HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 03-SEP-10 3OQQ TITLE CRYSTAL STRUCTURE OF A PUTATIVE LIPOPROTEIN (BACOVA_00967) FROM TITLE 2 BACTEROIDES OVATUS AT 2.08 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE LIPOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 411476; SOURCE 4 STRAIN: ATCC 8483; SOURCE 5 GENE: BACOVA_00967; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS EXTRACELLULAR PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 01-FEB-23 3OQQ 1 REMARK SEQADV LINK REVDAT 2 25-OCT-17 3OQQ 1 REMARK REVDAT 1 14-SEP-11 3OQQ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE LIPOPROTEIN (BACOVA_00967) JRNL TITL 2 FROM BACTEROIDES OVATUS AT 2.08 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 28586 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1449 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.16 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3011 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1876 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2881 REMARK 3 BIN R VALUE (WORKING SET) : 0.1848 REMARK 3 BIN FREE R VALUE : 0.2556 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.32 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 130 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3223 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 301 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.17710 REMARK 3 B22 (A**2) : -3.79280 REMARK 3 B33 (A**2) : -1.38430 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.85750 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3328 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4517 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1539 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 95 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 478 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3328 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 431 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4072 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.93 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.91 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A| 40 - 456 } REMARK 3 ORIGIN FOR THE GROUP (A): 11.7092 -0.3490 25.9619 REMARK 3 T TENSOR REMARK 3 T11: -0.1042 T22: 0.0150 REMARK 3 T33: -0.0997 T12: 0.0044 REMARK 3 T13: 0.0103 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.4399 L22: 0.4378 REMARK 3 L33: 0.3739 L12: 0.2403 REMARK 3 L13: -0.0677 L23: 0.0674 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: -0.1222 S13: -0.0968 REMARK 3 S21: 0.0286 S22: -0.0233 S23: -0.0755 REMARK 3 S31: 0.0376 S32: 0.0136 S33: 0.0042 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. CALCIUM (CA), ACETATE, POLYETHYLENE GLYCOL FRAGMENTS REMARK 3 (PGE) MODELED ARE PRESENT PROTEIN/CRYSTALLIZATION/CRYO BUFFER. REMARK 3 4. RAMACHANDRAN OUTLIERS (A66 AND A210) ARE SUPPORTED BY REMARK 3 DENSITY. 5. THE MAD PHASES WERE USED AS RESTRAINTS DURING REMARK 3 REFINEMENT. REMARK 4 REMARK 4 3OQQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-10; 22-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.0; 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; SSRL REMARK 200 BEAMLINE : BL9-2; BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97903; 0.97918,0.91837 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR; REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR; FLAT REMARK 200 COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD; MARMOSAIC REMARK 200 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28606 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 44.623 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.56700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THREE-WAVELENGTH MAD PHASES WERE OBTAINED FROM TWO REMARK 200 CRYSTALS. THE PEAK DATA WERE FROM ONE CRYSTAL DIFFRACTING TO REMARK 200 2.08 A. THE INFLECTION AND REMOTE DATA WERE FROM ANOTHER CRYSTAL REMARK 200 DIFFRACTING TO 2.6 A. THE PEAK DATA (FROM THE HIGHER RESOLUTION REMARK 200 CRYSTAL) WERE USED FOR REFINEMENT. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CA(OAC)2, 20.0% PEG-1000, 0.1M REMARK 280 IMIDAZOLE PH 8.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, REMARK 280 TEMPERATURE 277K, VAPOR DIFFUSION, SITTING DROP. 0.2M CA(OAC)2, REMARK 280 20.0% PEG-1000, 0.1M IMIDAZOLE PH 8.0, VAPOR DIFFUSION,SITTING REMARK 280 DROP,NANODROP, TEMPERATURE 277K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.32000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.29000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.32000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 59.29000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT REMARK 300 SCATTERING SUPPORTS THE ASSIGNMENT OF A MONOMER AS A SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C ACT A 461 LIES ON A SPECIAL POSITION. REMARK 375 CH3 ACT A 461 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 737 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 738 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASN A 23 REMARK 465 GLU A 24 REMARK 465 LEU A 25 REMARK 465 GLU A 26 REMARK 465 LYS A 27 REMARK 465 GLY A 28 REMARK 465 ASN A 29 REMARK 465 ASP A 30 REMARK 465 GLY A 31 REMARK 465 SER A 32 REMARK 465 GLY A 33 REMARK 465 THR A 34 REMARK 465 VAL A 35 REMARK 465 ASP A 36 REMARK 465 PRO A 37 REMARK 465 VAL A 38 REMARK 465 ASN A 39 REMARK 465 ARG A 104 REMARK 465 GLY A 105 REMARK 465 VAL A 106 REMARK 465 ASP A 107 REMARK 465 GLN A 108 REMARK 465 SER A 109 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 80 CE NZ REMARK 470 SER A 103 OG REMARK 470 THR A 110 OG1 CG2 REMARK 470 THR A 190 OG1 CG2 REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 GLU A 336 CG CD OE1 OE2 REMARK 470 ARG A 454 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 66 -84.31 71.13 REMARK 500 ASN A 113 46.34 -146.15 REMARK 500 ASN A 262 42.51 -149.49 REMARK 500 MSE A 305 -154.02 62.47 REMARK 500 ASN A 446 76.84 -102.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PGE A 463 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 460 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 135 OD1 REMARK 620 2 ASP A 138 OD1 107.5 REMARK 620 3 ASP A 138 OD2 90.7 50.8 REMARK 620 4 GLN A 185 OE1 93.6 128.8 83.8 REMARK 620 5 HOH A 472 O 94.8 75.4 124.8 150.0 REMARK 620 6 HOH A 677 O 163.2 88.7 96.3 72.2 93.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 458 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 153 OE2 REMARK 620 2 GLU A 153 OE1 55.8 REMARK 620 3 ASP A 167 OD1 78.7 129.4 REMARK 620 4 ASP A 170 OD2 79.7 76.9 118.6 REMARK 620 5 ASP A 170 OD1 91.0 123.3 73.2 50.6 REMARK 620 6 HOH A 477 O 95.9 83.8 79.8 159.1 150.2 REMARK 620 7 HOH A 494 O 128.4 74.8 152.7 75.4 106.0 92.2 REMARK 620 8 HOH A 508 O 158.6 145.4 82.6 100.7 73.6 90.8 71.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 457 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 167 OD2 REMARK 620 2 ASP A 167 OD1 50.2 REMARK 620 3 ASN A 169 OD1 83.1 76.2 REMARK 620 4 ASP A 170 OD1 122.9 72.7 83.8 REMARK 620 5 GLY A 207 O 159.5 150.2 102.0 77.5 REMARK 620 6 GLU A 418 OE1 76.7 123.0 78.6 151.9 84.8 REMARK 620 7 GLU A 418 OE2 81.3 123.4 131.3 142.0 80.6 52.9 REMARK 620 8 HOH A 508 O 90.6 73.7 145.3 71.2 95.8 133.0 80.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 459 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 449 OD1 REMARK 620 2 ASP A 449 OD2 53.3 REMARK 620 3 ACT A 461 OXT 84.4 92.7 REMARK 620 4 HOH A 616 O 100.0 87.2 174.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 457 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 458 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 459 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 460 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 461 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 462 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 463 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 417100 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 23-456) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3OQQ A 23 456 UNP A7LT28 A7LT28_BACOV 23 456 SEQADV 3OQQ GLY A 0 UNP A7LT28 EXPRESSION TAG SEQRES 1 A 435 GLY ASN GLU LEU GLU LYS GLY ASN ASP GLY SER GLY THR SEQRES 2 A 435 VAL ASP PRO VAL ASN ALA SER THR LEU VAL ASN VAL TYR SEQRES 3 A 435 SER ASP LYS SER GLY SER GLU ALA SER LEU LEU VAL GLY SEQRES 4 A 435 ASP VAL LEU VAL LYS ASP SER ARG THR LEU THR LEU ASN SEQRES 5 A 435 VAL PRO ALA ALA CYS GLU LYS VAL TYR MSE LYS TYR ASN SEQRES 6 A 435 THR VAL SER GLY THR GLU ALA THR LYS GLU PHE ALA LEU SEQRES 7 A 435 SER PRO VAL SER ARG GLY VAL ASP GLN SER THR GLY PHE SEQRES 8 A 435 ASN PHE GLU THR ASN ARG LEU ALA SER VAL THR LEU ALA SEQRES 9 A 435 LEU PRO GLU ASP ALA VAL GLN PRO THR ASN GLU THR ASP SEQRES 10 A 435 GLN GLY TYR LEU PHE TYR HIS ASN THR GLY VAL VAL MSE SEQRES 11 A 435 PHE GLU ASP GLY TRP PRO ILE GLN LEU ASP SER TRP TYR SEQRES 12 A 435 ASP GLU ASP PHE ASN ASP VAL VAL PHE GLU TYR ASP LEU SEQRES 13 A 435 LYS VAL THR GLU CYS HIS SER GLN GLN MSE MSE GLU THR SEQRES 14 A 435 VAL GLY GLY LYS GLU GLU LEU LEU LEU THR LEU ASP VAL SEQRES 15 A 435 ARG ALA VAL GLY GLY ILE TYR PRO THR VAL LEU GLY VAL SEQRES 16 A 435 VAL LEU ASP GLY LEU LYS SER GLU TYR VAL ASP ARG ILE SEQRES 17 A 435 THR ALA SER LEU ILE LEU LYS GLY GLY GLN GLY THR MSE SEQRES 18 A 435 THR ASP LEU ALA LYS GLU GLU LEU SER THR LYS ASN ILE SEQRES 19 A 435 VAL LYS VAL GLU ASN LYS ASN TRP ASN TRP SER ASN ASP SEQRES 20 A 435 THR ARG LYS GLU PRO ARG PHE ALA ILE LEU THR VAL ASP SEQRES 21 A 435 LYS ALA GLN ALA GLU GLY THR VAL ILE THR LEU ASP GLY SEQRES 22 A 435 LEU THR SER LEU MSE ASP ASN ASN GLN ASP MSE PHE GLN SEQRES 23 A 435 VAL THR GLN GLY LYS VAL ARG GLU GLY LEU PRO MSE LEU SEQRES 24 A 435 ARG ALA GLU VAL ARG LEU ILE GLY LYS GLU GLY LEU THR SEQRES 25 A 435 GLY ALA GLU ARG ASP ALA GLN LEU ALA ALA PHE ARG GLU SEQRES 26 A 435 LEU ILE LEU ASP THR ASN ARG GLN ASN PHE PHE ILE LYS SEQRES 27 A 435 VAL ASN GLY GLY LYS GLU ILE HIS MSE ARG GLY TYR ALA SEQRES 28 A 435 PRO THR SER ALA TYR LYS ALA GLU TYR GLU ALA LEU VAL SEQRES 29 A 435 ALA GLY ASP THR THR LEU ASP ALA ASN VAL TYR TYR SER SEQRES 30 A 435 ASN THR LYS GLY SER THR TRP GLY VAL LYS LEU PRO VAL SEQRES 31 A 435 GLY THR ARG HIS ALA TYR GLU ARG VAL PRO PHE ARG GLU SEQRES 32 A 435 ALA TYR PRO ASP PHE THR LYS TRP VAL ASP SER LYS GLY SEQRES 33 A 435 VAL SER ASN GLN LYS TRP TYR GLU ASN PHE VAL ASP GLU SEQRES 34 A 435 LYS THR ILE ARG TYR TRP MODRES 3OQQ MSE A 83 MET SELENOMETHIONINE MODRES 3OQQ MSE A 151 MET SELENOMETHIONINE MODRES 3OQQ MSE A 187 MET SELENOMETHIONINE MODRES 3OQQ MSE A 188 MET SELENOMETHIONINE MODRES 3OQQ MSE A 242 MET SELENOMETHIONINE MODRES 3OQQ MSE A 299 MET SELENOMETHIONINE MODRES 3OQQ MSE A 305 MET SELENOMETHIONINE MODRES 3OQQ MSE A 319 MET SELENOMETHIONINE MODRES 3OQQ MSE A 368 MET SELENOMETHIONINE HET MSE A 83 8 HET MSE A 151 8 HET MSE A 187 8 HET MSE A 188 8 HET MSE A 242 8 HET MSE A 299 8 HET MSE A 305 8 HET MSE A 319 8 HET MSE A 368 8 HET CA A 457 1 HET CA A 458 1 HET CA A 459 1 HET CA A 460 1 HET ACT A 461 4 HET PGE A 462 10 HET PGE A 463 7 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM PGE TRIETHYLENE GLYCOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 CA 4(CA 2+) FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 PGE 2(C6 H14 O4) FORMUL 9 HOH *301(H2 O) HELIX 1 1 SER A 162 GLU A 166 5 5 HELIX 2 2 LYS A 222 GLU A 224 5 3 HELIX 3 3 LEU A 295 LEU A 298 5 4 HELIX 4 4 GLY A 334 ASP A 350 1 17 HELIX 5 5 TYR A 377 ALA A 386 1 10 HELIX 6 6 PRO A 421 TYR A 426 1 6 HELIX 7 7 ASP A 428 SER A 435 1 8 HELIX 8 8 LYS A 442 ASN A 446 5 5 HELIX 9 9 VAL A 448 GLU A 450 5 3 SHEET 1 A10 GLU A 92 ALA A 98 0 SHEET 2 A10 LYS A 80 ASN A 86 -1 N TYR A 85 O ALA A 93 SHEET 3 A10 VAL A 44 TYR A 47 -1 N ASN A 45 O LYS A 84 SHEET 4 A10 LEU A 57 VAL A 62 -1 O LEU A 58 N VAL A 46 SHEET 5 A10 PHE A 143 PHE A 152 -1 O PHE A 143 N GLY A 60 SHEET 6 A10 VAL A 171 CYS A 182 -1 O PHE A 173 N VAL A 150 SHEET 7 A10 LYS A 194 ALA A 205 -1 O ASP A 202 N GLU A 174 SHEET 8 A10 MSE A 319 GLY A 328 -1 O GLY A 328 N GLU A 195 SHEET 9 A10 VAL A 226 LYS A 236 -1 N ILE A 234 O ARG A 321 SHEET 10 A10 MSE A 242 SER A 251 -1 O LEU A 245 N LEU A 233 SHEET 1 B 6 GLU A 92 ALA A 98 0 SHEET 2 B 6 LYS A 80 ASN A 86 -1 N TYR A 85 O ALA A 93 SHEET 3 B 6 VAL A 44 TYR A 47 -1 N ASN A 45 O LYS A 84 SHEET 4 B 6 LEU A 57 VAL A 62 -1 O LEU A 58 N VAL A 46 SHEET 5 B 6 PHE A 143 PHE A 152 -1 O PHE A 143 N GLY A 60 SHEET 6 B 6 GLY A 406 LEU A 409 -1 O LEU A 409 N VAL A 149 SHEET 1 C 3 SER A 67 PRO A 75 0 SHEET 2 C 3 ASN A 117 ALA A 125 -1 O LEU A 124 N ARG A 68 SHEET 3 C 3 SER A 100 PRO A 101 -1 N SER A 100 O SER A 121 SHEET 1 D 6 ILE A 255 TRP A 263 0 SHEET 2 D 6 ARG A 274 GLN A 284 -1 O LEU A 278 N VAL A 258 SHEET 3 D 6 GLY A 287 ASP A 293 -1 O VAL A 289 N ASP A 281 SHEET 4 D 6 PRO A 211 ASP A 219 -1 N LEU A 214 O LEU A 292 SHEET 5 D 6 GLN A 354 VAL A 360 -1 O LYS A 359 N THR A 212 SHEET 6 D 6 LYS A 364 HIS A 367 -1 O ILE A 366 N ILE A 358 SHEET 1 E 2 HIS A 415 ALA A 416 0 SHEET 2 E 2 THR A 452 ILE A 453 -1 O ILE A 453 N HIS A 415 LINK C TYR A 82 N MSE A 83 1555 1555 1.33 LINK C MSE A 83 N LYS A 84 1555 1555 1.34 LINK C VAL A 150 N MSE A 151 1555 1555 1.33 LINK C MSE A 151 N PHE A 152 1555 1555 1.34 LINK C GLN A 186 N MSE A 187 1555 1555 1.35 LINK C MSE A 187 N MSE A 188 1555 1555 1.34 LINK C MSE A 188 N GLU A 189 1555 1555 1.35 LINK C THR A 241 N MSE A 242 1555 1555 1.34 LINK C MSE A 242 N THR A 243 1555 1555 1.36 LINK C LEU A 298 N MSE A 299 1555 1555 1.34 LINK C MSE A 299 N ASP A 300 1555 1555 1.35 LINK C ASP A 304 N MSE A 305 1555 1555 1.34 LINK C MSE A 305 N PHE A 306 1555 1555 1.35 LINK C PRO A 318 N MSE A 319 1555 1555 1.33 LINK C MSE A 319 N LEU A 320 1555 1555 1.35 LINK C HIS A 367 N MSE A 368 1555 1555 1.34 LINK C MSE A 368 N ARG A 369 1555 1555 1.35 LINK OD1 ASN A 135 CA CA A 460 1555 1555 2.16 LINK OD1 ASP A 138 CA CA A 460 1555 1555 2.46 LINK OD2 ASP A 138 CA CA A 460 1555 1555 2.65 LINK OE2 GLU A 153 CA CA A 458 1555 1555 2.20 LINK OE1 GLU A 153 CA CA A 458 1555 1555 2.48 LINK OD2 ASP A 167 CA CA A 457 1555 1555 2.42 LINK OD1 ASP A 167 CA CA A 457 1555 1555 2.71 LINK OD1 ASP A 167 CA CA A 458 1555 1555 2.53 LINK OD1 ASN A 169 CA CA A 457 1555 1555 2.39 LINK OD1 ASP A 170 CA CA A 457 1555 1555 2.48 LINK OD2 ASP A 170 CA CA A 458 1555 1555 2.52 LINK OD1 ASP A 170 CA CA A 458 1555 1555 2.64 LINK OE1 GLN A 185 CA CA A 460 1555 1555 2.39 LINK O GLY A 207 CA CA A 457 1555 1555 2.36 LINK OE1 GLU A 418 CA CA A 457 1555 1555 2.41 LINK OE2 GLU A 418 CA CA A 457 1555 1555 2.52 LINK OD1 ASP A 449 CA CA A 459 1555 1555 2.42 LINK OD2 ASP A 449 CA CA A 459 1555 1555 2.44 LINK CA CA A 457 O HOH A 508 1555 1555 2.67 LINK CA CA A 458 O HOH A 477 1555 1555 2.42 LINK CA CA A 458 O HOH A 494 1555 1555 2.38 LINK CA CA A 458 O HOH A 508 1555 1555 2.36 LINK CA CA A 459 OXT ACT A 461 1555 1555 2.35 LINK CA CA A 459 O HOH A 616 1555 1555 2.26 LINK CA CA A 460 O HOH A 472 1555 1555 2.18 LINK CA CA A 460 O HOH A 677 1555 1555 2.65 CISPEP 1 TRP A 156 PRO A 157 0 7.63 SITE 1 AC1 7 ASP A 167 ASN A 169 ASP A 170 GLY A 207 SITE 2 AC1 7 GLU A 418 CA A 458 HOH A 508 SITE 1 AC2 7 GLU A 153 ASP A 167 ASP A 170 CA A 457 SITE 2 AC2 7 HOH A 477 HOH A 494 HOH A 508 SITE 1 AC3 4 ASP A 449 THR A 452 ACT A 461 HOH A 616 SITE 1 AC4 5 ASN A 135 ASP A 138 GLN A 185 HOH A 472 SITE 2 AC4 5 HOH A 677 SITE 1 AC5 6 GLN A 310 TYR A 417 ASP A 449 GLU A 450 SITE 2 AC5 6 THR A 452 CA A 459 SITE 1 AC6 6 VAL A 213 THR A 291 LYS A 359 GLU A 365 SITE 2 AC6 6 THR A 374 HOH A 743 SITE 1 AC7 6 PHE A 112 GLY A 402 VAL A 433 ASP A 434 SITE 2 AC7 6 LYS A 436 HOH A 669 CRYST1 88.640 118.580 49.330 90.00 110.41 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011282 0.000000 0.004198 0.00000 SCALE2 0.000000 0.008433 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021630 0.00000