HEADER HYDROLASE 08-SEP-10 3OSD TITLE CRYSTAL STRUCTURE OF A PUTATIVE GLYCOSYL HYDROLASE (BT2157) FROM TITLE 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GLYCOSYL HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROBABLE SECRETED GLYCOSYL HYDROLASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 GENE: BT_2157; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 30-OCT-24 3OSD 1 REMARK REVDAT 4 01-FEB-23 3OSD 1 REMARK SEQADV LINK REVDAT 3 25-OCT-17 3OSD 1 REMARK REVDAT 2 20-JUL-11 3OSD 1 KEYWDS REVDAT 1 13-OCT-10 3OSD 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE GLYCOSYL HYDROLASE (BT2157) JRNL TITL 2 FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.80 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 35247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1769 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2429 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2084 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 395 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.36000 REMARK 3 B22 (A**2) : 0.36000 REMARK 3 B33 (A**2) : -0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.793 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2256 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1557 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3048 ; 1.408 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3811 ; 0.856 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 289 ; 7.000 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;38.294 ;26.083 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 385 ;12.065 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;16.415 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 306 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2570 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 440 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1344 ; 0.736 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 559 ; 0.207 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2161 ; 1.313 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 912 ; 2.123 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 873 ; 3.237 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): 37.6120 19.6060 -22.7550 REMARK 3 T TENSOR REMARK 3 T11: 0.0162 T22: 0.0147 REMARK 3 T33: 0.0739 T12: 0.0083 REMARK 3 T13: -0.0096 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 1.1627 L22: 1.6427 REMARK 3 L33: 1.2924 L12: 0.1871 REMARK 3 L13: 0.3002 L23: -0.1011 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: -0.0564 S13: 0.1014 REMARK 3 S21: -0.0466 S22: 0.0000 S23: 0.0737 REMARK 3 S31: 0.1227 S32: 0.0032 S33: 0.0195 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 5. POTASSIUM (K) ION AND 1,2-ETHANEDIOL (EDO) REMARK 3 MOLECULES FROM THE CRYSTALLIZATION AND CRYOPROTECTION SOLUTIONS REMARK 3 ARE MODELED RESPECTIVELY. REMARK 4 REMARK 4 3OSD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97918,0.97903 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35272 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.454 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.80200 REMARK 200 R SYM FOR SHELL (I) : 0.80200 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M K3CITRATE, 20.0% PEG-3350, NO REMARK 280 BUFFER PH 8.3, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.59100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.71000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.71000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.88650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.71000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.71000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.29550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.71000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.71000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 72.88650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.71000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.71000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.29550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 48.59100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT REMARK 300 SCATTERING SUGGESTS THAT A DIMER IS THE PREDOMINANT OLIGOMERIZATION REMARK 300 STATE IN SOLUTION. HOWEVER, NONE OF THE CRYSTAL PACKING INTERFACES REMARK 300 ARE PREDICTED TO BE STABLE DIMERIZATION INTERFACES SUGGESTING THAT REMARK 300 MONOMERS PACKED INTO THE LATTICE UNDER THE CRYSTALLIZATION REMARK 300 CONDITIONS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 180 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 70 -30.82 -135.65 REMARK 500 LYS A 119 -75.56 -117.81 REMARK 500 LYS A 119 -73.51 -118.81 REMARK 500 SER A 135 -152.69 -151.58 REMARK 500 ALA A 187 -4.46 75.23 REMARK 500 TRP A 251 73.74 -153.78 REMARK 500 ASN A 260 51.91 -111.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 300 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 72 O REMARK 620 2 TRP A 75 O 71.1 REMARK 620 3 HOH A 347 O 85.0 94.3 REMARK 620 4 HOH A 400 O 107.1 119.0 146.6 REMARK 620 5 HOH A 421 O 75.0 145.1 90.7 64.0 REMARK 620 6 HOH A 481 O 145.8 74.9 100.0 87.2 138.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 301 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 134 OD1 REMARK 620 2 SER A 135 O 80.3 REMARK 620 3 GLU A 164 OE2 172.4 106.9 REMARK 620 4 GLN A 166 OE1 95.8 78.8 88.0 REMARK 620 5 GLN A 273 OE1 93.3 76.8 86.3 152.1 REMARK 620 6 HOH A 529 O 102.5 174.6 70.5 96.2 107.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 312 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 417175 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 27-290) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3OSD A 27 290 UNP Q8A5T1 Q8A5T1_BACTN 27 290 SEQADV 3OSD GLY A 0 UNP Q8A5T1 EXPRESSION TAG SEQRES 1 A 265 GLY GLY SER ALA GLN GLU GLU GLN SER ALA ASN GLU VAL SEQRES 2 A 265 ALA VAL SER TYR SER LYS SER LEU LYS ALA ALA GLU MSE SEQRES 3 A 265 ASP SER LEU GLN LEU PRO VAL ASP ALA ASP GLY TYR ILE SEQRES 4 A 265 THR ILE PHE ASP GLY LYS THR PHE ASN GLY TRP ARG GLY SEQRES 5 A 265 TYR GLY LYS ASP ARG VAL PRO SER LYS TRP THR ILE GLU SEQRES 6 A 265 ASP GLY CYS ILE LYS PHE ASN GLY SER GLY GLY GLY GLU SEQRES 7 A 265 ALA GLN ASP GLY ASP GLY GLY ASP LEU ILE PHE ALA HIS SEQRES 8 A 265 LYS PHE LYS ASN PHE GLU LEU GLU MSE GLU TRP LYS VAL SEQRES 9 A 265 SER LYS GLY GLY ASN SER GLY ILE PHE TYR LEU ALA GLN SEQRES 10 A 265 GLU VAL THR SER LYS ASP LYS ASP GLY ASN ASP VAL LEU SEQRES 11 A 265 GLU PRO ILE TYR ILE SER ALA PRO GLU TYR GLN VAL LEU SEQRES 12 A 265 ASP ASN ASP ASN HIS PRO ASP ALA LYS LEU GLY LYS ASP SEQRES 13 A 265 ASN ASN ARG GLN SER ALA SER LEU TYR ASP MSE ILE PRO SEQRES 14 A 265 ALA VAL PRO GLN ASN ALA LYS PRO PHE GLY GLU TRP ASN SEQRES 15 A 265 LYS ALA LYS ILE MSE VAL TYR LYS GLY THR VAL VAL HIS SEQRES 16 A 265 GLY GLN ASN ASP GLU ASN VAL LEU GLU TYR HIS LEU TRP SEQRES 17 A 265 THR LYS GLN TRP THR ASP LEU LEU GLN ALA SER LYS PHE SEQRES 18 A 265 SER GLN ASP LYS TRP PRO LEU ALA PHE GLU LEU LEU ASN SEQRES 19 A 265 ASN CYS GLY GLY GLU ASN HIS GLU GLY PHE ILE GLY MSE SEQRES 20 A 265 GLN ASP HIS GLY ASP ASP VAL TRP PHE ARG ASN ILE ARG SEQRES 21 A 265 VAL LYS VAL LEU ASP MODRES 3OSD MSE A 51 MET SELENOMETHIONINE MODRES 3OSD MSE A 125 MET SELENOMETHIONINE MODRES 3OSD MSE A 192 MET SELENOMETHIONINE MODRES 3OSD MSE A 212 MET SELENOMETHIONINE MODRES 3OSD MSE A 272 MET SELENOMETHIONINE HET MSE A 51 8 HET MSE A 125 13 HET MSE A 192 8 HET MSE A 212 8 HET MSE A 272 8 HET K A 300 1 HET K A 301 1 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET EDO A 310 4 HET EDO A 311 4 HET EDO A 312 4 HETNAM MSE SELENOMETHIONINE HETNAM K POTASSIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 K 2(K 1+) FORMUL 4 EDO 11(C2 H6 O2) FORMUL 15 HOH *395(H2 O) HELIX 1 1 SER A 28 ASN A 36 1 9 HELIX 2 2 GLY A 101 GLN A 105 5 5 HELIX 3 3 PRO A 157 SER A 161 5 5 HELIX 4 4 HIS A 173 LEU A 178 5 6 HELIX 5 5 THR A 234 ALA A 243 1 10 HELIX 6 6 TRP A 251 ASN A 260 1 10 SHEET 1 A 2 GLU A 37 TYR A 42 0 SHEET 2 A 2 ASP A 52 PRO A 57 -1 O LEU A 54 N VAL A 40 SHEET 1 B 4 TYR A 63 THR A 65 0 SHEET 2 B 4 VAL A 279 VAL A 288 -1 O VAL A 286 N ILE A 64 SHEET 3 B 4 CYS A 93 PHE A 96 -1 N ILE A 94 O PHE A 281 SHEET 4 B 4 TRP A 87 GLU A 90 -1 N THR A 88 O LYS A 95 SHEET 1 C 6 TYR A 63 THR A 65 0 SHEET 2 C 6 VAL A 279 VAL A 288 -1 O VAL A 286 N ILE A 64 SHEET 3 C 6 PHE A 121 VAL A 129 -1 N GLU A 122 O LYS A 287 SHEET 4 C 6 ASN A 207 TYR A 214 -1 O ALA A 209 N MSE A 125 SHEET 5 C 6 THR A 217 GLN A 222 -1 O THR A 217 N TYR A 214 SHEET 6 C 6 GLU A 225 HIS A 231 -1 O TYR A 230 N VAL A 218 SHEET 1 D 5 TRP A 75 GLY A 77 0 SHEET 2 D 5 LEU A 112 PHE A 118 -1 O ILE A 113 N ARG A 76 SHEET 3 D 5 GLY A 268 MSE A 272 -1 O GLY A 268 N PHE A 118 SHEET 4 D 5 ASN A 134 ALA A 141 -1 N PHE A 138 O GLY A 271 SHEET 5 D 5 GLU A 164 LEU A 168 -1 O TYR A 165 N ILE A 137 SHEET 1 E 2 THR A 145 LYS A 147 0 SHEET 2 E 2 ASP A 153 LEU A 155 -1 O VAL A 154 N SER A 146 LINK C GLU A 50 N MSE A 51 1555 1555 1.33 LINK C MSE A 51 N ASP A 52 1555 1555 1.32 LINK C GLU A 124 N MSE A 125 1555 1555 1.34 LINK C MSE A 125 N GLU A 126 1555 1555 1.31 LINK C ASP A 191 N MSE A 192 1555 1555 1.33 LINK C MSE A 192 N ILE A 193 1555 1555 1.33 LINK C ILE A 211 N MSE A 212 1555 1555 1.33 LINK C MSE A 212 N VAL A 213 1555 1555 1.33 LINK C GLY A 271 N MSE A 272 1555 1555 1.34 LINK C MSE A 272 N GLN A 273 1555 1555 1.33 LINK O PHE A 72 K K A 300 1555 1555 2.87 LINK O TRP A 75 K K A 300 1555 1555 2.79 LINK OD1 ASN A 134 K K A 301 1555 1555 2.68 LINK O SER A 135 K K A 301 1555 1555 2.52 LINK OE2 GLU A 164 K K A 301 1555 1555 2.57 LINK OE1 GLN A 166 K K A 301 1555 1555 2.50 LINK OE1 GLN A 273 K K A 301 1555 1555 2.53 LINK K K A 300 O HOH A 347 1555 1555 2.85 LINK K K A 300 O HOH A 400 1555 1555 2.82 LINK K K A 300 O HOH A 421 1555 1555 2.95 LINK K K A 300 O HOH A 481 1555 1555 2.80 LINK K K A 301 O HOH A 529 1555 1555 2.58 CISPEP 1 VAL A 196 PRO A 197 0 3.64 SITE 1 AC1 6 PHE A 72 TRP A 75 HOH A 347 HOH A 400 SITE 2 AC1 6 HOH A 421 HOH A 481 SITE 1 AC2 6 ASN A 134 SER A 135 GLU A 164 GLN A 166 SITE 2 AC2 6 GLN A 273 HOH A 529 SITE 1 AC3 8 GLY A 98 GLY A 100 LYS A 215 GLY A 276 SITE 2 AC3 8 ASP A 277 ASP A 278 HOH A 403 HOH A 685 SITE 1 AC4 7 TYR A 159 GLU A 164 LYS A 245 GLN A 273 SITE 2 AC4 7 HOH A 529 HOH A 614 HOH A 631 SITE 1 AC5 4 LYS A 119 ASN A 120 LEU A 289 ASP A 290 SITE 1 AC6 7 GLU A 103 ALA A 104 TRP A 233 THR A 234 SITE 2 AC6 7 LYS A 235 GLN A 236 HOH A 637 SITE 1 AC7 4 VAL A 38 ALA A 39 HOH A 367 HOH A 487 SITE 1 AC8 7 ILE A 193 TYR A 230 HIS A 231 GLN A 236 SITE 2 AC8 7 TRP A 237 HOH A 463 HOH A 603 SITE 1 AC9 3 ASP A 91 LYS A 128 EDO A 310 SITE 1 BC1 6 LYS A 47 ALA A 48 LYS A 117 HOH A 401 SITE 2 BC1 6 HOH A 459 HOH A 469 SITE 1 BC2 5 TRP A 280 EDO A 308 HOH A 509 HOH A 510 SITE 2 BC2 5 HOH A 581 SITE 1 BC3 5 VAL A 83 PRO A 84 TRP A 87 HOH A 412 SITE 2 BC3 5 HOH A 635 SITE 1 BC4 3 VAL A 196 GLN A 198 HOH A 398 CRYST1 87.420 87.420 97.182 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011439 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011439 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010290 0.00000