P HELX_P3 3 ASP A 31 ? PHE A 35 ? ASP A 21 PHE A 25 5 ? 5 HELX_P HELX_P4 4 TYR A 37 ? PHE A 41 ? TYR A 27 PHE A 31 5 ? 5 HELX_P HELX_P5 5 ASP A 62 ? MSE A 66 ? ASP A 52 MSE A 56 5 ? 5 HELX_P HELX_P6 6 PRO A 90 ? ASN A 99 ? PRO A 80 ASN A 89 1 ? 10 HELX_P HELX_P7 7 LYS A 102 ? GLY A 109 ? LYS A 92 GLY A 99 1 ? 8 HELX_P HELX_P8 8 SER A 112 ? ASN A 126 ? SER A 102 ASN A 116 1 ? 15 HELX_P HELX_P9 9 SER A 153 ? ASN A 171 ? SER A 143 ASN A 161 1 ? 19 HELX_P HELX_P10 10 ARG B 14 ? ILE B 18 ? ARG B 4 ILE B 8 5 ? 5 HELX_P HELX_P11 11 SER B 22 ? LYS B 27 ? SER B 12 LYS B 17 5 ? 6 HELX_P HELX_P12 12 ASP B 31 ? PHE B 35 ? ASP B 21 PHE B 25 5 ? 5 HELX_P HELX_P13 13 TYR B 37 ? PHE B 41 ? TYR B 27 PHE B 31 5 ? 5 HELX_P HELX_P14 14 ASP B 62 ? MSE B 66 ? ASP B 52 MSE B 56 5 ? 5 HELX_P HELX_P15 15 PRO B 90 ? ASN B 99 ? PRO B 80 ASN B 89 1 ? 10 HELX_P HELX_P16 16 LYS B 102 ? GLY B 109 ? LYS B 92 GLY B 99 1 ? 8 HELX_P HELX_P17 17 SER B 112 ? ASN B 126 ? SER B 102 ASN B 116 1 ? 15 HELX_P HELX_P18 18 SER B 153 ? ASN B 171 ? SER B 143 ASN B 161 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ASN 65 C ? ? ? 1_555 A MSE 66 N ? ? A ASN 55 A MSE 56 1_555 ? ? ? ? ? ? ? 1.323 ? covale2 covale ? ? A MSE 66 C ? ? ? 1_555 A LYS 67 N ? ? A MSE 56 A LYS 57 1_555 ? ? ? ? ? ? ? 1.332 ? covale3 covale ? ? B ASN 65 C ? ? ? 1_555 B MSE 66 N ? ? B ASN 55 B MSE 56 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale ? ? B MSE 66 C ? ? ? 1_555 B LYS 67 N ? ? B MSE 56 B LYS 57 1_555 ? ? ? ? ? ? ? 1.335 ? hydrog1 hydrog ? ? C DG 1 N1 A ? ? 1_555 D DC 9 N3 A ? C DG -4 D DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? C DG 1 N2 A ? ? 1_555 D DC 9 O2 A ? C DG -4 D DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? C DG 1 O6 A ? ? 1_555 D DC 9 N4 A ? C DG -4 D DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? C DA 2 N1 A ? ? 1_555 D DT 8 N3 A ? C DA -3 D DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? C DA 2 N6 A ? ? 1_555 D DT 8 O4 A ? C DA -3 D DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? C DT 3 N3 A ? ? 1_555 D DA 7 N1 A ? C DT -2 D DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? C DT 3 O4 A ? ? 1_555 D DA 7 N6 A ? C DT -2 D DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? C DC 4 N3 A ? ? 1_555 D DG 6 N1 A ? C DC -1 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? C DC 4 N4 A ? ? 1_555 D DG 6 O6 A ? C DC -1 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? C DC 4 O2 A ? ? 1_555 D DG 6 N2 A ? C DC -1 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? C DT 5 N3 A ? ? 1_555 D DA 5 N1 A ? C DT 0 D DA 0 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? C DT 5 O4 A ? ? 1_555 D DA 5 N6 A ? C DT 0 D DA 0 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? C DG 6 N1 A ? ? 1_555 D DC 4 N3 A ? C DG 1 D DC -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? C DG 6 N2 A ? ? 1_555 D DC 4 O2 A ? C DG 1 D DC -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? C DG 6 O6 A ? ? 1_555 D DC 4 N4 A ? C DG 1 D DC -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? C DA 7 N1 A ? ? 1_555 D DT 3 N3 A ? C DA 2 D DT -2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? C DA 7 N6 A ? ? 1_555 D DT 3 O4 A ? C DA 2 D DT -2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? C DA 8 N1 A ? ? 1_555 D DT 2 N3 A ? C DA 3 D DT -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? C DA 8 N6 A ? ? 1_555 D DT 2 O4 A ? C DA 3 D DT -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? C DC 9 N3 A ? ? 1_555 D DG 1 N1 A ? C DC 4 D DG -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? C DC 9 N4 A ? ? 1_555 D DG 1 O6 A ? C DC 4 D DG -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? C DC 9 O2 A ? ? 1_555 D DG 1 N2 A ? C DC 4 D DG -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 5 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 55 ? ALA A 60 ? LYS A 45 ALA A 50 A 2 ASN A 42 ? ASN A 50 ? ASN A 32 ASN A 40 A 3 VAL A 129 ? PHE A 134 ? VAL A 119 PHE A 124 A 4 LEU A 71 ? ILE A 77 ? LEU A 61 ILE A 67 A 5 LYS A 80 ? SER A 87 ? LYS A 70 SER A 77 B 1 THR A 140 ? LEU A 143 ? THR A 130 LEU A 133 B 2 LYS A 146 ? GLN A 149 ? LYS A 136 GLN A 139 C 1 LYS B 55 ? ALA B 60 ? LYS B 45 ALA B 50 C 2 ASN B 42 ? ASN B 50 ? ASN B 32 ASN B 40 C 3 VAL B 129 ? PHE B 134 ? VAL B 119 PHE B 124 C 4 LEU B 71 ? ILE B 77 ? LEU B 61 ILE B 67 C 5 LYS B 80 ? SER B 87 ? LYS B 70 SER B 77 D 1 THR B 140 ? LEU B 143 ? THR B 130 LEU B 133 D 2 LYS B 146 ? GLN B 149 ? LYS B 136 GLN B 139 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASN A 59 ? O ASN A 49 N GLU A 46 ? N GLU A 36 A 2 3 N LEU A 44 ? N LEU A 34 O VAL A 131 ? O VAL A 121 A 3 4 O GLN A 130 ? O GLN A 120 N VAL A 76 ? N VAL A 66 A 4 5 N PHE A 75 ? N PHE A 65 O PHE A 82 ? O PHE A 72 B 1 2 N TYR A 141 ? N TYR A 131 O TYR A 148 ? O TYR A 138 C 1 2 O ASN B 59 ? O ASN B 49 N GLU B 46 ? N GLU B 36 C 2 3 N CYS B 45 ? N CYS B 35 O VAL B 131 ? O VAL B 121 C 3 4 O GLN B 130 ? O GLN B 120 N VAL B 76 ? N VAL B 66 C 4 5 N PHE B 75 ? N PHE B 65 O PHE B 82 ? O PHE B 72 D 1 2 N TYR B 141 ? N TYR B 131 O TYR B 148 ? O TYR B 138 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Author ? ? ? ? 6 'BINDING SITE FOR RESIDUE NA A 171, CONFORMER A' AC2 Author ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL A 172' AC3 Author ? ? ? ? 6 'BINDING SITE FOR RESIDUE NA B 171, CONFORMER A' BC1 Author ? ? ? ? 6 'BINDING SITE FOR RESIDUE NA A 171, CONFORMER B' BC3 Author ? ? ? ? 6 'BINDING SITE FOR RESIDUE NA B 171, CONFORMER B' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLU A 159 ? GLU A 149 . ? 1_555 ? 2 AC1 6 HOH H . ? HOH A 238 . ? 1_555 ? 3 AC1 6 HOH H . ? HOH A 276 . ? 1_555 ? 4 AC1 6 HOH I . ? HOH B 203 . ? 1_555 ? 5 AC1 6 DA D 5 ? DA D 0 . ? 1_555 ? 6 AC1 6 DG D 6 ? DG D 1 . ? 1_555 ? 7 AC2 4 ASN A 169 ? ASN A 159 . ? 1_555 ? 8 AC2 4 HIS A 170 ? HIS A 160 . ? 1_555 ? 9 AC2 4 HOH H . ? HOH A 307 . ? 1_555 ? 10 AC2 4 GLU B 36 ? GLU B 26 . ? 1_555 ? 11 AC3 6 GLU B 159 ? GLU B 149 . ? 1_555 ? 12 AC3 6 HOH H . ? HOH A 218 . ? 1_555 ? 13 AC3 6 HOH I . ? HOH B 216 . ? 1_555 ? 14 AC3 6 HOH I . ? HOH B 232 . ? 1_555 ? 15 AC3 6 DT C 5 ? DT C 0 . ? 1_555 ? 16 AC3 6 DG C 6 ? DG C 1 . ? 1_555 ? 17 BC1 6 GLU A 159 ? GLU A 149 . ? 1_555 ? 18 BC1 6 HOH H . ? HOH A 238 . ? 1_555 ? 19 BC1 6 HOH H . ? HOH A 276 . ? 1_555 ? 20 BC1 6 HOH I . ? HOH B 203 . ? 1_555 ? 21 BC1 6 DT C 5 ? DT C 0 . ? 1_555 ? 22 BC1 6 DG C 6 ? DG C 1 . ? 1_555 ? 23 BC3 6 GLU B 159 ? GLU B 149 . ? 1_555 ? 24 BC3 6 HOH H . ? HOH A 218 . ? 1_555 ? 25 BC3 6 HOH I . ? HOH B 216 . ? 1_555 ? 26 BC3 6 HOH I . ? HOH B 232 . ? 1_555 ? 27 BC3 6 DA D 5 ? DA D 0 . ? 1_555 ? 28 BC3 6 DG D 6 ? DG D 1 . ? 1_555 ? # _database_PDB_matrix.entry_id 3OQG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3OQG _atom_sites.fract_transf_matrix[1][1] 0.015329 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015329 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004532 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N NA O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -9 ? ? ? A . n A 1 2 GLY 2 -8 ? ? ? A . n A 1 3 HIS 3 -7 ? ? ? A . n A 1 4 HIS 4 -6 ? ? ? A . n A 1 5 HIS 5 -5 -5 HIS HIS A . n A 1 6 HIS 6 -4 -4 HIS HIS A . n A 1 7 HIS 7 -3 -3 HIS HIS A . n A 1 8 HIS 8 -2 -2 HIS HIS A . n A 1 9 GLU 9 -1 -1 GLU GLU A . n A 1 10 PHE 10 0 0 PHE PHE A . n A 1 11 MET 11 1 1 MET MET A . n A 1 12 ALA 12 2 2 ALA ALA A . n A 1 13 LYS 13 3 3 LYS LYS A . n A 1 14 ARG 14 4 4 ARG ARG A . n A 1 15 LYS 15 5 5 LYS LYS A . n A 1 16 SER 16 6 6 SER SER A . n A 1 17 ASP 17 7 7 ASP ASP A . n A 1 18 ILE 18 8 8 ILE ILE A . n A 1 19 ILE 19 9 9 ILE ILE A . n A 1 20 LEU 20 10 10 LEU LEU A . n A 1 21 LYS 21 11 11 LYS LYS A . n A 1 22 SER 22 12 12 SER SER A . n A 1 23 VAL 23 13 13 VAL VAL A . n A 1 24 ASP 24 14 14 ASP ASP A . n A 1 25 ASP 25 15 15 ASP ASP A . n A 1 26 LEU 26 16 16 LEU LEU A . n A 1 27 LYS 27 17 17 LYS LYS A . n A 1 28 ASP 28 18 18 ASP ASP A . n A 1 29 GLU 29 19 19 GLU GLU A . n A 1 30 ILE 30 20 20 ILE ILE A . n A 1 31 ASP 31 21 21 ASP ASP A . n A 1 32 TYR 32 22 22 TYR TYR A . n A 1 33 LYS 33 23 23 LYS LYS A . n A 1 34 ASP 34 24 24 ASP ASP A . n A 1 35 PHE 35 25 25 PHE PHE A . n A 1 36 GLU 36 26 26 GLU GLU A . n A 1 37 TYR 37 27 27 TYR TYR A . n A 1 38 LYS 38 28 28 LYS LYS A . n A 1 39 GLU 39 29 29 GLU GLU A . n A 1 40 TYR 40 30 30 TYR TYR A . n A 1 41 PHE 41 31 31 PHE PHE A . n A 1 42 ASN 42 32 32 ASN ASN A . n A 1 43 LEU 43 33 33 LEU LEU A . n A 1 44 LEU 44 34 34 LEU LEU A . n A 1 45 CYS 45 35 35 CYS CYS A . n A 1 46 GLU 46 36 36 GLU GLU A . n A 1 47 LEU 47 37 37 LEU LEU A . n A 1 48 VAL 48 38 38 VAL VAL A . n A 1 49 PRO 49 39 39 PRO PRO A . n A 1 50 ASN 50 40 40 ASN ASN A . n A 1 51 ASN 51 41 41 ASN ASN A . n A 1 52 SER 52 42 42 SER SER A . n A 1 53 LEU 53 43 43 LEU LEU A . n A 1 54 GLU 54 44 44 GLU GLU A . n A 1 55 LYS 55 45 45 LYS LYS A . n A 1 56 LEU 56 46 46 LEU LEU A . n A 1 57 GLU 57 47 47 GLU GLU A . n A 1 58 ILE 58 48 48 ILE ILE A . n A 1 59 ASN 59 49 49 ASN ASN A . n A 1 60 ALA 60 50 50 ALA ALA A . n A 1 61 ILE 61 51 51 ILE ILE A . n A 1 62 ASP 62 52 52 ASP ASP A . n A 1 63 GLU 63 53 53 GLU GLU A . n A 1 64 LYS 64 54 54 LYS LYS A . n A 1 65 ASN 65 55 55 ASN ASN A . n A 1 66 MSE 66 56 56 MSE MSE A . n A 1 67 LYS 67 57 57 LYS LYS A . n A 1 68 ASN 68 58 58 ASN ASN A . n A 1 69 GLU 69 59 59 GLU GLU A . n A 1 70 GLY 70 60 60 GLY GLY A . n A 1 71 LEU 71 61 61 LEU LEU A . n A 1 72 VAL 72 62 62 VAL VAL A . n A 1 73 TYR 73 63 63 TYR TYR A . n A 1 74 VAL 74 64 64 VAL VAL A . n A 1 75 PHE 75 65 65 PHE PHE A . n A 1 76 VAL 76 66 66 VAL VAL A . n A 1 77 ILE 77 67 67 ILE ILE A . n A 1 78 GLN 78 68 68 GLN GLN A . n A 1 79 GLY 79 69 69 GLY GLY A . n A 1 80 LYS 80 70 70 LYS LYS A . n A 1 81 ILE 81 71 71 ILE ILE A . n A 1 82 PHE 82 72 72 PHE PHE A . n A 1 83 LYS 83 73 73 LYS LYS A . n A 1 84 ILE 84 74 74 ILE ILE A . n A 1 85 GLY 85 75 75 GLY GLY A . n A 1 86 HIS 86 76 76 HIS HIS A . n A 1 87 SER 87 77 77 SER SER A . n A 1 88 ILE 88 78 78 ILE ILE A . n A 1 89 THR 89 79 79 THR THR A . n A 1 90 PRO 90 80 80 PRO PRO A . n A 1 91 ILE 91 81 81 ILE ILE A . n A 1 92 THR 92 82 82 THR THR A . n A 1 93 LYS 93 83 83 LYS LYS A . n A 1 94 ARG 94 84 84 ARG ARG A . n A 1 95 VAL 95 85 85 VAL VAL A . n A 1 96 GLN 96 86 86 GLN GLN A . n A 1 97 SER 97 87 87 SER SER A . n A 1 98 TYR 98 88 88 TYR TYR A . n A 1 99 ASN 99 89 89 ASN ASN A . n A 1 100 CYS 100 90 90 CYS CYS A . n A 1 101 GLY 101 91 91 GLY GLY A . n A 1 102 LYS 102 92 92 LYS LYS A . n A 1 103 VAL 103 93 93 VAL VAL A . n A 1 104 GLU 104 94 94 GLU GLU A . n A 1 105 TYR 105 95 95 TYR TYR A . n A 1 106 ARG 106 96 96 ARG ARG A . n A 1 107 LYS 107 97 97 LYS LYS A . n A 1 108 ASN 108 98 98 ASN ASN A . n A 1 109 GLY 109 99 99 GLY GLY A . n A 1 110 THR 110 100 100 THR THR A . n A 1 111 CYS 111 101 101 CYS CYS A . n A 1 112 SER 112 102 102 SER SER A . n A 1 113 THR 113 103 103 THR THR A . n A 1 114 THR 114 104 104 THR THR A . n A 1 115 ASN 115 105 105 ASN ASN A . n A 1 116 TYR 116 106 106 TYR TYR A . n A 1 117 PHE 117 107 107 PHE PHE A . n A 1 118 VAL 118 108 108 VAL VAL A . n A 1 119 LEU 119 109 109 LEU LEU A . n A 1 120 GLN 120 110 110 GLN GLN A . n A 1 121 SER 121 111 111 SER SER A . n A 1 122 LEU 122 112 112 LEU LEU A . n A 1 123 LEU 123 113 113 LEU LEU A . n A 1 124 LYS 124 114 114 LYS LYS A . n A 1 125 ILE 125 115 115 ILE ILE A . n A 1 126 ASN 126 116 116 ASN ASN A . n A 1 127 LYS 127 117 117 LYS LYS A . n A 1 128 ILE 128 118 118 ILE ILE A . n A 1 129 VAL 129 119 119 VAL VAL A . n A 1 130 GLN 130 120 120 GLN GLN A . n A 1 131 VAL 131 121 121 VAL VAL A . n A 1 132 TYR 132 122 122 TYR TYR A . n A 1 133 ALA 133 123 123 ALA ALA A . n A 1 134 PHE 134 124 124 PHE PHE A . n A 1 135 PHE 135 125 125 PHE PHE A . n A 1 136 PRO 136 126 126 PRO PRO A . n A 1 137 GLU 137 127 127 GLU GLU A . n A 1 138 GLN 138 128 128 GLN GLN A . n A 1 139 PRO 139 129 129 PRO PRO A . n A 1 140 THR 140 130 130 THR THR A . n A 1 141 TYR 141 131 131 TYR TYR A . n A 1 142 THR 142 132 132 THR THR A . n A 1 143 LEU 143 133 133 LEU LEU A . n A 1 144 PHE 144 134 134 PHE PHE A . n A 1 145 GLY 145 135 135 GLY GLY A . n A 1 146 LYS 146 136 136 LYS LYS A . n A 1 147 THR 147 137 137 THR THR A . n A 1 148 TYR 148 138 138 TYR TYR A . n A 1 149 GLN 149 139 139 GLN GLN A . n A 1 150 ASP 150 140 140 ASP ASP A . n A 1 151 SER 151 141 141 SER SER A . n A 1 152 PHE 152 142 142 PHE PHE A . n A 1 153 SER 153 143 143 SER SER A . n A 1 154 THR 154 144 144 THR THR A . n A 1 155 SER 155 145 145 SER SER A . n A 1 156 LYS 156 146 146 LYS LYS A . n A 1 157 ARG 157 147 147 ARG ARG A . n A 1 158 ALA 158 148 148 ALA ALA A . n A 1 159 GLU 159 149 149 GLU GLU A . n A 1 160 ASN 160 150 150 ASN ASN A . n A 1 161 VAL 161 151 151 VAL VAL A . n A 1 162 ILE 162 152 152 ILE ILE A . n A 1 163 LEU 163 153 153 LEU LEU A . n A 1 164 GLU 164 154 154 GLU GLU A . n A 1 165 ASN 165 155 155 ASN ASN A . n A 1 166 PHE 166 156 156 PHE PHE A . n A 1 167 ILE 167 157 157 ILE ILE A . n A 1 168 LYS 168 158 158 LYS LYS A . n A 1 169 ASN 169 159 159 ASN ASN A . n A 1 170 HIS 170 160 160 HIS HIS A . n A 1 171 ASN 171 161 161 ASN ASN A . n A 1 172 LYS 172 162 162 LYS LYS A . n A 1 173 LYS 173 163 163 LYS LYS A . n A 1 174 PRO 174 164 164 PRO PRO A . n A 1 175 ILE 175 165 165 ILE ILE A . n A 1 176 GLY 176 166 166 GLY GLY A . n A 1 177 CYS 177 167 167 CYS CYS A . n A 1 178 THR 178 168 168 THR THR A . n A 1 179 GLN 179 169 169 GLN GLN A . n A 1 180 THR 180 170 170 THR THR A . n B 1 1 MET 1 -9 ? ? ? B . n B 1 2 GLY 2 -8 ? ? ? B . n B 1 3 HIS 3 -7 ? ? ? B . n B 1 4 HIS 4 -6 ? ? ? B . n B 1 5 HIS 5 -5 ? ? ? B . n B 1 6 HIS 6 -4 -4 HIS HIS B . n B 1 7 HIS 7 -3 -3 HIS HIS B . n B 1 8 HIS 8 -2 -2 HIS HIS B . n B 1 9 GLU 9 -1 -1 GLU GLU B . n B 1 10 PHE 10 0 0 PHE PHE B . n B 1 11 MET 11 1 1 MET MET B . n B 1 12 ALA 12 2 2 ALA ALA B . n B 1 13 LYS 13 3 3 LYS LYS B . n B 1 14 ARG 14 4 4 ARG ARG B . n B 1 15 LYS 15 5 5 LYS LYS B . n B 1 16 SER 16 6 6 SER SER B . n B 1 17 ASP 17 7 7 ASP ASP B . n B 1 18 ILE 18 8 8 ILE ILE B . n B 1 19 ILE 19 9 9 ILE ILE B . n B 1 20 LEU 20 10 10 LEU LEU B . n B 1 21 LYS 21 11 11 LYS LYS B . n B 1 22 SER 22 12 12 SER SER B . n B 1 23 VAL 23 13 13 VAL VAL B . n B 1 24 ASP 24 14 14 ASP ASP B . n B 1 25 ASP 25 15 15 ASP ASP B . n B 1 26 LEU 26 16 16 LEU LEU B . n B 1 27 LYS 27 17 17 LYS LYS B . n B 1 28 ASP 28 18 18 ASP ASP B . n B 1 29 GLU 29 19 19 GLU GLU B . n B 1 30 ILE 30 20 20 ILE ILE B . n B 1 31 ASP 31 21 21 ASP ASP B . n B 1 32 TYR 32 22 22 TYR TYR B . n B 1 33 LYS 33 23 23 LYS LYS B . n B 1 34 ASP 34 24 24 ASP ASP B . n B 1 35 PHE 35 25 25 PHE PHE B . n B 1 36 GLU 36 26 26 GLU GLU B . n B 1 37 TYR 37 27 27 TYR TYR B . n B 1 38 LYS 38 28 28 LYS LYS B . n B 1 39 GLU 39 29 29 GLU GLU B . n B 1 40 TYR 40 30 30 TYR TYR B . n B 1 41 PHE 41 31 31 PHE PHE B . n B 1 42 ASN 42 32 32 ASN ASN B . n B 1 43 LEU 43 33 33 LEU LEU B . n B 1 44 LEU 44 34 34 LEU LEU B . n B 1 45 CYS 45 35 35 CYS CYS B . n B 1 46 GLU 46 36 36 GLU GLU B . n B 1 47 LEU 47 37 37 LEU LEU B . n B 1 48 VAL 48 38 38 VAL VAL B . n B 1 49 PRO 49 39 39 PRO PRO B . n B 1 50 ASN 50 40 40 ASN ASN B . n B 1 51 ASN 51 41 41 ASN ASN B . n B 1 52 SER 52 42 42 SER SER B . n B 1 53 LEU 53 43 43 LEU LEU B . n B 1 54 GLU 54 44 44 GLU GLU B . n B 1 55 LYS 55 45 45 LYS LYS B . n B 1 56 LEU 56 46 46 LEU LEU B . n B 1 57 GLU 57 47 47 GLU GLU B . n B 1 58 ILE 58 48 48 ILE ILE B . n B 1 59 ASN 59 49 49 ASN ASN B . n B 1 60 ALA 60 50 50 ALA ALA B . n B 1 61 ILE 61 51 51 ILE ILE B . n B 1 62 ASP 62 52 52 ASP ASP B . n B 1 63 GLU 63 53 53 GLU GLU B . n B 1 64 LYS 64 54 54 LYS LYS B . n B 1 65 ASN 65 55 55 ASN ASN B . n B 1 66 MSE 66 56 56 MSE MSE B . n B 1 67 LYS 67 57 57 LYS LYS B . n B 1 68 ASN 68 58 58 ASN ASN B . n B 1 69 GLU 69 59 59 GLU GLU B . n B 1 70 GLY 70 60 60 GLY GLY B . n B 1 71 LEU 71 61 61 LEU LEU B . n B 1 72 VAL 72 62 62 VAL VAL B . n B 1 73 TYR 73 63 63 TYR TYR B . n B 1 74 VAL 74 64 64 VAL VAL B . n B 1 75 PHE 75 65 65 PHE PHE B . n B 1 76 VAL 76 66 66 VAL VAL B . n B 1 77 ILE 77 67 67 ILE ILE B . n B 1 78 GLN 78 68 68 GLN GLN B . n B 1 79 GLY 79 69 69 GLY GLY B . n B 1 80 LYS 80 70 70 LYS LYS B . n B 1 81 ILE 81 71 71 ILE ILE B . n B 1 82 PHE 82 72 72 PHE PHE B . n B 1 83 LYS 83 73 73 LYS LYS B . n B 1 84 ILE 84 74 74 ILE ILE B . n B 1 85 GLY 85 75 75 GLY GLY B . n B 1 86 HIS 86 76 76 HIS HIS B . n B 1 87 SER 87 77 77 SER SER B . n B 1 88 ILE 88 78 78 ILE ILE B . n B 1 89 THR 89 79 79 THR THR B . n B 1 90 PRO 90 80 80 PRO PRO B . n B 1 91 ILE 91 81 81 ILE ILE B . n B 1 92 THR 92 82 82 THR THR B . n B 1 93 LYS 93 83 83 LYS LYS B . n B 1 94 ARG 94 84 84 ARG ARG B . n B 1 95 VAL 95 85 85 VAL VAL B . n B 1 96 GLN 96 86 86 GLN GLN B . n B 1 97 SER 97 87 87 SER SER B . n B 1 98 TYR 98 88 88 TYR TYR B . n B 1 99 ASN 99 89 89 ASN ASN B . n B 1 100 CYS 100 90 90 CYS CYS B . n B 1 101 GLY 101 91 91 GLY GLY B . n B 1 102 LYS 102 92 92 LYS LYS B . n B 1 103 VAL 103 93 93 VAL VAL B . n B 1 104 GLU 104 94 94 GLU GLU B . n B 1 105 TYR 105 95 95 TYR TYR B . n B 1 106 ARG 106 96 96 ARG ARG B . n B 1 107 LYS 107 97 97 LYS LYS B . n B 1 108 ASN 108 98 98 ASN ASN B . n B 1 109 GLY 109 99 99 GLY GLY B . n B 1 110 THR 110 100 100 THR THR B . n B 1 111 CYS 111 101 101 CYS CYS B . n B 1 112 SER 112 102 102 SER SER B . n B 1 113 THR 113 103 103 THR THR B . n B 1 114 THR 114 104 104 THR THR B . n B 1 115 ASN 115 105 105 ASN ASN B . n B 1 116 TYR 116 106 106 TYR TYR B . n B 1 117 PHE 117 107 107 PHE PHE B . n B 1 118 VAL 118 108 108 VAL VAL B . n B 1 119 LEU 119 109 109 LEU LEU B . n B 1 120 GLN 120 110 110 GLN GLN B . n B 1 121 SER 121 111 111 SER SER B . n B 1 122 LEU 122 112 112 LEU LEU B . n B 1 123 LEU 123 113 113 LEU LEU B . n B 1 124 LYS 124 114 114 LYS LYS B . n B 1 125 ILE 125 115 115 ILE ILE B . n B 1 126 ASN 126 116 116 ASN ASN B . n B 1 127 LYS 127 117 117 LYS LYS B . n B 1 128 ILE 128 118 118 ILE ILE B . n B 1 129 VAL 129 119 119 VAL VAL B . n B 1 130 GLN 130 120 120 GLN GLN B . n B 1 131 VAL 131 121 121 VAL VAL B . n B 1 132 TYR 132 122 122 TYR TYR B . n B 1 133 ALA 133 123 123 ALA ALA B . n B 1 134 PHE 134 124 124 PHE PHE B . n B 1 135 PHE 135 125 125 PHE PHE B . n B 1 136 PRO 136 126 126 PRO PRO B . n B 1 137 GLU 137 127 127 GLU GLU B . n B 1 138 GLN 138 128 128 GLN GLN B . n B 1 139 PRO 139 129 129 PRO PRO B . n B 1 140 THR 140 130 130 THR THR B . n B 1 141 TYR 141 131 131 TYR TYR B . n B 1 142 THR 142 132 132 THR THR B . n B 1 143 LEU 143 133 133 LEU LEU B . n B 1 144 PHE 144 134 134 PHE PHE B . n B 1 145 GLY 145 135 135 GLY GLY B . n B 1 146 LYS 146 136 136 LYS LYS B . n B 1 147 THR 147 137 137 THR THR B . n B 1 148 TYR 148 138 138 TYR TYR B . n B 1 149 GLN 149 139 139 GLN GLN B . n B 1 150 ASP 150 140 140 ASP ASP B . n B 1 151 SER 151 141 141 SER SER B . n B 1 152 PHE 152 142 142 PHE PHE B . n B 1 153 SER 153 143 143 SER SER B . n B 1 154 THR 154 144 144 THR THR B . n B 1 155 SER 155 145 145 SER SER B . n B 1 156 LYS 156 146 146 LYS LYS B . n B 1 157 ARG 157 147 147 ARG ARG B . n B 1 158 ALA 158 148 148 ALA ALA B . n B 1 159 GLU 159 149 149 GLU GLU B . n B 1 160 ASN 160 150 150 ASN ASN B . n B 1 161 VAL 161 151 151 VAL VAL B . n B 1 162 ILE 162 152 152 ILE ILE B . n B 1 163 LEU 163 153 153 LEU LEU B . n B 1 164 GLU 164 154 154 GLU GLU B . n B 1 165 ASN 165 155 155 ASN ASN B . n B 1 166 PHE 166 156 156 PHE PHE B . n B 1 167 ILE 167 157 157 ILE ILE B . n B 1 168 LYS 168 158 158 LYS LYS B . n B 1 169 ASN 169 159 159 ASN ASN B . n B 1 170 HIS 170 160 160 HIS HIS B . n B 1 171 ASN 171 161 161 ASN ASN B . n B 1 172 LYS 172 162 162 LYS LYS B . n B 1 173 LYS 173 163 163 LYS LYS B . n B 1 174 PRO 174 164 164 PRO PRO B . n B 1 175 ILE 175 165 165 ILE ILE B . n B 1 176 GLY 176 166 166 GLY GLY B . n B 1 177 CYS 177 167 167 CYS CYS B . n B 1 178 THR 178 168 168 THR THR B . n B 1 179 GLN 179 169 169 GLN GLN B . n B 1 180 THR 180 170 170 THR THR B . n C 2 1 DG 1 -4 -4 DG G C . n C 2 2 DA 2 -3 -3 DA A C . n C 2 3 DT 3 -2 -2 DT T C . n C 2 4 DC 4 -1 -1 DC C C . n C 2 5 DT 5 0 0 DT T C . n C 2 6 DG 6 1 1 DG G C . n C 2 7 DA 7 2 2 DA A C . n C 2 8 DA 8 3 3 DA A C . n C 2 9 DC 9 4 4 DC C C . n D 3 1 DG 1 -4 -4 DG G D . n D 3 2 DT 2 -3 -3 DT T D . n D 3 3 DT 3 -2 -2 DT T D . n D 3 4 DC 4 -1 -1 DC C D . n D 3 5 DA 5 0 0 DA A D . n D 3 6 DG 6 1 1 DG G D . n D 3 7 DA 7 2 2 DA A D . n D 3 8 DT 8 3 3 DT T D . n D 3 9 DC 9 4 4 DC C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NA 1 171 2 NA NA A . F 5 CL 1 172 3 CL CL A . G 4 NA 1 171 1 NA NA B . H 6 HOH 1 173 1 HOH HOH A . H 6 HOH 2 174 174 HOH HOH A . H 6 HOH 3 175 4 HOH HOH A . H 6 HOH 4 176 9 HOH HOH A . H 6 HOH 5 177 11 HOH HOH A . H 6 HOH 6 178 13 HOH HOH A . H 6 HOH 7 179 14 HOH HOH A . H 6 HOH 8 180 180 HOH HOH A . H 6 HOH 9 181 15 HOH HOH A . H 6 HOH 10 182 20 HOH HOH A . H 6 HOH 11 183 183 HOH HOH A . H 6 HOH 12 184 184 HOH HOH A . H 6 HOH 13 185 21 HOH HOH A . H 6 HOH 14 186 186 HOH HOH A . H 6 HOH 15 187 22 HOH HOH A . H 6 HOH 16 188 188 HOH HOH A . H 6 HOH 17 189 23 HOH HOH A . H 6 HOH 18 190 28 HOH HOH A . H 6 HOH 19 191 29 HOH HOH A . H 6 HOH 20 192 31 HOH HOH A . H 6 HOH 21 193 193 HOH HOH A . H 6 HOH 22 194 32 HOH HOH A . H 6 HOH 23 195 195 HOH HOH A . H 6 HOH 24 196 196 HOH HOH A . H 6 HOH 25 197 197 HOH HOH A . H 6 HOH 26 198 33 HOH HOH A . H 6 HOH 27 199 35 HOH HOH A . H 6 HOH 28 200 37 HOH HOH A . H 6 HOH 29 201 38 HOH HOH A . H 6 HOH 30 202 39 HOH HOH A . H 6 HOH 31 203 203 HOH HOH A . H 6 HOH 32 204 204 HOH HOH A . H 6 HOH 33 205 40 HOH HOH A . H 6 HOH 34 206 42 HOH HOH A . H 6 HOH 35 207 45 HOH HOH A . H 6 HOH 36 208 47 HOH HOH A . H 6 HOH 37 209 49 HOH HOH A . H 6 HOH 38 210 210 HOH HOH A . H 6 HOH 39 211 211 HOH HOH A . H 6 HOH 40 212 212 HOH HOH A . H 6 HOH 41 213 50 HOH HOH A . H 6 HOH 42 214 54 HOH HOH A . H 6 HOH 43 215 215 HOH HOH A . H 6 HOH 44 216 216 HOH HOH A . H 6 HOH 45 217 57 HOH HOH A . H 6 HOH 46 218 59 HOH HOH A . H 6 HOH 47 219 219 HOH HOH A . H 6 HOH 48 220 220 HOH HOH A . H 6 HOH 49 221 61 HOH HOH A . H 6 HOH 50 222 222 HOH HOH A . H 6 HOH 51 223 65 HOH HOH A . H 6 HOH 52 224 224 HOH HOH A . H 6 HOH 53 225 66 HOH HOH A . H 6 HOH 54 226 69 HOH HOH A . H 6 HOH 55 227 70 HOH HOH A . H 6 HOH 56 228 73 HOH HOH A . H 6 HOH 57 229 229 HOH HOH A . H 6 HOH 58 230 230 HOH HOH A . H 6 HOH 59 231 74 HOH HOH A . H 6 HOH 60 232 232 HOH HOH A . H 6 HOH 61 233 78 HOH HOH A . H 6 HOH 62 234 234 HOH HOH A . H 6 HOH 63 235 235 HOH HOH A . H 6 HOH 64 236 236 HOH HOH A . H 6 HOH 65 237 237 HOH HOH A . H 6 HOH 66 238 79 HOH HOH A . H 6 HOH 67 239 83 HOH HOH A . H 6 HOH 68 240 240 HOH HOH A . H 6 HOH 69 241 84 HOH HOH A . H 6 HOH 70 242 85 HOH HOH A . H 6 HOH 71 243 88 HOH HOH A . H 6 HOH 72 244 244 HOH HOH A . H 6 HOH 73 245 89 HOH HOH A . H 6 HOH 74 246 94 HOH HOH A . H 6 HOH 75 247 96 HOH HOH A . H 6 HOH 76 248 97 HOH HOH A . H 6 HOH 77 249 99 HOH HOH A . H 6 HOH 78 250 101 HOH HOH A . H 6 HOH 79 251 102 HOH HOH A . H 6 HOH 80 252 252 HOH HOH A . H 6 HOH 81 253 253 HOH HOH A . H 6 HOH 82 254 103 HOH HOH A . H 6 HOH 83 255 104 HOH HOH A . H 6 HOH 84 256 108 HOH HOH A . H 6 HOH 85 257 109 HOH HOH A . H 6 HOH 86 258 258 HOH HOH A . H 6 HOH 87 259 259 HOH HOH A . H 6 HOH 88 260 111 HOH HOH A . H 6 HOH 89 261 114 HOH HOH A . H 6 HOH 90 262 115 HOH HOH A . H 6 HOH 91 263 263 HOH HOH A . H 6 HOH 92 264 116 HOH HOH A . H 6 HOH 93 265 117 HOH HOH A . H 6 HOH 94 266 119 HOH HOH A . H 6 HOH 95 267 122 HOH HOH A . H 6 HOH 96 268 268 HOH HOH A . H 6 HOH 97 269 123 HOH HOH A . H 6 HOH 98 270 270 HOH HOH A . H 6 HOH 99 271 124 HOH HOH A . H 6 HOH 100 272 272 HOH HOH A . H 6 HOH 101 273 273 HOH HOH A . H 6 HOH 102 274 274 HOH HOH A . H 6 HOH 103 275 125 HOH HOH A . H 6 HOH 104 276 127 HOH HOH A . H 6 HOH 105 277 277 HOH HOH A . H 6 HOH 106 278 278 HOH HOH A . H 6 HOH 107 279 132 HOH HOH A . H 6 HOH 108 280 134 HOH HOH A . H 6 HOH 109 281 137 HOH HOH A . H 6 HOH 110 282 139 HOH HOH A . H 6 HOH 111 283 140 HOH HOH A . H 6 HOH 112 284 284 HOH HOH A . H 6 HOH 113 285 145 HOH HOH A . H 6 HOH 114 286 149 HOH HOH A . H 6 HOH 115 287 287 HOH HOH A . H 6 HOH 116 288 288 HOH HOH A . H 6 HOH 117 289 289 HOH HOH A . H 6 HOH 118 290 290 HOH HOH A . H 6 HOH 119 291 150 HOH HOH A . H 6 HOH 120 292 292 HOH HOH A . H 6 HOH 121 293 152 HOH HOH A . H 6 HOH 122 294 294 HOH HOH A . H 6 HOH 123 295 157 HOH HOH A . H 6 HOH 124 296 296 HOH HOH A . H 6 HOH 125 297 159 HOH HOH A . H 6 HOH 126 298 298 HOH HOH A . H 6 HOH 127 299 160 HOH HOH A . H 6 HOH 128 300 163 HOH HOH A . H 6 HOH 129 301 165 HOH HOH A . H 6 HOH 130 302 302 HOH HOH A . H 6 HOH 131 303 303 HOH HOH A . H 6 HOH 132 304 168 HOH HOH A . H 6 HOH 133 305 305 HOH HOH A . H 6 HOH 134 306 172 HOH HOH A . H 6 HOH 135 307 307 HOH HOH A . H 6 HOH 136 310 310 HOH HOH A . H 6 HOH 137 311 311 HOH HOH A . H 6 HOH 138 318 318 HOH HOH A . H 6 HOH 139 323 323 HOH HOH A . H 6 HOH 140 330 330 HOH HOH A . H 6 HOH 141 333 333 HOH HOH A . H 6 HOH 142 338 338 HOH HOH A . H 6 HOH 143 341 341 HOH HOH A . H 6 HOH 144 343 343 HOH HOH A . H 6 HOH 145 344 344 HOH HOH A . H 6 HOH 146 347 347 HOH HOH A . H 6 HOH 147 348 348 HOH HOH A . H 6 HOH 148 355 355 HOH HOH A . H 6 HOH 149 360 360 HOH HOH A . H 6 HOH 150 366 366 HOH HOH A . H 6 HOH 151 371 371 HOH HOH A . H 6 HOH 152 374 374 HOH HOH A . H 6 HOH 153 375 375 HOH HOH A . H 6 HOH 154 379 379 HOH HOH A . H 6 HOH 155 380 380 HOH HOH A . H 6 HOH 156 383 383 HOH HOH A . H 6 HOH 157 384 384 HOH HOH A . H 6 HOH 158 386 386 HOH HOH A . H 6 HOH 159 388 388 HOH HOH A . H 6 HOH 160 390 390 HOH HOH A . H 6 HOH 161 407 407 HOH HOH A . H 6 HOH 162 409 409 HOH HOH A . H 6 HOH 163 410 410 HOH HOH A . H 6 HOH 164 420 420 HOH HOH A . I 6 HOH 1 172 0 HOH HOH B . I 6 HOH 2 173 3 HOH HOH B . I 6 HOH 3 174 5 HOH HOH B . I 6 HOH 4 175 175 HOH HOH B . I 6 HOH 5 176 176 HOH HOH B . I 6 HOH 6 177 177 HOH HOH B . I 6 HOH 7 178 6 HOH HOH B . I 6 HOH 8 179 179 HOH HOH B . I 6 HOH 9 180 12 HOH HOH B . I 6 HOH 10 181 181 HOH HOH B . I 6 HOH 11 182 182 HOH HOH B . I 6 HOH 12 183 16 HOH HOH B . I 6 HOH 13 184 17 HOH HOH B . I 6 HOH 14 185 185 HOH HOH B . I 6 HOH 15 186 18 HOH HOH B . I 6 HOH 16 187 187 HOH HOH B . I 6 HOH 17 188 19 HOH HOH B . I 6 HOH 18 189 189 HOH HOH B . I 6 HOH 19 190 26 HOH HOH B . I 6 HOH 20 191 191 HOH HOH B . I 6 HOH 21 192 27 HOH HOH B . I 6 HOH 22 193 34 HOH HOH B . I 6 HOH 23 194 194 HOH HOH B . I 6 HOH 24 195 43 HOH HOH B . I 6 HOH 25 196 44 HOH HOH B . I 6 HOH 26 197 46 HOH HOH B . I 6 HOH 27 198 198 HOH HOH B . I 6 HOH 28 199 48 HOH HOH B . I 6 HOH 29 200 200 HOH HOH B . I 6 HOH 30 201 201 HOH HOH B . I 6 HOH 31 202 202 HOH HOH B . I 6 HOH 32 203 51 HOH HOH B . I 6 HOH 33 204 53 HOH HOH B . I 6 HOH 34 205 205 HOH HOH B . I 6 HOH 35 206 206 HOH HOH B . I 6 HOH 36 207 207 HOH HOH B . I 6 HOH 37 208 208 HOH HOH B . I 6 HOH 38 209 209 HOH HOH B . I 6 HOH 39 210 55 HOH HOH B . I 6 HOH 40 211 56 HOH HOH B . I 6 HOH 41 212 63 HOH HOH B . I 6 HOH 42 213 213 HOH HOH B . I 6 HOH 43 214 214 HOH HOH B . I 6 HOH 44 215 64 HOH HOH B . I 6 HOH 45 216 72 HOH HOH B . I 6 HOH 46 217 217 HOH HOH B . I 6 HOH 47 218 218 HOH HOH B . I 6 HOH 48 219 75 HOH HOH B . I 6 HOH 49 220 77 HOH HOH B . I 6 HOH 50 221 80 HOH HOH B . I 6 HOH 51 222 82 HOH HOH B . I 6 HOH 52 223 86 HOH HOH B . I 6 HOH 53 224 90 HOH HOH B . I 6 HOH 54 225 92 HOH HOH B . I 6 HOH 55 226 226 HOH HOH B . I 6 HOH 56 227 227 HOH HOH B . I 6 HOH 57 228 95 HOH HOH B . I 6 HOH 58 229 98 HOH HOH B . I 6 HOH 59 230 100 HOH HOH B . I 6 HOH 60 231 231 HOH HOH B . I 6 HOH 61 232 105 HOH HOH B . I 6 HOH 62 233 106 HOH HOH B . I 6 HOH 63 234 110 HOH HOH B . I 6 HOH 64 235 112 HOH HOH B . I 6 HOH 65 236 118 HOH HOH B . I 6 HOH 66 237 120 HOH HOH B . I 6 HOH 67 238 238 HOH HOH B . I 6 HOH 68 239 121 HOH HOH B . I 6 HOH 69 240 128 HOH HOH B . I 6 HOH 70 241 241 HOH HOH B . I 6 HOH 71 242 242 HOH HOH B . I 6 HOH 72 243 243 HOH HOH B . I 6 HOH 73 244 130 HOH HOH B . I 6 HOH 74 245 245 HOH HOH B . I 6 HOH 75 246 131 HOH HOH B . I 6 HOH 76 247 136 HOH HOH B . I 6 HOH 77 248 248 HOH HOH B . I 6 HOH 78 249 249 HOH HOH B . I 6 HOH 79 250 250 HOH HOH B . I 6 HOH 80 251 138 HOH HOH B . I 6 HOH 81 252 141 HOH HOH B . I 6 HOH 82 253 142 HOH HOH B . I 6 HOH 83 254 254 HOH HOH B . I 6 HOH 84 255 255 HOH HOH B . I 6 HOH 85 256 256 HOH HOH B . I 6 HOH 86 257 257 HOH HOH B . I 6 HOH 87 258 143 HOH HOH B . I 6 HOH 88 259 144 HOH HOH B . I 6 HOH 89 260 146 HOH HOH B . I 6 HOH 90 261 147 HOH HOH B . I 6 HOH 91 262 148 HOH HOH B . I 6 HOH 92 263 151 HOH HOH B . I 6 HOH 93 264 154 HOH HOH B . I 6 HOH 94 265 265 HOH HOH B . I 6 HOH 95 266 266 HOH HOH B . I 6 HOH 96 267 267 HOH HOH B . I 6 HOH 97 268 155 HOH HOH B . I 6 HOH 98 269 269 HOH HOH B . I 6 HOH 99 270 156 HOH HOH B . I 6 HOH 100 271 158 HOH HOH B . I 6 HOH 101 272 161 HOH HOH B . I 6 HOH 102 273 162 HOH HOH B . I 6 HOH 103 274 166 HOH HOH B . I 6 HOH 104 275 275 HOH HOH B . I 6 HOH 105 276 167 HOH HOH B . I 6 HOH 106 277 169 HOH HOH B . I 6 HOH 107 278 171 HOH HOH B . I 6 HOH 108 279 279 HOH HOH B . I 6 HOH 109 280 280 HOH HOH B . I 6 HOH 110 281 281 HOH HOH B . I 6 HOH 111 282 282 HOH HOH B . I 6 HOH 112 283 283 HOH HOH B . I 6 HOH 113 285 285 HOH HOH B . I 6 HOH 114 286 286 HOH HOH B . I 6 HOH 115 291 291 HOH HOH B . I 6 HOH 116 293 293 HOH HOH B . I 6 HOH 117 313 313 HOH HOH B . I 6 HOH 118 314 314 HOH HOH B . I 6 HOH 119 317 317 HOH HOH B . I 6 HOH 120 319 319 HOH HOH B . I 6 HOH 121 320 320 HOH HOH B . I 6 HOH 122 321 321 HOH HOH B . I 6 HOH 123 322 322 HOH HOH B . I 6 HOH 124 327 327 HOH HOH B . I 6 HOH 125 328 328 HOH HOH B . I 6 HOH 126 332 332 HOH HOH B . I 6 HOH 127 335 335 HOH HOH B . I 6 HOH 128 351 351 HOH HOH B . I 6 HOH 129 354 354 HOH HOH B . I 6 HOH 130 359 359 HOH HOH B . I 6 HOH 131 368 368 HOH HOH B . I 6 HOH 132 372 372 HOH HOH B . I 6 HOH 133 373 373 HOH HOH B . I 6 HOH 134 378 378 HOH HOH B . I 6 HOH 135 381 381 HOH HOH B . I 6 HOH 136 385 385 HOH HOH B . I 6 HOH 137 393 393 HOH HOH B . I 6 HOH 138 403 403 HOH HOH B . I 6 HOH 139 404 404 HOH HOH B . I 6 HOH 140 419 419 HOH HOH B . J 6 HOH 1 5 2 HOH HOH C . J 6 HOH 2 7 7 HOH HOH C . J 6 HOH 3 10 10 HOH HOH C . J 6 HOH 4 36 36 HOH HOH C . J 6 HOH 5 52 52 HOH HOH C . J 6 HOH 6 68 68 HOH HOH C . J 6 HOH 7 71 71 HOH HOH C . J 6 HOH 8 91 91 HOH HOH C . J 6 HOH 9 93 93 HOH HOH C . J 6 HOH 10 107 107 HOH HOH C . J 6 HOH 11 113 113 HOH HOH C . J 6 HOH 12 126 126 HOH HOH C . J 6 HOH 13 133 133 HOH HOH C . J 6 HOH 14 135 135 HOH HOH C . J 6 HOH 15 170 170 HOH HOH C . J 6 HOH 16 190 190 HOH HOH C . J 6 HOH 17 221 221 HOH HOH C . J 6 HOH 18 233 233 HOH HOH C . J 6 HOH 19 251 251 HOH HOH C . J 6 HOH 20 260 260 HOH HOH C . J 6 HOH 21 262 262 HOH HOH C . J 6 HOH 22 264 264 HOH HOH C . J 6 HOH 23 297 297 HOH HOH C . J 6 HOH 24 306 306 HOH HOH C . J 6 HOH 25 308 308 HOH HOH C . J 6 HOH 26 309 309 HOH HOH C . J 6 HOH 27 312 312 HOH HOH C . J 6 HOH 28 324 324 HOH HOH C . J 6 HOH 29 401 401 HOH HOH C . K 6 HOH 1 8 8 HOH HOH D . K 6 HOH 2 24 24 HOH HOH D . K 6 HOH 3 25 25 HOH HOH D . K 6 HOH 4 30 30 HOH HOH D . K 6 HOH 5 41 41 HOH HOH D . K 6 HOH 6 58 58 HOH HOH D . K 6 HOH 7 60 60 HOH HOH D . K 6 HOH 8 62 62 HOH HOH D . K 6 HOH 9 67 67 HOH HOH D . K 6 HOH 10 76 76 HOH HOH D . K 6 HOH 11 81 81 HOH HOH D . K 6 HOH 12 87 87 HOH HOH D . K 6 HOH 13 129 129 HOH HOH D . K 6 HOH 14 164 164 HOH HOH D . K 6 HOH 15 173 173 HOH HOH D . K 6 HOH 16 178 178 HOH HOH D . K 6 HOH 17 192 192 HOH HOH D . K 6 HOH 18 199 199 HOH HOH D . K 6 HOH 19 223 223 HOH HOH D . K 6 HOH 20 228 228 HOH HOH D . K 6 HOH 21 239 239 HOH HOH D . K 6 HOH 22 246 246 HOH HOH D . K 6 HOH 23 247 247 HOH HOH D . K 6 HOH 24 271 271 HOH HOH D . K 6 HOH 25 356 356 HOH HOH D . K 6 HOH 26 399 399 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 66 A MSE 56 ? MET SELENOMETHIONINE 2 B MSE 66 B MSE 56 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10420 ? 1 MORE -73 ? 1 'SSA (A^2)' 16550 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-10-20 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 0.4550 15.7510 82.6630 -0.0631 0.0048 -0.0250 -0.0025 -0.0100 -0.0120 0.0917 1.0832 1.1944 0.0192 0.3307 0.0189 0.0103 -0.0140 -0.0083 -0.0347 -0.0140 0.0090 0.0626 0.0167 0.0038 'X-RAY DIFFRACTION' 2 ? refined -0.0680 12.0570 98.1700 -0.0692 0.0341 -0.0381 -0.0242 -0.0101 -0.0154 0.3773 0.8053 1.4591 -0.1890 0.3769 -0.2043 0.0357 -0.0657 0.0044 0.0035 -0.0107 0.0894 0.1067 -0.1489 -0.0250 'X-RAY DIFFRACTION' 3 ? refined 0.8600 10.9660 67.3900 -0.0779 0.0461 -0.0601 0.0030 -0.0220 -0.0093 0.7700 0.8696 1.2098 0.1204 0.3822 0.3829 0.0339 0.1408 -0.0048 0.0154 0.0268 -0.0387 0.0346 0.1211 -0.0607 'X-RAY DIFFRACTION' 4 ? refined 0.1590 -7.6240 83.4610 0.2383 -0.1078 -0.0004 -0.0031 -0.1090 -0.0099 4.2513 3.6681 6.0910 0.0483 1.1016 0.2765 0.0779 0.0026 -0.4532 0.0911 0.0771 0.0203 1.0411 0.0084 -0.1550 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 C -4 ? ? C 4 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 D -4 ? ? D 4 ? ? ? ? 'X-RAY DIFFRACTION' 3 2 A -9 ? ? A 127 ? ? ? ? 'X-RAY DIFFRACTION' 4 2 B 143 ? ? B 170 ? ? ? ? 'X-RAY DIFFRACTION' 5 3 B -9 ? ? B 127 ? ? ? ? 'X-RAY DIFFRACTION' 6 3 A 143 ? ? A 170 ? ? ? ? 'X-RAY DIFFRACTION' 7 4 A 128 ? ? A 142 ? ? ? ? 'X-RAY DIFFRACTION' 8 4 B 128 ? ? B 142 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXCD phasing . ? 1 SHELXD phasing . ? 2 SHELXE 'model building' . ? 3 MLPHARE phasing . ? 4 DM 'model building' . ? 5 ARP/wARP 'model building' . ? 6 REFMAC refinement 5.2.0019 ? 7 DENZO 'data reduction' . ? 8 SCALEPACK 'data scaling' . ? 9 DM phasing . ? 10 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ;BIOLOGICAL UNIT CONTAINS PROTEIN CHAINS A AND B, DNA STRANDS C AND D. THE TETRAMER (ACCORDING TO PDB CONVENTIONS) IS A COMPLEX OF THE DIMERIC RESTRICTION ENZYME WITH ITS SUBSTRATE, DOUBLE STRANDED DNA. THE NATURAL PROTEIN OLIGOMERIZATION STATE IS A DIMER - THE DNA IS A SUBSTRATE. UNDER THE PHYSIOLOGICAL CONDITIONS THE PROTEIN DIMER BINDS DOUBLE STRANDED DNA AND CLEAVES IT TO TWO DOUBLE STRANDED DNA FRAGMENTS. ; # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" D DG 1 ? A "C2'" D DG 1 ? A "C1'" D DG 1 ? A 96.61 102.40 -5.79 0.80 N 2 1 "C3'" D DG 1 ? B "C2'" D DG 1 ? B "C1'" D DG 1 ? B 96.89 102.40 -5.51 0.80 N 3 1 "O4'" D DG 1 ? A "C1'" D DG 1 ? A N9 D DG 1 ? A 110.38 108.30 2.08 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 168 ? ? -121.75 -50.99 2 1 THR B 168 ? ? -124.74 -51.46 3 1 THR B 168 ? ? -124.74 -52.88 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -9 ? A MET 1 2 1 Y 1 A GLY -8 ? A GLY 2 3 1 Y 1 A HIS -7 ? A HIS 3 4 1 Y 1 A HIS -6 ? A HIS 4 5 1 Y 1 B MET -9 ? B MET 1 6 1 Y 1 B GLY -8 ? B GLY 2 7 1 Y 1 B HIS -7 ? B HIS 3 8 1 Y 1 B HIS -6 ? B HIS 4 9 1 Y 1 B HIS -5 ? B HIS 5 # _ndb_struct_conf_na.entry_id 3OQG _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DG 1 1_555 D DC 9 1_555 -0.274 -0.179 -0.336 -11.121 -4.597 3.878 1 C_DG-4:DC4_D C -4 ? D 4 ? 19 1 1 C DA 2 1_555 D DT 8 1_555 -0.234 -0.198 -0.165 3.521 11.853 0.550 2 C_DA-3:DT3_D C -3 ? D 3 ? 20 1 1 C DT 3 1_555 D DA 7 1_555 0.374 -0.017 0.213 -5.330 -7.564 8.559 3 C_DT-2:DA2_D C -2 ? D 2 ? 20 1 1 C DC 4 1_555 D DG 6 1_555 0.012 -0.239 0.156 -8.227 0.235 -2.933 4 C_DC-1:DG1_D C -1 ? D 1 ? 19 1 1 C DT 5 1_555 D DA 5 1_555 -0.165 -0.160 -0.190 5.641 15.259 3.074 5 C_DT0:DA0_D C 0 ? D 0 ? 20 1 1 C DG 6 1_555 D DC 4 1_555 -0.131 -0.017 -0.340 4.706 -2.797 1.439 6 C_DG1:DC-1_D C 1 ? D -1 ? 19 1 1 C DA 7 1_555 D DT 3 1_555 0.066 -0.082 -0.230 -13.537 -4.326 1.070 7 C_DA2:DT-2_D C 2 ? D -2 ? 20 1 1 C DA 8 1_555 D DT 2 1_555 -0.003 -0.167 -0.630 -0.449 8.028 2.325 8 C_DA3:DT-3_D C 3 ? D -3 ? 20 1 1 C DC 9 1_555 D DG 1 1_555 0.173 -0.304 -0.537 8.878 6.024 -1.108 9 C_DC4:DG-4_D C 4 ? D -4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DG 1 1_555 D DC 9 1_555 C DA 2 1_555 D DT 8 1_555 0.174 -1.095 3.112 -0.641 -3.613 29.554 -1.397 -0.468 3.215 -7.049 1.251 29.776 1 CC_DG-4DA-3:DT3DC4_DD C -4 ? D 4 ? C -3 ? D 3 ? 1 C DA 2 1_555 D DT 8 1_555 C DT 3 1_555 D DA 7 1_555 -0.008 -1.372 4.391 1.013 -19.244 33.170 1.453 0.199 4.499 -30.701 -1.617 38.225 2 CC_DA-3DT-2:DA2DT3_DD C -3 ? D 3 ? C -2 ? D 2 ? 1 C DT 3 1_555 D DA 7 1_555 C DC 4 1_555 D DG 6 1_555 -0.122 -0.899 3.472 -0.819 -6.811 38.716 -0.458 0.076 3.575 -10.176 1.223 39.296 3 CC_DT-2DC-1:DG1DA2_DD C -2 ? D 2 ? C -1 ? D 1 ? 1 C DC 4 1_555 D DG 6 1_555 C DT 5 1_555 D DA 5 1_555 -0.422 -1.351 3.239 -3.185 -5.150 27.363 -1.530 0.091 3.456 -10.720 6.630 28.012 4 CC_DC-1DT0:DA0DG1_DD C -1 ? D 1 ? C 0 ? D 0 ? 1 C DT 5 1_555 D DA 5 1_555 C DG 6 1_555 D DC 4 1_555 0.517 -1.078 3.743 4.462 -8.314 26.794 0.115 0.186 3.928 -17.276 -9.272 28.378 5 CC_DT0DG1:DC-1DA0_DD C 0 ? D 0 ? C 1 ? D -1 ? 1 C DG 6 1_555 D DC 4 1_555 C DA 7 1_555 D DT 3 1_555 -0.233 -1.044 3.909 1.079 -4.253 42.498 -0.918 0.450 3.984 -5.848 -1.484 42.714 6 CC_DG1DA2:DT-2DC-1_DD C 1 ? D -1 ? C 2 ? D -2 ? 1 C DA 7 1_555 D DT 3 1_555 C DA 8 1_555 D DT 2 1_555 0.464 -0.838 3.791 2.029 -24.735 31.354 2.407 -0.383 3.541 -39.024 -3.200 39.794 7 CC_DA2DA3:DT-3DT-2_DD C 2 ? D -2 ? C 3 ? D -3 ? 1 C DA 8 1_555 D DT 2 1_555 C DC 9 1_555 D DG 1 1_555 0.482 -1.546 3.312 -0.979 1.896 29.194 -3.468 -1.165 3.190 3.756 1.938 29.270 8 CC_DA3DC4:DG-4DT-3_DD C 3 ? D -3 ? C 4 ? D -4 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'SODIUM ION' NA 5 'CHLORIDE ION' CL 6 water HOH #