HEADER STRUCTURAL GENOMICS 10-SEP-10 3OT1 TITLE CRYSTAL STRUCTURE OF VC2308 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-METHYL-5(B-HYDROXYETHYL)-THIAZOLE MONOPHOSPHATE COMPND 3 BIOSYNTHESIS ENZYME; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: CYS AT RESIDUE 108; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 4-METHYL-5(B-HYDROXYETHYL)-THIAZOLE MONOPHOSPHATE COMPND 9 BIOSYNTHESIS ENZYME; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: CSX AT RESIDUE 108 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: N16961; SOURCE 5 GENE: VC2308, VC_2308; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 GOLD MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MCSG7; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR; SOURCE 13 ORGANISM_TAXID: 243277; SOURCE 14 STRAIN: N16961; SOURCE 15 GENE: VC2308, VC_2308; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 GOLD MAGIC; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: MCSG7 KEYWDS CSGID, STRUCTURAL GENOMICS, VIBRIO CHOLERAE, CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS OF INFECTIOUS DISEASES, DJ-1 SUPERFAMILY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR E.NIEDZIALKOWSKA,Z.WAWRZAK,M.CHRUSZCZ,P.POREBSKI,T.SKARINA,X.HUANG, AUTHOR 2 S.GRIMSHAW,M.CYMBOROWSKI,A.SAVCHENKO,W.F.ANDERSON,W.MINOR,CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 13-APR-22 3OT1 1 AUTHOR JRNL REMARK SEQADV REVDAT 2 2 1 LINK REVDAT 1 22-SEP-10 3OT1 0 JRNL AUTH E.NIEDZIALKOWSKA,Z.WAWRZAK,M.CHRUSZCZ,P.POREBSKI,T.SKARINA, JRNL AUTH 2 X.HUANG,S.GRIMSHAW,M.CYMBOROWSKI,A.SAVCHENKO,W.F.ANDERSON, JRNL AUTH 3 W.MINOR,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS JRNL AUTH 4 DISEASES (CSGID) JRNL TITL CRYSTAL STRUCTURE OF VC2308 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 109812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5797 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.19 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7215 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 359 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2927 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 579 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.037 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.021 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.981 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3236 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2120 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4447 ; 1.500 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5245 ; 2.334 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 460 ; 6.053 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;37.697 ;24.427 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 536 ;12.980 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;13.788 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 526 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3736 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 643 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2100 ; 1.297 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 850 ; 1.543 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3390 ; 1.932 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1136 ; 2.926 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1032 ; 4.236 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3236 ; 1.373 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3OT1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061536. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DIAMOND LAUE MONOCHROMATOR REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115862 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.160 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 9.120 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : 0.61000 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 MLPHARE, SHELXD, DM, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TACSIMATE 35%, PHENOL 10MM, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.19350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.79600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.34150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.79600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.19350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.34150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 GLU A 2 REMARK 465 GLN A 3 REMARK 465 GLY A 4 REMARK 465 MSE A 5 REMARK 465 SER A 205 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 GLU B 2 REMARK 465 GLN B 3 REMARK 465 GLY B 4 REMARK 465 ILE B 201 REMARK 465 ASP B 202 REMARK 465 ALA B 203 REMARK 465 GLN B 204 REMARK 465 SER B 205 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 117 CE NZ REMARK 470 LYS B 117 CD CE NZ REMARK 470 GLU B 196 CG CD OE1 OE2 REMARK 470 SER B 198 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 108 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 108 -125.84 64.85 REMARK 500 VAL A 114 -63.45 -106.39 REMARK 500 CSX B 108 -116.92 62.32 REMARK 500 CSX B 108 -120.41 68.03 REMARK 500 VAL B 114 -64.07 -106.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 207 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 40 O REMARK 620 2 GLY B 42 O 124.5 REMARK 620 3 THR B 60 OG1 110.6 124.6 REMARK 620 4 GLU B 62 OE1 90.0 104.9 78.3 REMARK 620 5 HOH B 335 O 89.6 84.6 91.3 168.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP04323 RELATED DB: TARGETDB DBREF 3OT1 A 1 205 UNP Q9KPQ8 Q9KPQ8_VIBCH 1 205 DBREF 3OT1 B 1 205 UNP Q9KPQ8 Q9KPQ8_VIBCH 1 205 SEQADV 3OT1 SER A -2 UNP Q9KPQ8 EXPRESSION TAG SEQADV 3OT1 ASN A -1 UNP Q9KPQ8 EXPRESSION TAG SEQADV 3OT1 ALA A 0 UNP Q9KPQ8 EXPRESSION TAG SEQADV 3OT1 SER B -2 UNP Q9KPQ8 EXPRESSION TAG SEQADV 3OT1 ASN B -1 UNP Q9KPQ8 EXPRESSION TAG SEQADV 3OT1 ALA B 0 UNP Q9KPQ8 EXPRESSION TAG SEQRES 1 A 208 SER ASN ALA MSE GLU GLN GLY MSE SER LYS ARG ILE LEU SEQRES 2 A 208 VAL PRO VAL ALA HIS GLY SER GLU GLU MSE GLU THR VAL SEQRES 3 A 208 ILE ILE VAL ASP THR LEU VAL ARG ALA GLY PHE GLN VAL SEQRES 4 A 208 THR MSE ALA ALA VAL GLY ASP LYS LEU GLN VAL GLN GLY SEQRES 5 A 208 SER ARG GLY VAL TRP LEU THR ALA GLU GLN THR LEU GLU SEQRES 6 A 208 ALA CYS SER ALA GLU ALA PHE ASP ALA LEU ALA LEU PRO SEQRES 7 A 208 GLY GLY VAL GLY GLY ALA GLN ALA PHE ALA ASP SER THR SEQRES 8 A 208 ALA LEU LEU ALA LEU ILE ASP ALA PHE SER GLN GLN GLY SEQRES 9 A 208 LYS LEU VAL ALA ALA ILE CYS ALA THR PRO ALA LEU VAL SEQRES 10 A 208 PHE ALA LYS GLN GLN LYS PHE VAL GLY ALA ARG MSE THR SEQRES 11 A 208 CYS HIS PRO ASN PHE PHE ASP HIS ILE PRO SER GLU ARG SEQRES 12 A 208 LEU SER ARG GLN ARG VAL CYS TYR TYR ALA THR GLN HIS SEQRES 13 A 208 LEU LEU THR SER GLN GLY PRO GLY THR ALA LEU GLU PHE SEQRES 14 A 208 ALA LEU ALA MSE ILE ALA LEU LEU ALA GLY VAL GLU LEU SEQRES 15 A 208 ALA GLN HIS VAL ALA ALA PRO MSE VAL LEU HIS PRO GLN SEQRES 16 A 208 GLN LEU THR GLU LEU SER GLY PHE ILE ASP ALA GLN SER SEQRES 1 B 208 SER ASN ALA MSE GLU GLN GLY MSE SER LYS ARG ILE LEU SEQRES 2 B 208 VAL PRO VAL ALA HIS GLY SER GLU GLU MSE GLU THR VAL SEQRES 3 B 208 ILE ILE VAL ASP THR LEU VAL ARG ALA GLY PHE GLN VAL SEQRES 4 B 208 THR MSE ALA ALA VAL GLY ASP LYS LEU GLN VAL GLN GLY SEQRES 5 B 208 SER ARG GLY VAL TRP LEU THR ALA GLU GLN THR LEU GLU SEQRES 6 B 208 ALA CYS SER ALA GLU ALA PHE ASP ALA LEU ALA LEU PRO SEQRES 7 B 208 GLY GLY VAL GLY GLY ALA GLN ALA PHE ALA ASP SER THR SEQRES 8 B 208 ALA LEU LEU ALA LEU ILE ASP ALA PHE SER GLN GLN GLY SEQRES 9 B 208 LYS LEU VAL ALA ALA ILE CSX ALA THR PRO ALA LEU VAL SEQRES 10 B 208 PHE ALA LYS GLN GLN LYS PHE VAL GLY ALA ARG MSE THR SEQRES 11 B 208 CYS HIS PRO ASN PHE PHE ASP HIS ILE PRO SER GLU ARG SEQRES 12 B 208 LEU SER ARG GLN ARG VAL CYS TYR TYR ALA THR GLN HIS SEQRES 13 B 208 LEU LEU THR SER GLN GLY PRO GLY THR ALA LEU GLU PHE SEQRES 14 B 208 ALA LEU ALA MSE ILE ALA LEU LEU ALA GLY VAL GLU LEU SEQRES 15 B 208 ALA GLN HIS VAL ALA ALA PRO MSE VAL LEU HIS PRO GLN SEQRES 16 B 208 GLN LEU THR GLU LEU SER GLY PHE ILE ASP ALA GLN SER MODRES 3OT1 MSE A 20 MET SELENOMETHIONINE MODRES 3OT1 MSE A 38 MET SELENOMETHIONINE MODRES 3OT1 MSE A 126 MET SELENOMETHIONINE MODRES 3OT1 MSE A 170 MET SELENOMETHIONINE MODRES 3OT1 MSE A 187 MET SELENOMETHIONINE MODRES 3OT1 MSE B 5 MET SELENOMETHIONINE MODRES 3OT1 MSE B 20 MET SELENOMETHIONINE MODRES 3OT1 MSE B 38 MET SELENOMETHIONINE MODRES 3OT1 CSX B 108 CYS S-OXY CYSTEINE MODRES 3OT1 MSE B 126 MET SELENOMETHIONINE MODRES 3OT1 MSE B 170 MET SELENOMETHIONINE MODRES 3OT1 MSE B 187 MET SELENOMETHIONINE HET MSE A 20 13 HET MSE A 38 13 HET MSE A 126 8 HET MSE A 170 8 HET MSE A 187 16 HET MSE B 5 8 HET MSE B 20 13 HET MSE B 38 16 HET CSX B 108 13 HET MSE B 126 8 HET MSE B 170 8 HET MSE B 187 8 HET CL B 206 1 HET NA B 207 1 HET CL B 208 1 HETNAM MSE SELENOMETHIONINE HETNAM CSX S-OXY CYSTEINE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 CSX C3 H7 N O3 S FORMUL 3 CL 2(CL 1-) FORMUL 4 NA NA 1+ FORMUL 6 HOH *579(H2 O) HELIX 1 1 GLU A 18 ALA A 32 1 15 HELIX 2 2 GLU A 62 CYS A 64 5 3 HELIX 3 3 SER A 65 PHE A 69 5 5 HELIX 4 4 GLY A 77 ASP A 86 1 10 HELIX 5 5 SER A 87 GLN A 100 1 14 HELIX 6 6 ALA A 109 VAL A 114 1 6 HELIX 7 7 HIS A 129 ILE A 136 5 8 HELIX 8 8 ALA A 150 GLN A 152 5 3 HELIX 9 9 GLY A 159 GLY A 161 5 3 HELIX 10 10 THR A 162 GLY A 176 1 15 HELIX 11 11 GLY A 176 ALA A 185 1 10 HELIX 12 12 PRO A 186 VAL A 188 5 3 HELIX 13 13 HIS A 190 GLY A 199 1 10 HELIX 14 14 GLU B 18 ALA B 32 1 15 HELIX 15 15 GLU B 62 CYS B 64 5 3 HELIX 16 16 SER B 65 PHE B 69 5 5 HELIX 17 17 GLY B 77 ASP B 86 1 10 HELIX 18 18 SER B 87 GLN B 100 1 14 HELIX 19 19 ALA B 109 VAL B 114 1 6 HELIX 20 20 HIS B 129 ILE B 136 5 8 HELIX 21 21 ALA B 150 GLN B 152 5 3 HELIX 22 22 GLY B 159 GLY B 161 5 3 HELIX 23 23 THR B 162 GLY B 176 1 15 HELIX 24 24 GLY B 176 ALA B 185 1 10 HELIX 25 25 PRO B 186 VAL B 188 5 3 HELIX 26 26 HIS B 190 THR B 195 5 6 SHEET 1 A 7 GLN A 59 THR A 60 0 SHEET 2 A 7 GLN A 35 ALA A 40 1 N ALA A 40 O GLN A 59 SHEET 3 A 7 ARG A 8 VAL A 13 1 N VAL A 11 O THR A 37 SHEET 4 A 7 ALA A 71 LEU A 74 1 O ALA A 73 N LEU A 10 SHEET 5 A 7 LEU A 103 ILE A 107 1 O ALA A 105 N LEU A 74 SHEET 6 A 7 LEU A 154 SER A 157 1 O LEU A 155 N VAL A 104 SHEET 7 A 7 VAL A 146 TYR A 149 -1 N TYR A 149 O LEU A 154 SHEET 1 B 2 GLN A 46 GLN A 48 0 SHEET 2 B 2 TRP A 54 THR A 56 -1 O LEU A 55 N VAL A 47 SHEET 1 C 7 GLN B 59 THR B 60 0 SHEET 2 C 7 GLN B 35 ALA B 40 1 N ALA B 40 O GLN B 59 SHEET 3 C 7 ARG B 8 VAL B 13 1 N VAL B 11 O THR B 37 SHEET 4 C 7 ALA B 71 LEU B 74 1 O ALA B 73 N LEU B 10 SHEET 5 C 7 LEU B 103 ILE B 107 1 O ALA B 105 N LEU B 74 SHEET 6 C 7 LEU B 154 SER B 157 1 O LEU B 155 N VAL B 104 SHEET 7 C 7 VAL B 146 TYR B 149 -1 N TYR B 149 O LEU B 154 SHEET 1 D 2 GLN B 46 GLN B 48 0 SHEET 2 D 2 TRP B 54 THR B 56 -1 O LEU B 55 N VAL B 47 LINK C GLU A 19 N MSE A 20 1555 1555 1.34 LINK C MSE A 20 N GLU A 21 1555 1555 1.33 LINK C THR A 37 N MSE A 38 1555 1555 1.33 LINK C MSE A 38 N ALA A 39 1555 1555 1.33 LINK C ARG A 125 N MSE A 126 1555 1555 1.33 LINK C MSE A 126 N THR A 127 1555 1555 1.33 LINK C ALA A 169 N MSE A 170 1555 1555 1.33 LINK C MSE A 170 N ILE A 171 1555 1555 1.32 LINK C PRO A 186 N AMSE A 187 1555 1555 1.29 LINK C PRO A 186 N BMSE A 187 1555 1555 1.34 LINK C AMSE A 187 N VAL A 188 1555 1555 1.34 LINK C BMSE A 187 N VAL A 188 1555 1555 1.33 LINK C MSE B 5 N ASER B 6 1555 1555 1.32 LINK C MSE B 5 N BSER B 6 1555 1555 1.33 LINK C GLU B 19 N MSE B 20 1555 1555 1.33 LINK C MSE B 20 N GLU B 21 1555 1555 1.33 LINK C THR B 37 N AMSE B 38 1555 1555 1.33 LINK C THR B 37 N BMSE B 38 1555 1555 1.33 LINK C AMSE B 38 N ALA B 39 1555 1555 1.34 LINK C BMSE B 38 N ALA B 39 1555 1555 1.34 LINK C ILE B 107 N ACSX B 108 1555 1555 1.33 LINK C ILE B 107 N BCSX B 108 1555 1555 1.33 LINK C ACSX B 108 N ALA B 109 1555 1555 1.33 LINK C BCSX B 108 N ALA B 109 1555 1555 1.32 LINK C ARG B 125 N MSE B 126 1555 1555 1.33 LINK C MSE B 126 N THR B 127 1555 1555 1.33 LINK C ALA B 169 N MSE B 170 1555 1555 1.33 LINK C MSE B 170 N ILE B 171 1555 1555 1.33 LINK C PRO B 186 N MSE B 187 1555 1555 1.33 LINK C MSE B 187 N VAL B 188 1555 1555 1.33 LINK O ALA B 40 NA NA B 207 1555 1555 2.29 LINK O GLY B 42 NA NA B 207 1555 1555 2.14 LINK OG1 THR B 60 NA NA B 207 1555 1555 2.28 LINK OE1 GLU B 62 NA NA B 207 1555 1555 2.27 LINK NA NA B 207 O HOH B 335 1555 1555 2.43 SITE 1 AC1 3 ARG B 51 GLY B 77 VAL B 78 SITE 1 AC2 6 ALA B 40 GLY B 42 THR B 60 LEU B 61 SITE 2 AC2 6 GLU B 62 HOH B 335 SITE 1 AC3 5 HIS A 129 HOH A 330 ARG B 31 PRO B 186 SITE 2 AC3 5 HOH B 301 CRYST1 64.387 64.683 81.592 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015531 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012256 0.00000