data_3OR5 # _entry.id 3OR5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3OR5 RCSB RCSB061469 WWPDB D_1000061469 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGXRC-11210i _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3OR5 _pdbx_database_status.recvd_initial_deposition_date 2010-09-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bagaria, A.' 1 ? 'Burley, S.K.' 2 0000-0002-2487-9713 'Swaminathan, S.' 3 ? 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 4 ? # _citation.id primary _citation.title 'Crystal structure of thiol:disulfide interchange protein, thioredoxin family protein from Chlorobium tepidum TLS' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bagaria, A.' 1 ? primary 'Burley, S.K.' 2 0000-0002-2487-9713 primary 'Swaminathan, S.' 3 ? # _cell.entry_id 3OR5 _cell.length_a 50.070 _cell.length_b 50.070 _cell.length_c 116.665 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3OR5 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Thiol:disulfide interchange protein, thioredoxin family protein' 18037.754 1 ? ? 'sequence database residues 25-178' ? 2 water nat water 18.015 123 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)SLSAQADARPTPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPD(MSE)VQVQKTWASRGFTFVG IAVNEQLPNVKNY(MSE)KTQGIIYPV(MSE)(MSE)ATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKA DFDRIVK(MSE)ALGAKAATKEGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLSAQADARPTPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLP NVKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGAKAATKEGH HHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGXRC-11210i # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 LEU n 1 4 SER n 1 5 ALA n 1 6 GLN n 1 7 ALA n 1 8 ASP n 1 9 ALA n 1 10 ARG n 1 11 PRO n 1 12 THR n 1 13 PRO n 1 14 ALA n 1 15 PRO n 1 16 SER n 1 17 PHE n 1 18 SER n 1 19 GLY n 1 20 VAL n 1 21 THR n 1 22 VAL n 1 23 ASP n 1 24 GLY n 1 25 LYS n 1 26 PRO n 1 27 PHE n 1 28 SER n 1 29 SER n 1 30 ALA n 1 31 SER n 1 32 LEU n 1 33 LYS n 1 34 GLY n 1 35 LYS n 1 36 ALA n 1 37 TYR n 1 38 ILE n 1 39 VAL n 1 40 ASN n 1 41 PHE n 1 42 PHE n 1 43 ALA n 1 44 THR n 1 45 TRP n 1 46 CYS n 1 47 PRO n 1 48 PRO n 1 49 CYS n 1 50 ARG n 1 51 SER n 1 52 GLU n 1 53 ILE n 1 54 PRO n 1 55 ASP n 1 56 MSE n 1 57 VAL n 1 58 GLN n 1 59 VAL n 1 60 GLN n 1 61 LYS n 1 62 THR n 1 63 TRP n 1 64 ALA n 1 65 SER n 1 66 ARG n 1 67 GLY n 1 68 PHE n 1 69 THR n 1 70 PHE n 1 71 VAL n 1 72 GLY n 1 73 ILE n 1 74 ALA n 1 75 VAL n 1 76 ASN n 1 77 GLU n 1 78 GLN n 1 79 LEU n 1 80 PRO n 1 81 ASN n 1 82 VAL n 1 83 LYS n 1 84 ASN n 1 85 TYR n 1 86 MSE n 1 87 LYS n 1 88 THR n 1 89 GLN n 1 90 GLY n 1 91 ILE n 1 92 ILE n 1 93 TYR n 1 94 PRO n 1 95 VAL n 1 96 MSE n 1 97 MSE n 1 98 ALA n 1 99 THR n 1 100 PRO n 1 101 GLU n 1 102 LEU n 1 103 ILE n 1 104 ARG n 1 105 ALA n 1 106 PHE n 1 107 ASN n 1 108 GLY n 1 109 TYR n 1 110 ILE n 1 111 ASP n 1 112 GLY n 1 113 GLY n 1 114 ILE n 1 115 THR n 1 116 GLY n 1 117 ILE n 1 118 PRO n 1 119 THR n 1 120 SER n 1 121 PHE n 1 122 VAL n 1 123 ILE n 1 124 ASP n 1 125 ALA n 1 126 SER n 1 127 GLY n 1 128 ASN n 1 129 VAL n 1 130 SER n 1 131 GLY n 1 132 VAL n 1 133 ILE n 1 134 VAL n 1 135 GLY n 1 136 PRO n 1 137 ARG n 1 138 SER n 1 139 LYS n 1 140 ALA n 1 141 ASP n 1 142 PHE n 1 143 ASP n 1 144 ARG n 1 145 ILE n 1 146 VAL n 1 147 LYS n 1 148 MSE n 1 149 ALA n 1 150 LEU n 1 151 GLY n 1 152 ALA n 1 153 LYS n 1 154 ALA n 1 155 ALA n 1 156 THR n 1 157 LYS n 1 158 GLU n 1 159 GLY n 1 160 HIS n 1 161 HIS n 1 162 HIS n 1 163 HIS n 1 164 HIS n 1 165 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CT2233 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain TLS _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Chlorobaculum tepidum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1097 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pSGX3(BC)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8KAD0_CHLTE _struct_ref.pdbx_db_accession Q8KAD0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SAQADARPTPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVK NYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGAKAATK ; _struct_ref.pdbx_align_begin 25 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3OR5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 157 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8KAD0 _struct_ref_seq.db_align_beg 25 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 178 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 25 _struct_ref_seq.pdbx_auth_seq_align_end 178 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3OR5 MSE A 1 ? UNP Q8KAD0 ? ? 'expression tag' 22 1 1 3OR5 SER A 2 ? UNP Q8KAD0 ? ? 'expression tag' 23 2 1 3OR5 LEU A 3 ? UNP Q8KAD0 ? ? 'expression tag' 24 3 1 3OR5 GLU A 158 ? UNP Q8KAD0 ? ? 'expression tag' 179 4 1 3OR5 GLY A 159 ? UNP Q8KAD0 ? ? 'expression tag' 180 5 1 3OR5 HIS A 160 ? UNP Q8KAD0 ? ? 'expression tag' 181 6 1 3OR5 HIS A 161 ? UNP Q8KAD0 ? ? 'expression tag' 182 7 1 3OR5 HIS A 162 ? UNP Q8KAD0 ? ? 'expression tag' 183 8 1 3OR5 HIS A 163 ? UNP Q8KAD0 ? ? 'expression tag' 184 9 1 3OR5 HIS A 164 ? UNP Q8KAD0 ? ? 'expression tag' 185 10 1 3OR5 HIS A 165 ? UNP Q8KAD0 ? ? 'expression tag' 186 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3OR5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.03 _exptl_crystal.density_percent_sol 39.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '0.1 M BIS-TRIS pH 6.5, 3.0 M Sodium chloride, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-08-19 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)channel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979 # _reflns.entry_id 3OR5 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 38 _reflns.d_resolution_high 1.6 _reflns.number_obs 18223 _reflns.number_all 18281 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.116 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.7 _reflns.B_iso_Wilson_estimate 26.2 _reflns.pdbx_redundancy 27.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.66 _reflns_shell.d_res_low 1.7 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs 0.48 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_redundancy 28.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1254 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3OR5 _refine.ls_number_reflns_obs 17292 _refine.ls_number_reflns_all 18281 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.99 _refine.ls_d_res_high 1.66 _refine.ls_percent_reflns_obs 99.82 _refine.ls_R_factor_obs 0.17541 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17410 _refine.ls_R_factor_R_free 0.19876 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 931 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.B_iso_mean 19.382 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.089 _refine.overall_SU_ML 0.054 _refine.overall_SU_B 1.530 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.092 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1092 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 123 _refine_hist.number_atoms_total 1215 _refine_hist.d_res_high 1.66 _refine_hist.d_res_low 37.99 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.026 0.022 ? 1120 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.233 1.958 ? 1523 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.191 5.000 ? 144 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.400 23.415 ? 41 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.932 15.000 ? 175 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.983 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.160 0.200 ? 170 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.014 0.022 ? 849 'X-RAY DIFFRACTION' ? r_mcbond_it 1.452 1.500 ? 722 'X-RAY DIFFRACTION' ? r_mcangle_it 2.537 2.000 ? 1173 'X-RAY DIFFRACTION' ? r_scbond_it 4.274 3.000 ? 398 'X-RAY DIFFRACTION' ? r_scangle_it 6.424 4.500 ? 350 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.662 _refine_ls_shell.d_res_low 1.705 _refine_ls_shell.number_reflns_R_work 1254 _refine_ls_shell.R_factor_R_work 0.180 _refine_ls_shell.percent_reflns_obs 99.39 _refine_ls_shell.R_factor_R_free 0.248 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 56 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3OR5 _struct.title 'Crystal structure of thiol:disulfide interchange protein, thioredoxin family protein from Chlorobium tepidum TLS' _struct.pdbx_descriptor 'Thiol:disulfide interchange protein, thioredoxin family protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3OR5 _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text ;PSI-II, Structural Genomics, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, OXIDOREDUCTASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 30 ? LYS A 33 ? ALA A 51 LYS A 54 5 ? 4 HELX_P HELX_P2 2 CYS A 46 ? ALA A 64 ? CYS A 67 ALA A 85 1 ? 19 HELX_P HELX_P3 3 GLN A 78 ? GLY A 90 ? GLN A 99 GLY A 111 1 ? 13 HELX_P HELX_P4 4 THR A 99 ? GLY A 108 ? THR A 120 GLY A 129 1 ? 10 HELX_P HELX_P5 5 SER A 138 ? GLY A 151 ? SER A 159 GLY A 172 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASP 55 C ? ? ? 1_555 A MSE 56 N ? ? A ASP 76 A MSE 77 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale2 covale both ? A MSE 56 C ? ? ? 1_555 A VAL 57 N ? ? A MSE 77 A VAL 78 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? A TYR 85 C ? ? ? 1_555 A MSE 86 N ? ? A TYR 106 A MSE 107 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale4 covale both ? A MSE 86 C ? ? ? 1_555 A LYS 87 N ? ? A MSE 107 A LYS 108 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? A VAL 95 C ? ? ? 1_555 A MSE 96 N ? ? A VAL 116 A MSE 117 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale6 covale both ? A MSE 96 C ? ? ? 1_555 A MSE 97 N ? ? A MSE 117 A MSE 118 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale7 covale both ? A MSE 97 C ? ? ? 1_555 A ALA 98 N ? ? A MSE 118 A ALA 119 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale8 covale both ? A LYS 147 C ? ? ? 1_555 A MSE 148 N ? ? A LYS 168 A MSE 169 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale9 covale both ? A MSE 148 C ? ? ? 1_555 A ALA 149 N ? ? A MSE 169 A ALA 170 1_555 ? ? ? ? ? ? ? 1.328 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ILE _struct_mon_prot_cis.label_seq_id 117 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ILE _struct_mon_prot_cis.auth_seq_id 138 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 118 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 139 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.06 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 18 ? VAL A 20 ? SER A 39 VAL A 41 A 2 PRO A 26 ? SER A 28 ? PRO A 47 SER A 49 B 1 VAL A 95 ? MSE A 97 ? VAL A 116 MSE A 118 B 2 PHE A 68 ? ALA A 74 ? PHE A 89 ALA A 95 B 3 ALA A 36 ? PHE A 42 ? ALA A 57 PHE A 63 B 4 THR A 119 ? ILE A 123 ? THR A 140 ILE A 144 B 5 VAL A 129 ? ILE A 133 ? VAL A 150 ILE A 154 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 19 ? N GLY A 40 O PHE A 27 ? O PHE A 48 B 1 2 O MSE A 96 ? O MSE A 117 N ALA A 74 ? N ALA A 95 B 2 3 O VAL A 71 ? O VAL A 92 N ASN A 40 ? N ASN A 61 B 3 4 N TYR A 37 ? N TYR A 58 O ILE A 123 ? O ILE A 144 B 4 5 N VAL A 122 ? N VAL A 143 O GLY A 131 ? O GLY A 152 # _database_PDB_matrix.entry_id 3OR5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3OR5 _atom_sites.fract_transf_matrix[1][1] 0.019972 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019972 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008572 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 22 ? ? ? A . n A 1 2 SER 2 23 ? ? ? A . n A 1 3 LEU 3 24 ? ? ? A . n A 1 4 SER 4 25 ? ? ? A . n A 1 5 ALA 5 26 ? ? ? A . n A 1 6 GLN 6 27 ? ? ? A . n A 1 7 ALA 7 28 28 ALA ALA A . n A 1 8 ASP 8 29 29 ASP ASP A . n A 1 9 ALA 9 30 30 ALA ALA A . n A 1 10 ARG 10 31 31 ARG ARG A . n A 1 11 PRO 11 32 32 PRO PRO A . n A 1 12 THR 12 33 33 THR THR A . n A 1 13 PRO 13 34 34 PRO PRO A . n A 1 14 ALA 14 35 35 ALA ALA A . n A 1 15 PRO 15 36 36 PRO PRO A . n A 1 16 SER 16 37 37 SER SER A . n A 1 17 PHE 17 38 38 PHE PHE A . n A 1 18 SER 18 39 39 SER SER A . n A 1 19 GLY 19 40 40 GLY GLY A . n A 1 20 VAL 20 41 41 VAL VAL A . n A 1 21 THR 21 42 42 THR THR A . n A 1 22 VAL 22 43 43 VAL VAL A . n A 1 23 ASP 23 44 44 ASP ASP A . n A 1 24 GLY 24 45 45 GLY GLY A . n A 1 25 LYS 25 46 46 LYS LYS A . n A 1 26 PRO 26 47 47 PRO PRO A . n A 1 27 PHE 27 48 48 PHE PHE A . n A 1 28 SER 28 49 49 SER SER A . n A 1 29 SER 29 50 50 SER SER A . n A 1 30 ALA 30 51 51 ALA ALA A . n A 1 31 SER 31 52 52 SER SER A . n A 1 32 LEU 32 53 53 LEU LEU A . n A 1 33 LYS 33 54 54 LYS LYS A . n A 1 34 GLY 34 55 55 GLY GLY A . n A 1 35 LYS 35 56 56 LYS LYS A . n A 1 36 ALA 36 57 57 ALA ALA A . n A 1 37 TYR 37 58 58 TYR TYR A . n A 1 38 ILE 38 59 59 ILE ILE A . n A 1 39 VAL 39 60 60 VAL VAL A . n A 1 40 ASN 40 61 61 ASN ASN A . n A 1 41 PHE 41 62 62 PHE PHE A . n A 1 42 PHE 42 63 63 PHE PHE A . n A 1 43 ALA 43 64 64 ALA ALA A . n A 1 44 THR 44 65 65 THR THR A . n A 1 45 TRP 45 66 66 TRP TRP A . n A 1 46 CYS 46 67 67 CYS CYS A . n A 1 47 PRO 47 68 68 PRO PRO A . n A 1 48 PRO 48 69 69 PRO PRO A . n A 1 49 CYS 49 70 70 CYS CYS A . n A 1 50 ARG 50 71 71 ARG ARG A . n A 1 51 SER 51 72 72 SER SER A . n A 1 52 GLU 52 73 73 GLU GLU A . n A 1 53 ILE 53 74 74 ILE ILE A . n A 1 54 PRO 54 75 75 PRO PRO A . n A 1 55 ASP 55 76 76 ASP ASP A . n A 1 56 MSE 56 77 77 MSE MSE A . n A 1 57 VAL 57 78 78 VAL VAL A . n A 1 58 GLN 58 79 79 GLN GLN A . n A 1 59 VAL 59 80 80 VAL VAL A . n A 1 60 GLN 60 81 81 GLN GLN A . n A 1 61 LYS 61 82 82 LYS LYS A . n A 1 62 THR 62 83 83 THR THR A . n A 1 63 TRP 63 84 84 TRP TRP A . n A 1 64 ALA 64 85 85 ALA ALA A . n A 1 65 SER 65 86 86 SER SER A . n A 1 66 ARG 66 87 87 ARG ARG A . n A 1 67 GLY 67 88 88 GLY GLY A . n A 1 68 PHE 68 89 89 PHE PHE A . n A 1 69 THR 69 90 90 THR THR A . n A 1 70 PHE 70 91 91 PHE PHE A . n A 1 71 VAL 71 92 92 VAL VAL A . n A 1 72 GLY 72 93 93 GLY GLY A . n A 1 73 ILE 73 94 94 ILE ILE A . n A 1 74 ALA 74 95 95 ALA ALA A . n A 1 75 VAL 75 96 96 VAL VAL A . n A 1 76 ASN 76 97 97 ASN ASN A . n A 1 77 GLU 77 98 98 GLU GLU A . n A 1 78 GLN 78 99 99 GLN GLN A . n A 1 79 LEU 79 100 100 LEU LEU A . n A 1 80 PRO 80 101 101 PRO PRO A . n A 1 81 ASN 81 102 102 ASN ASN A . n A 1 82 VAL 82 103 103 VAL VAL A . n A 1 83 LYS 83 104 104 LYS LYS A . n A 1 84 ASN 84 105 105 ASN ASN A . n A 1 85 TYR 85 106 106 TYR TYR A . n A 1 86 MSE 86 107 107 MSE MSE A . n A 1 87 LYS 87 108 108 LYS LYS A . n A 1 88 THR 88 109 109 THR THR A . n A 1 89 GLN 89 110 110 GLN GLN A . n A 1 90 GLY 90 111 111 GLY GLY A . n A 1 91 ILE 91 112 112 ILE ILE A . n A 1 92 ILE 92 113 113 ILE ILE A . n A 1 93 TYR 93 114 114 TYR TYR A . n A 1 94 PRO 94 115 115 PRO PRO A . n A 1 95 VAL 95 116 116 VAL VAL A . n A 1 96 MSE 96 117 117 MSE MSE A . n A 1 97 MSE 97 118 118 MSE MSE A . n A 1 98 ALA 98 119 119 ALA ALA A . n A 1 99 THR 99 120 120 THR THR A . n A 1 100 PRO 100 121 121 PRO PRO A . n A 1 101 GLU 101 122 122 GLU GLU A . n A 1 102 LEU 102 123 123 LEU LEU A . n A 1 103 ILE 103 124 124 ILE ILE A . n A 1 104 ARG 104 125 125 ARG ARG A . n A 1 105 ALA 105 126 126 ALA ALA A . n A 1 106 PHE 106 127 127 PHE PHE A . n A 1 107 ASN 107 128 128 ASN ASN A . n A 1 108 GLY 108 129 129 GLY GLY A . n A 1 109 TYR 109 130 130 TYR TYR A . n A 1 110 ILE 110 131 131 ILE ILE A . n A 1 111 ASP 111 132 132 ASP ASP A . n A 1 112 GLY 112 133 133 GLY GLY A . n A 1 113 GLY 113 134 134 GLY GLY A . n A 1 114 ILE 114 135 135 ILE ILE A . n A 1 115 THR 115 136 136 THR THR A . n A 1 116 GLY 116 137 137 GLY GLY A . n A 1 117 ILE 117 138 138 ILE ILE A . n A 1 118 PRO 118 139 139 PRO PRO A . n A 1 119 THR 119 140 140 THR THR A . n A 1 120 SER 120 141 141 SER SER A . n A 1 121 PHE 121 142 142 PHE PHE A . n A 1 122 VAL 122 143 143 VAL VAL A . n A 1 123 ILE 123 144 144 ILE ILE A . n A 1 124 ASP 124 145 145 ASP ASP A . n A 1 125 ALA 125 146 146 ALA ALA A . n A 1 126 SER 126 147 147 SER SER A . n A 1 127 GLY 127 148 148 GLY GLY A . n A 1 128 ASN 128 149 149 ASN ASN A . n A 1 129 VAL 129 150 150 VAL VAL A . n A 1 130 SER 130 151 151 SER SER A . n A 1 131 GLY 131 152 152 GLY GLY A . n A 1 132 VAL 132 153 153 VAL VAL A . n A 1 133 ILE 133 154 154 ILE ILE A . n A 1 134 VAL 134 155 155 VAL VAL A . n A 1 135 GLY 135 156 156 GLY GLY A . n A 1 136 PRO 136 157 157 PRO PRO A . n A 1 137 ARG 137 158 158 ARG ARG A . n A 1 138 SER 138 159 159 SER SER A . n A 1 139 LYS 139 160 160 LYS LYS A . n A 1 140 ALA 140 161 161 ALA ALA A . n A 1 141 ASP 141 162 162 ASP ASP A . n A 1 142 PHE 142 163 163 PHE PHE A . n A 1 143 ASP 143 164 164 ASP ASP A . n A 1 144 ARG 144 165 165 ARG ARG A . n A 1 145 ILE 145 166 166 ILE ILE A . n A 1 146 VAL 146 167 167 VAL VAL A . n A 1 147 LYS 147 168 168 LYS LYS A . n A 1 148 MSE 148 169 169 MSE MSE A . n A 1 149 ALA 149 170 170 ALA ALA A . n A 1 150 LEU 150 171 171 LEU LEU A . n A 1 151 GLY 151 172 172 GLY GLY A . n A 1 152 ALA 152 173 ? ? ? A . n A 1 153 LYS 153 174 ? ? ? A . n A 1 154 ALA 154 175 ? ? ? A . n A 1 155 ALA 155 176 ? ? ? A . n A 1 156 THR 156 177 ? ? ? A . n A 1 157 LYS 157 178 ? ? ? A . n A 1 158 GLU 158 179 ? ? ? A . n A 1 159 GLY 159 180 ? ? ? A . n A 1 160 HIS 160 181 ? ? ? A . n A 1 161 HIS 161 182 ? ? ? A . n A 1 162 HIS 162 183 ? ? ? A . n A 1 163 HIS 163 184 ? ? ? A . n A 1 164 HIS 164 185 ? ? ? A . n A 1 165 HIS 165 186 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1 1 HOH HOH A . B 2 HOH 2 2 2 HOH HOH A . B 2 HOH 3 3 3 HOH HOH A . B 2 HOH 4 4 4 HOH HOH A . B 2 HOH 5 5 5 HOH HOH A . B 2 HOH 6 6 6 HOH HOH A . B 2 HOH 7 7 7 HOH HOH A . B 2 HOH 8 8 8 HOH HOH A . B 2 HOH 9 9 9 HOH HOH A . B 2 HOH 10 10 10 HOH HOH A . B 2 HOH 11 11 11 HOH HOH A . B 2 HOH 12 12 12 HOH HOH A . B 2 HOH 13 13 13 HOH HOH A . B 2 HOH 14 14 14 HOH HOH A . B 2 HOH 15 15 15 HOH HOH A . B 2 HOH 16 16 16 HOH HOH A . B 2 HOH 17 17 17 HOH HOH A . B 2 HOH 18 18 18 HOH HOH A . B 2 HOH 19 19 19 HOH HOH A . B 2 HOH 20 20 20 HOH HOH A . B 2 HOH 21 21 21 HOH HOH A . B 2 HOH 22 187 22 HOH HOH A . B 2 HOH 23 188 23 HOH HOH A . B 2 HOH 24 189 24 HOH HOH A . B 2 HOH 25 190 25 HOH HOH A . B 2 HOH 26 191 26 HOH HOH A . B 2 HOH 27 192 27 HOH HOH A . B 2 HOH 28 193 28 HOH HOH A . B 2 HOH 29 194 29 HOH HOH A . B 2 HOH 30 195 30 HOH HOH A . B 2 HOH 31 196 31 HOH HOH A . B 2 HOH 32 197 32 HOH HOH A . B 2 HOH 33 198 33 HOH HOH A . B 2 HOH 34 199 34 HOH HOH A . B 2 HOH 35 200 35 HOH HOH A . B 2 HOH 36 201 36 HOH HOH A . B 2 HOH 37 202 37 HOH HOH A . B 2 HOH 38 203 38 HOH HOH A . B 2 HOH 39 204 39 HOH HOH A . B 2 HOH 40 205 40 HOH HOH A . B 2 HOH 41 206 41 HOH HOH A . B 2 HOH 42 207 42 HOH HOH A . B 2 HOH 43 208 43 HOH HOH A . B 2 HOH 44 209 44 HOH HOH A . B 2 HOH 45 210 45 HOH HOH A . B 2 HOH 46 211 46 HOH HOH A . B 2 HOH 47 212 47 HOH HOH A . B 2 HOH 48 213 48 HOH HOH A . B 2 HOH 49 214 49 HOH HOH A . B 2 HOH 50 215 50 HOH HOH A . B 2 HOH 51 216 51 HOH HOH A . B 2 HOH 52 217 52 HOH HOH A . B 2 HOH 53 218 53 HOH HOH A . B 2 HOH 54 219 54 HOH HOH A . B 2 HOH 55 220 55 HOH HOH A . B 2 HOH 56 221 56 HOH HOH A . B 2 HOH 57 222 57 HOH HOH A . B 2 HOH 58 223 58 HOH HOH A . B 2 HOH 59 224 59 HOH HOH A . B 2 HOH 60 225 60 HOH HOH A . B 2 HOH 61 226 63 HOH HOH A . B 2 HOH 62 227 64 HOH HOH A . B 2 HOH 63 228 65 HOH HOH A . B 2 HOH 64 229 66 HOH HOH A . B 2 HOH 65 230 67 HOH HOH A . B 2 HOH 66 231 68 HOH HOH A . B 2 HOH 67 232 69 HOH HOH A . B 2 HOH 68 233 70 HOH HOH A . B 2 HOH 69 234 71 HOH HOH A . B 2 HOH 70 235 72 HOH HOH A . B 2 HOH 71 236 73 HOH HOH A . B 2 HOH 72 237 74 HOH HOH A . B 2 HOH 73 238 75 HOH HOH A . B 2 HOH 74 239 76 HOH HOH A . B 2 HOH 75 240 77 HOH HOH A . B 2 HOH 76 241 78 HOH HOH A . B 2 HOH 77 242 79 HOH HOH A . B 2 HOH 78 243 80 HOH HOH A . B 2 HOH 79 244 81 HOH HOH A . B 2 HOH 80 245 82 HOH HOH A . B 2 HOH 81 246 83 HOH HOH A . B 2 HOH 82 247 84 HOH HOH A . B 2 HOH 83 248 85 HOH HOH A . B 2 HOH 84 249 86 HOH HOH A . B 2 HOH 85 250 87 HOH HOH A . B 2 HOH 86 251 88 HOH HOH A . B 2 HOH 87 252 89 HOH HOH A . B 2 HOH 88 253 90 HOH HOH A . B 2 HOH 89 254 91 HOH HOH A . B 2 HOH 90 255 92 HOH HOH A . B 2 HOH 91 256 94 HOH HOH A . B 2 HOH 92 257 96 HOH HOH A . B 2 HOH 93 258 97 HOH HOH A . B 2 HOH 94 259 99 HOH HOH A . B 2 HOH 95 260 100 HOH HOH A . B 2 HOH 96 261 102 HOH HOH A . B 2 HOH 97 262 103 HOH HOH A . B 2 HOH 98 263 105 HOH HOH A . B 2 HOH 99 264 106 HOH HOH A . B 2 HOH 100 265 108 HOH HOH A . B 2 HOH 101 266 110 HOH HOH A . B 2 HOH 102 267 112 HOH HOH A . B 2 HOH 103 268 113 HOH HOH A . B 2 HOH 104 269 114 HOH HOH A . B 2 HOH 105 270 117 HOH HOH A . B 2 HOH 106 271 121 HOH HOH A . B 2 HOH 107 272 122 HOH HOH A . B 2 HOH 108 273 126 HOH HOH A . B 2 HOH 109 274 127 HOH HOH A . B 2 HOH 110 275 133 HOH HOH A . B 2 HOH 111 276 134 HOH HOH A . B 2 HOH 112 277 135 HOH HOH A . B 2 HOH 113 278 136 HOH HOH A . B 2 HOH 114 279 137 HOH HOH A . B 2 HOH 115 280 140 HOH HOH A . B 2 HOH 116 281 143 HOH HOH A . B 2 HOH 117 282 144 HOH HOH A . B 2 HOH 118 283 147 HOH HOH A . B 2 HOH 119 284 148 HOH HOH A . B 2 HOH 120 285 149 HOH HOH A . B 2 HOH 121 286 151 HOH HOH A . B 2 HOH 122 287 154 HOH HOH A . B 2 HOH 123 288 155 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 56 A MSE 77 ? MET SELENOMETHIONINE 2 A MSE 86 A MSE 107 ? MET SELENOMETHIONINE 3 A MSE 96 A MSE 117 ? MET SELENOMETHIONINE 4 A MSE 97 A MSE 118 ? MET SELENOMETHIONINE 5 A MSE 148 A MSE 169 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-02-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 3 'Structure model' citation_author 3 3 'Structure model' struct_conn 4 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.identifier_ORCID' 2 3 'Structure model' '_citation_author.identifier_ORCID' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 SHARP phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 145 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 145 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 145 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 111.92 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation -6.38 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 22 ? A MSE 1 2 1 Y 1 A SER 23 ? A SER 2 3 1 Y 1 A LEU 24 ? A LEU 3 4 1 Y 1 A SER 25 ? A SER 4 5 1 Y 1 A ALA 26 ? A ALA 5 6 1 Y 1 A GLN 27 ? A GLN 6 7 1 Y 1 A ALA 173 ? A ALA 152 8 1 Y 1 A LYS 174 ? A LYS 153 9 1 Y 1 A ALA 175 ? A ALA 154 10 1 Y 1 A ALA 176 ? A ALA 155 11 1 Y 1 A THR 177 ? A THR 156 12 1 Y 1 A LYS 178 ? A LYS 157 13 1 Y 1 A GLU 179 ? A GLU 158 14 1 Y 1 A GLY 180 ? A GLY 159 15 1 Y 1 A HIS 181 ? A HIS 160 16 1 Y 1 A HIS 182 ? A HIS 161 17 1 Y 1 A HIS 183 ? A HIS 162 18 1 Y 1 A HIS 184 ? A HIS 163 19 1 Y 1 A HIS 185 ? A HIS 164 20 1 Y 1 A HIS 186 ? A HIS 165 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #