HEADER HYDROLASE 07-SEP-10 3ORW TITLE CRYSTAL STRUCTURE OF THERMOPHILIC PHOSPHOTRIESTERASE FROM GEOBACILLUS TITLE 2 KAUSTOPHILUS HTA426 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOTRIESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: THERMOPHILIC PHOSPHOTRIESTERASE; COMPND 5 EC: 3.5.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 3 ORGANISM_TAXID: 235909; SOURCE 4 STRAIN: HTA426; SOURCE 5 GENE: GK1506; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PHOSPHOTRIESTERASE, THERMOPHILIC, GEOBACILLUS KAUSTOPHILUS HTA426, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.S.ZHENG,S.S.YU,Y.ZHANG,Z.Y.LOU,Y.FENG REVDAT 4 06-DEC-23 3ORW 1 REMARK REVDAT 3 01-NOV-23 3ORW 1 REMARK REVDAT 2 20-NOV-19 3ORW 1 LINK REVDAT 1 21-SEP-11 3ORW 0 JRNL AUTH B.S.ZHENG,S.S.YU,Y.ZHANG,Z.Y.LOU,Y.FENG JRNL TITL CRYSTAL STRUCTURE OF THERMOPHILIC PHOSPHOTRIESTERASE FROM JRNL TITL 2 GEOBACILLUS KAUSTOPHILUS HTA426 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 28376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1502 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2003 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5096 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.46000 REMARK 3 B22 (A**2) : 2.73000 REMARK 3 B33 (A**2) : -0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.281 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.199 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.353 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5214 ; 0.030 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7056 ; 2.359 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 646 ; 8.506 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 250 ;35.101 ;23.680 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 862 ;20.249 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;23.480 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 760 ; 0.165 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4028 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2433 ; 0.240 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3457 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 176 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.185 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.294 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3350 ; 1.386 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5162 ; 2.229 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2162 ; 3.755 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1894 ; 5.450 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ORW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061495. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29732 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3F4D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH7.6 12% W/V PEG 8000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.43850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 134 CG2 THR A 137 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 15 CG GLU A 15 CD 0.092 REMARK 500 GLU A 46 CG GLU A 46 CD 0.099 REMARK 500 GLU A 53 CG GLU A 53 CD 0.126 REMARK 500 PHE A 161 CE1 PHE A 161 CZ 0.138 REMARK 500 TYR A 222 CE2 TYR A 222 CD2 -0.127 REMARK 500 VAL A 224 CB VAL A 224 CG1 0.140 REMARK 500 GLU A 305 CG GLU A 305 CD 0.109 REMARK 500 GLU B 3 CG GLU B 3 CD 0.092 REMARK 500 LYS B 19 CD LYS B 19 CE 0.175 REMARK 500 GLU B 155 CG GLU B 155 CD 0.105 REMARK 500 PHE B 228 CE1 PHE B 228 CZ 0.120 REMARK 500 GLU B 310 CG GLU B 310 CD 0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 43 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP B 45 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 45 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG B 76 NE - CZ - NH1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP B 120 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 MET B 127 CG - SD - CE ANGL. DEV. = -11.7 DEGREES REMARK 500 CYS B 208 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG B 274 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 PRO B 279 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 PRO B 281 C - N - CA ANGL. DEV. = -12.6 DEGREES REMARK 500 LEU B 294 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 23 82.89 -174.86 REMARK 500 PRO A 31 118.40 -37.26 REMARK 500 PRO A 69 31.90 -95.94 REMARK 500 ASN A 77 78.23 -157.45 REMARK 500 ALA A 105 65.68 -105.30 REMARK 500 GLU A 132 -65.26 -108.77 REMARK 500 ALA A 135 -134.65 37.14 REMARK 500 MET A 184 4.93 80.53 REMARK 500 GLU A 280 -28.69 -37.29 REMARK 500 PRO A 281 -90.74 -46.39 REMARK 500 LYS A 287 -51.28 -22.48 REMARK 500 ILE A 317 -56.10 -127.07 REMARK 500 HIS B 23 97.96 -167.27 REMARK 500 ARG B 60 -17.81 -49.73 REMARK 500 PRO B 69 33.31 -96.73 REMARK 500 ALA B 105 70.20 -117.33 REMARK 500 GLU B 132 -53.59 -127.15 REMARK 500 ALA B 135 -132.87 48.56 REMARK 500 VAL B 237 24.85 21.39 REMARK 500 PRO B 279 172.05 -35.21 REMARK 500 TRP B 289 77.89 -62.40 REMARK 500 ASN B 304 -8.21 -54.88 REMARK 500 ILE B 317 -67.93 -134.14 REMARK 500 SER B 325 -70.32 -85.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN B 234 GLY B 235 148.91 REMARK 500 ALA B 239 PRO B 240 -149.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 327 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 23 NE2 REMARK 620 2 HIS A 25 NE2 102.3 REMARK 620 3 KCX A 145 OQ1 93.8 95.2 REMARK 620 4 ASP A 266 OD1 77.9 81.6 170.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 328 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 145 OQ2 REMARK 620 2 HIS A 178 ND1 106.3 REMARK 620 3 HIS A 206 NE2 113.9 87.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 327 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 23 NE2 REMARK 620 2 HIS B 25 NE2 99.2 REMARK 620 3 KCX B 145 OQ1 97.7 97.1 REMARK 620 4 ASP B 266 OD1 93.4 71.3 165.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 328 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX B 145 OQ2 REMARK 620 2 HIS B 178 ND1 103.6 REMARK 620 3 HIS B 206 NE2 101.1 94.8 REMARK 620 4 HOH B 329 O 107.3 124.5 122.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 328 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 328 DBREF 3ORW A 1 326 UNP Q5KZU5 Q5KZU5_GEOKA 1 326 DBREF 3ORW B 1 326 UNP Q5KZU5 Q5KZU5_GEOKA 1 326 SEQRES 1 A 326 MET ALA GLU MET VAL GLU THR VAL CYS GLY PRO VAL PRO SEQRES 2 A 326 VAL GLU GLN LEU GLY LYS THR LEU ILE HIS GLU HIS PHE SEQRES 3 A 326 LEU PHE GLY TYR PRO GLY PHE GLN GLY ASP VAL THR ARG SEQRES 4 A 326 GLY THR PHE ARG GLU ASP GLU SER LEU ARG VAL ALA VAL SEQRES 5 A 326 GLU ALA ALA GLU LYS MET LYS ARG HIS GLY ILE GLN THR SEQRES 6 A 326 VAL VAL ASP PRO THR PRO ASN ASP CYS GLY ARG ASN PRO SEQRES 7 A 326 ALA PHE LEU ARG ARG VAL ALA GLU GLU THR GLY LEU ASN SEQRES 8 A 326 ILE ILE CYS ALA THR GLY TYR TYR TYR GLU GLY GLU GLY SEQRES 9 A 326 ALA PRO PRO TYR PHE GLN PHE ARG ARG LEU LEU GLY THR SEQRES 10 A 326 ALA GLU ASP ASP ILE TYR ASP MET PHE MET ALA GLU LEU SEQRES 11 A 326 THR GLU GLY ILE ALA ASP THR GLY ILE LYS ALA GLY VAL SEQRES 12 A 326 ILE KCX LEU ALA SER SER LYS GLY ARG ILE THR GLU TYR SEQRES 13 A 326 GLU LYS MET PHE PHE ARG ALA ALA ALA ARG ALA GLN LYS SEQRES 14 A 326 GLU THR GLY ALA VAL ILE ILE THR HIS THR GLN GLU GLY SEQRES 15 A 326 THR MET GLY PRO GLU GLN ALA ALA TYR LEU LEU GLU HIS SEQRES 16 A 326 GLY ALA ASP PRO LYS LYS ILE VAL ILE GLY HIS MET CYS SEQRES 17 A 326 GLY ASN THR ASP PRO ASP TYR HIS ARG LYS THR LEU ALA SEQRES 18 A 326 TYR GLY VAL TYR ILE ALA PHE ASP ARG PHE GLY ILE GLN SEQRES 19 A 326 GLY MET VAL GLY ALA PRO THR ASP GLU GLU ARG VAL ARG SEQRES 20 A 326 THR LEU LEU ALA LEU LEU ARG ASP GLY TYR GLU LYS GLN SEQRES 21 A 326 ILE MET LEU SER HIS ASP THR VAL ASN VAL TRP LEU GLY SEQRES 22 A 326 ARG PRO PHE THR LEU PRO GLU PRO PHE ALA GLU MET MET SEQRES 23 A 326 LYS ASN TRP HIS VAL GLU HIS LEU PHE VAL ASN ILE ILE SEQRES 24 A 326 PRO ALA LEU LYS ASN GLU GLY ILE ARG ASP GLU VAL LEU SEQRES 25 A 326 GLU GLN MET PHE ILE GLY ASN PRO ALA ALA LEU PHE SER SEQRES 26 A 326 ALA SEQRES 1 B 326 MET ALA GLU MET VAL GLU THR VAL CYS GLY PRO VAL PRO SEQRES 2 B 326 VAL GLU GLN LEU GLY LYS THR LEU ILE HIS GLU HIS PHE SEQRES 3 B 326 LEU PHE GLY TYR PRO GLY PHE GLN GLY ASP VAL THR ARG SEQRES 4 B 326 GLY THR PHE ARG GLU ASP GLU SER LEU ARG VAL ALA VAL SEQRES 5 B 326 GLU ALA ALA GLU LYS MET LYS ARG HIS GLY ILE GLN THR SEQRES 6 B 326 VAL VAL ASP PRO THR PRO ASN ASP CYS GLY ARG ASN PRO SEQRES 7 B 326 ALA PHE LEU ARG ARG VAL ALA GLU GLU THR GLY LEU ASN SEQRES 8 B 326 ILE ILE CYS ALA THR GLY TYR TYR TYR GLU GLY GLU GLY SEQRES 9 B 326 ALA PRO PRO TYR PHE GLN PHE ARG ARG LEU LEU GLY THR SEQRES 10 B 326 ALA GLU ASP ASP ILE TYR ASP MET PHE MET ALA GLU LEU SEQRES 11 B 326 THR GLU GLY ILE ALA ASP THR GLY ILE LYS ALA GLY VAL SEQRES 12 B 326 ILE KCX LEU ALA SER SER LYS GLY ARG ILE THR GLU TYR SEQRES 13 B 326 GLU LYS MET PHE PHE ARG ALA ALA ALA ARG ALA GLN LYS SEQRES 14 B 326 GLU THR GLY ALA VAL ILE ILE THR HIS THR GLN GLU GLY SEQRES 15 B 326 THR MET GLY PRO GLU GLN ALA ALA TYR LEU LEU GLU HIS SEQRES 16 B 326 GLY ALA ASP PRO LYS LYS ILE VAL ILE GLY HIS MET CYS SEQRES 17 B 326 GLY ASN THR ASP PRO ASP TYR HIS ARG LYS THR LEU ALA SEQRES 18 B 326 TYR GLY VAL TYR ILE ALA PHE ASP ARG PHE GLY ILE GLN SEQRES 19 B 326 GLY MET VAL GLY ALA PRO THR ASP GLU GLU ARG VAL ARG SEQRES 20 B 326 THR LEU LEU ALA LEU LEU ARG ASP GLY TYR GLU LYS GLN SEQRES 21 B 326 ILE MET LEU SER HIS ASP THR VAL ASN VAL TRP LEU GLY SEQRES 22 B 326 ARG PRO PHE THR LEU PRO GLU PRO PHE ALA GLU MET MET SEQRES 23 B 326 LYS ASN TRP HIS VAL GLU HIS LEU PHE VAL ASN ILE ILE SEQRES 24 B 326 PRO ALA LEU LYS ASN GLU GLY ILE ARG ASP GLU VAL LEU SEQRES 25 B 326 GLU GLN MET PHE ILE GLY ASN PRO ALA ALA LEU PHE SER SEQRES 26 B 326 ALA MODRES 3ORW KCX A 145 LYS LYSINE NZ-CARBOXYLIC ACID MODRES 3ORW KCX B 145 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 145 12 HET KCX B 145 12 HET CO A 327 1 HET CO A 328 1 HET CO B 327 1 HET CO B 328 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM CO COBALT (II) ION FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 CO 4(CO 2+) FORMUL 7 HOH *(H2 O) HELIX 1 1 GLU A 15 LEU A 17 5 3 HELIX 2 2 GLY A 32 VAL A 37 5 6 HELIX 3 3 ARG A 43 ARG A 60 1 18 HELIX 4 4 PRO A 71 GLY A 75 5 5 HELIX 5 5 ASN A 77 GLY A 89 1 13 HELIX 6 6 PRO A 106 GLY A 116 1 11 HELIX 7 7 THR A 117 GLU A 132 1 16 HELIX 8 8 THR A 154 GLY A 172 1 19 HELIX 9 9 MET A 184 GLU A 194 1 11 HELIX 10 10 ASP A 198 LYS A 200 5 3 HELIX 11 11 HIS A 206 ASN A 210 5 5 HELIX 12 12 ASP A 212 ALA A 221 1 10 HELIX 13 13 GLY A 235 ALA A 239 5 5 HELIX 14 14 THR A 241 ASP A 255 1 15 HELIX 15 15 TYR A 257 LYS A 259 5 3 HELIX 16 16 PRO A 279 MET A 286 1 8 HELIX 17 17 GLU A 292 ASN A 297 1 6 HELIX 18 18 ASN A 297 ASN A 304 1 8 HELIX 19 19 ARG A 308 ILE A 317 1 10 HELIX 20 20 ILE A 317 SER A 325 1 9 HELIX 21 21 GLU B 15 LEU B 17 5 3 HELIX 22 22 GLY B 32 VAL B 37 5 6 HELIX 23 23 ARG B 43 ARG B 60 1 18 HELIX 24 24 PRO B 71 GLY B 75 5 5 HELIX 25 25 ASN B 77 GLY B 89 1 13 HELIX 26 26 PRO B 106 LEU B 115 1 10 HELIX 27 27 THR B 117 GLU B 132 1 16 HELIX 28 28 THR B 154 GLY B 172 1 19 HELIX 29 29 MET B 184 HIS B 195 1 12 HELIX 30 30 ASP B 198 LYS B 200 5 3 HELIX 31 31 HIS B 206 ASN B 210 5 5 HELIX 32 32 ASP B 212 ALA B 221 1 10 HELIX 33 33 THR B 241 ARG B 254 1 14 HELIX 34 34 ASP B 255 GLY B 256 5 2 HELIX 35 35 TYR B 257 LYS B 259 5 3 HELIX 36 36 PRO B 281 MET B 286 1 6 HELIX 37 37 GLU B 292 ASN B 297 1 6 HELIX 38 38 ASN B 297 ASN B 304 1 8 HELIX 39 39 ARG B 308 ILE B 317 1 10 HELIX 40 40 ILE B 317 PHE B 324 1 8 SHEET 1 A 2 MET A 4 THR A 7 0 SHEET 2 A 2 GLY A 10 PRO A 13 -1 O VAL A 12 N VAL A 5 SHEET 1 B 8 THR A 20 LEU A 21 0 SHEET 2 B 8 THR A 65 ASP A 68 1 O VAL A 67 N LEU A 21 SHEET 3 B 8 ASN A 91 THR A 96 1 O ILE A 93 N ASP A 68 SHEET 4 B 8 VAL A 143 ALA A 147 1 O KCX A 145 N THR A 96 SHEET 5 B 8 VAL A 174 HIS A 178 1 O VAL A 174 N ILE A 144 SHEET 6 B 8 ILE A 202 ILE A 204 1 O VAL A 203 N THR A 177 SHEET 7 B 8 TYR A 225 PHE A 228 1 O TYR A 225 N ILE A 202 SHEET 8 B 8 ILE A 261 LEU A 263 1 O MET A 262 N PHE A 228 SHEET 1 C 2 HIS A 25 PHE A 28 0 SHEET 2 C 2 VAL A 268 TRP A 271 1 O ASN A 269 N HIS A 25 SHEET 1 D 2 MET B 4 THR B 7 0 SHEET 2 D 2 GLY B 10 PRO B 13 -1 O VAL B 12 N VAL B 5 SHEET 1 E 3 LYS B 19 LEU B 21 0 SHEET 2 E 3 ILE B 63 VAL B 67 1 O THR B 65 N LEU B 21 SHEET 3 E 3 ASN B 91 ILE B 93 1 O ASN B 91 N GLN B 64 SHEET 1 F 2 HIS B 25 PHE B 28 0 SHEET 2 F 2 VAL B 268 TRP B 271 1 O ASN B 269 N HIS B 25 SHEET 1 G 6 ALA B 95 GLY B 97 0 SHEET 2 G 6 VAL B 143 ALA B 147 1 O KCX B 145 N THR B 96 SHEET 3 G 6 VAL B 174 HIS B 178 1 O ILE B 176 N ILE B 144 SHEET 4 G 6 ILE B 202 ILE B 204 1 O VAL B 203 N THR B 177 SHEET 5 G 6 TYR B 225 PHE B 228 1 O TYR B 225 N ILE B 204 SHEET 6 G 6 ILE B 261 LEU B 263 1 O MET B 262 N PHE B 228 LINK C ILE A 144 N KCX A 145 1555 1555 1.32 LINK C KCX A 145 N LEU A 146 1555 1555 1.34 LINK C ILE B 144 N KCX B 145 1555 1555 1.35 LINK C KCX B 145 N LEU B 146 1555 1555 1.34 LINK NE2 HIS A 23 CO CO A 327 1555 1555 2.10 LINK NE2 HIS A 25 CO CO A 327 1555 1555 2.18 LINK OQ1 KCX A 145 CO CO A 327 1555 1555 2.31 LINK OQ2 KCX A 145 CO CO A 328 1555 1555 2.06 LINK ND1 HIS A 178 CO CO A 328 1555 1555 2.23 LINK NE2 HIS A 206 CO CO A 328 1555 1555 2.23 LINK OD1 ASP A 266 CO CO A 327 1555 1555 2.30 LINK NE2 HIS B 23 CO CO B 327 1555 1555 2.37 LINK NE2 HIS B 25 CO CO B 327 1555 1555 2.21 LINK OQ1 KCX B 145 CO CO B 327 1555 1555 2.57 LINK OQ2 KCX B 145 CO CO B 328 1555 1555 2.07 LINK ND1 HIS B 178 CO CO B 328 1555 1555 2.25 LINK NE2 HIS B 206 CO CO B 328 1555 1555 2.16 LINK OD1 ASP B 266 CO CO B 327 1555 1555 2.63 LINK CO CO B 328 O HOH B 329 1555 1555 2.78 SITE 1 AC1 6 HIS B 23 HIS B 25 KCX B 145 ASP B 266 SITE 2 AC1 6 CO B 328 HOH B 329 SITE 1 AC2 5 HIS A 23 HIS A 25 KCX A 145 ASP A 266 SITE 2 AC2 5 CO A 328 SITE 1 AC3 6 KCX B 145 HIS B 178 HIS B 206 ARG B 230 SITE 2 AC3 6 CO B 327 HOH B 329 SITE 1 AC4 4 KCX A 145 HIS A 178 HIS A 206 CO A 327 CRYST1 51.321 88.877 89.384 90.00 98.58 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019485 0.000000 0.002941 0.00000 SCALE2 0.000000 0.011252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011314 0.00000