HEADER TRANSFERASE 11-SEP-10 3OTB TITLE CRYSTAL STRUCTURE OF HUMAN TRNAHIS GUANYLYLTRANSFERASE (THG1) - DGTP TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA(HIS) GUANYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 30-298; COMPND 5 SYNONYM: TRNA-HISTIDINE GUANYLYLTRANSFERASE, INTERPHASE CYTOPLASMIC COMPND 6 FOCI PROTEIN 45; COMPND 7 EC: 2.7.7.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: KATO III; SOURCE 6 GENE: ICF45, THG1L; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3) PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PME182-FL KEYWDS GUANYLYLTRANSFERASE, POLYMERASE-LIKE PALM DOMAIN, CATALYTIC KEYWDS 2 CARBOXYLATES, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.HYDE,B.E.ECKENROTH,S.DOUBLIE REVDAT 5 21-FEB-24 3OTB 1 REMARK LINK REVDAT 4 09-APR-14 3OTB 1 SOURCE VERSN REVDAT 3 08-DEC-10 3OTB 1 JRNL REVDAT 2 24-NOV-10 3OTB 1 JRNL REVDAT 1 17-NOV-10 3OTB 0 JRNL AUTH S.J.HYDE,B.E.ECKENROTH,B.A.SMITH,W.A.EBERLEY,N.H.HEINTZ, JRNL AUTH 2 J.E.JACKMAN,S.DOUBLIE JRNL TITL TRNAHIS GUANYLYLTRANSFERASE (THG1), A UNIQUE 3'-5' JRNL TITL 2 NUCLEOTIDYL TRANSFERASE, SHARES UNEXPECTED STRUCTURAL JRNL TITL 3 HOMOLOGY WITH CANONICAL 5'-3' DNA POLYMERASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 20305 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 21059936 JRNL DOI 10.1073/PNAS.1010436107 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 17681 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1770 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.06 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1557 REMARK 3 BIN R VALUE (WORKING SET) : 0.3712 REMARK 3 BIN FREE R VALUE : 0.3987 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 183 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3950 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 100.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.06600 REMARK 3 B22 (A**2) : -6.06600 REMARK 3 B33 (A**2) : 12.13300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.024 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 6.289 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.606 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.805 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 70.71 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : X-DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR:PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : X-DNA-RNA-TEST.TOP REMARK 3 TOPOLOGY FILE 3 : CNS_TOPPAR:WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3OTB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061546. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 104 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17903 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.10 REMARK 200 R MERGE FOR SHELL (I) : 0.95700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA FORMATE, PH 7, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.61350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.45600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.45600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.92025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.45600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.45600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.30675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.45600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.45600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.92025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.45600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.45600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.30675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.61350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A TETRAMER GENERATED FROM THE DIMER REMARK 300 IN THE ASYMETRIC UNIT BY THE OPERATION: -Y, -X, -Z+1/2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -191.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 40.61350 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 LYS A 216 REMARK 465 VAL A 217 REMARK 465 ASP A 218 REMARK 465 GLU A 219 REMARK 465 VAL A 220 REMARK 465 MET A 221 REMARK 465 THR A 222 REMARK 465 LYS A 223 REMARK 465 GLU A 224 REMARK 465 ILE A 225 REMARK 465 LYS A 226 REMARK 465 LEU A 227 REMARK 465 PRO A 228 REMARK 465 THR A 229 REMARK 465 GLU A 230 REMARK 465 MET A 231 REMARK 465 GLU A 232 REMARK 465 GLY A 233 REMARK 465 LYS A 234 REMARK 465 LYS A 235 REMARK 465 MET A 236 REMARK 465 ALA A 237 REMARK 465 VAL A 238 REMARK 465 THR A 239 REMARK 465 ARG A 240 REMARK 465 THR A 241 REMARK 465 ARG A 242 REMARK 465 ASP A 268 REMARK 465 SER A 269 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 465 LYS B 216 REMARK 465 VAL B 217 REMARK 465 ASP B 218 REMARK 465 GLU B 219 REMARK 465 VAL B 220 REMARK 465 MET B 221 REMARK 465 THR B 222 REMARK 465 LYS B 223 REMARK 465 GLU B 224 REMARK 465 ILE B 225 REMARK 465 LYS B 226 REMARK 465 LEU B 227 REMARK 465 PRO B 228 REMARK 465 THR B 229 REMARK 465 GLU B 230 REMARK 465 MET B 231 REMARK 465 GLU B 232 REMARK 465 GLY B 233 REMARK 465 LYS B 234 REMARK 465 LYS B 235 REMARK 465 MET B 236 REMARK 465 ALA B 237 REMARK 465 VAL B 238 REMARK 465 THR B 239 REMARK 465 ARG B 240 REMARK 465 THR B 241 REMARK 465 ARG B 242 REMARK 465 ASP B 268 REMARK 465 SER B 269 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 5 -5.08 83.28 REMARK 500 PHE A 6 -21.51 -149.71 REMARK 500 ASP A 16 28.45 -150.67 REMARK 500 ALA A 20 155.26 -44.58 REMARK 500 ASN A 32 27.51 37.06 REMARK 500 ASN A 41 73.57 43.30 REMARK 500 SER A 48 -36.73 -33.32 REMARK 500 ASP A 67 22.94 35.13 REMARK 500 ILE A 70 154.06 176.39 REMARK 500 GLN A 74 159.81 178.80 REMARK 500 SER A 75 -144.01 32.68 REMARK 500 ASP A 76 42.94 -86.57 REMARK 500 PHE A 110 -74.92 -56.34 REMARK 500 ARG A 130 154.74 179.22 REMARK 500 GLN A 166 -79.32 -80.33 REMARK 500 ASN A 200 -10.06 -49.49 REMARK 500 PRO A 204 -3.47 -59.76 REMARK 500 ASP A 255 -39.00 -37.00 REMARK 500 LYS B 5 -4.76 80.79 REMARK 500 PHE B 6 -21.78 -150.03 REMARK 500 ASP B 16 26.21 -149.93 REMARK 500 ALA B 20 155.06 -43.01 REMARK 500 ASN B 32 26.97 38.50 REMARK 500 ASN B 41 73.14 42.80 REMARK 500 SER B 48 -37.46 -31.97 REMARK 500 LYS B 56 -70.31 -70.38 REMARK 500 ASP B 67 22.97 34.50 REMARK 500 ILE B 70 154.89 177.90 REMARK 500 GLN B 74 159.96 173.06 REMARK 500 SER B 75 -144.93 31.86 REMARK 500 ASP B 76 42.37 -86.44 REMARK 500 PHE B 110 -75.37 -57.19 REMARK 500 GLN B 166 -78.96 -80.78 REMARK 500 ASN B 200 -9.91 -48.68 REMARK 500 ASP B 255 -39.24 -37.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 29 OD1 REMARK 620 2 GLY A 30 O 89.5 REMARK 620 3 ASP A 76 OD1 85.9 76.9 REMARK 620 4 DGT A 301 O2A 89.8 148.0 71.1 REMARK 620 5 DGT A 301 O2B 163.2 94.4 79.1 78.3 REMARK 620 6 DGT A 301 O1G 85.3 113.6 166.2 98.2 107.9 REMARK 620 7 DGT A 301 O2G 126.5 69.9 131.9 133.0 70.0 61.8 REMARK 620 8 DGT A 301 O3B 134.1 121.0 131.0 80.7 56.0 52.5 52.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 29 OD2 REMARK 620 2 ASP A 76 OD2 56.4 REMARK 620 3 DGT A 301 O2A 80.2 72.6 REMARK 620 4 DGT A 301 O5' 131.8 93.7 53.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 3PO A 302 O2B REMARK 620 2 3PO A 302 O2A 81.7 REMARK 620 3 3PO A 302 O1G 74.1 83.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 3PO B 302 O2B REMARK 620 2 3PO B 302 O1G 72.7 REMARK 620 3 3PO B 302 O2A 78.9 80.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 29 OD1 REMARK 620 2 GLY B 30 O 87.9 REMARK 620 3 ASP B 76 OD1 86.8 76.0 REMARK 620 4 DGT B 301 O2A 91.6 148.1 72.1 REMARK 620 5 DGT B 301 O2B 166.3 93.8 80.5 79.7 REMARK 620 6 DGT B 301 O1G 85.2 111.7 168.6 100.0 106.7 REMARK 620 7 DGT B 301 O2G 125.1 69.4 130.5 133.2 68.0 60.9 REMARK 620 8 DGT B 301 O3B 134.4 120.1 132.0 81.8 55.2 52.4 52.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 29 OD2 REMARK 620 2 ASP B 76 OD2 54.5 REMARK 620 3 DGT B 301 O2A 80.0 72.4 REMARK 620 4 DGT B 301 O5' 132.3 95.7 54.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3PO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3PO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OTC RELATED DB: PDB REMARK 900 RELATED ID: 3OTD RELATED DB: PDB REMARK 900 RELATED ID: 3OTE RELATED DB: PDB DBREF 3OTB A 1 269 UNP Q9NWX6 THG1_HUMAN 30 298 DBREF 3OTB B 1 269 UNP Q9NWX6 THG1_HUMAN 30 298 SEQRES 1 A 269 MET ALA LYS SER LYS PHE GLU TYR VAL ARG ASP PHE GLU SEQRES 2 A 269 ALA ASP ASP THR CYS LEU ALA HIS CYS TRP VAL VAL VAL SEQRES 3 A 269 ARG LEU ASP GLY ARG ASN PHE HIS ARG PHE ALA GLU LYS SEQRES 4 A 269 HIS ASN PHE ALA LYS PRO ASN ASP SER ARG ALA LEU GLN SEQRES 5 A 269 LEU MET THR LYS CYS ALA GLN THR VAL MET GLU GLU LEU SEQRES 6 A 269 GLU ASP ILE VAL ILE ALA TYR GLY GLN SER ASP GLU TYR SEQRES 7 A 269 SER PHE VAL PHE LYS ARG LYS THR ASN TRP PHE LYS ARG SEQRES 8 A 269 ARG ALA SER LYS PHE MET THR HIS VAL ALA SER GLN PHE SEQRES 9 A 269 ALA SER SER TYR VAL PHE TYR TRP ARG ASP TYR PHE GLU SEQRES 10 A 269 ASP GLN PRO LEU LEU TYR PRO PRO GLY PHE ASP GLY ARG SEQRES 11 A 269 VAL VAL VAL TYR PRO SER ASN GLN THR LEU LYS ASP TYR SEQRES 12 A 269 LEU SER TRP ARG GLN ALA ASP CYS HIS ILE ASN ASN LEU SEQRES 13 A 269 TYR ASN THR VAL PHE TRP ALA LEU ILE GLN GLN SER GLY SEQRES 14 A 269 LEU THR PRO VAL GLN ALA GLN GLY ARG LEU GLN GLY THR SEQRES 15 A 269 LEU ALA ALA ASP LYS ASN GLU ILE LEU PHE SER GLU PHE SEQRES 16 A 269 ASN ILE ASN TYR ASN ASN GLU LEU PRO MET TYR ARG LYS SEQRES 17 A 269 GLY THR VAL LEU ILE TRP GLN LYS VAL ASP GLU VAL MET SEQRES 18 A 269 THR LYS GLU ILE LYS LEU PRO THR GLU MET GLU GLY LYS SEQRES 19 A 269 LYS MET ALA VAL THR ARG THR ARG THR LYS PRO VAL PRO SEQRES 20 A 269 LEU HIS CYS ASP ILE ILE GLY ASP ALA PHE TRP LYS GLU SEQRES 21 A 269 HIS PRO GLU ILE LEU ASP GLU ASP SER SEQRES 1 B 269 MET ALA LYS SER LYS PHE GLU TYR VAL ARG ASP PHE GLU SEQRES 2 B 269 ALA ASP ASP THR CYS LEU ALA HIS CYS TRP VAL VAL VAL SEQRES 3 B 269 ARG LEU ASP GLY ARG ASN PHE HIS ARG PHE ALA GLU LYS SEQRES 4 B 269 HIS ASN PHE ALA LYS PRO ASN ASP SER ARG ALA LEU GLN SEQRES 5 B 269 LEU MET THR LYS CYS ALA GLN THR VAL MET GLU GLU LEU SEQRES 6 B 269 GLU ASP ILE VAL ILE ALA TYR GLY GLN SER ASP GLU TYR SEQRES 7 B 269 SER PHE VAL PHE LYS ARG LYS THR ASN TRP PHE LYS ARG SEQRES 8 B 269 ARG ALA SER LYS PHE MET THR HIS VAL ALA SER GLN PHE SEQRES 9 B 269 ALA SER SER TYR VAL PHE TYR TRP ARG ASP TYR PHE GLU SEQRES 10 B 269 ASP GLN PRO LEU LEU TYR PRO PRO GLY PHE ASP GLY ARG SEQRES 11 B 269 VAL VAL VAL TYR PRO SER ASN GLN THR LEU LYS ASP TYR SEQRES 12 B 269 LEU SER TRP ARG GLN ALA ASP CYS HIS ILE ASN ASN LEU SEQRES 13 B 269 TYR ASN THR VAL PHE TRP ALA LEU ILE GLN GLN SER GLY SEQRES 14 B 269 LEU THR PRO VAL GLN ALA GLN GLY ARG LEU GLN GLY THR SEQRES 15 B 269 LEU ALA ALA ASP LYS ASN GLU ILE LEU PHE SER GLU PHE SEQRES 16 B 269 ASN ILE ASN TYR ASN ASN GLU LEU PRO MET TYR ARG LYS SEQRES 17 B 269 GLY THR VAL LEU ILE TRP GLN LYS VAL ASP GLU VAL MET SEQRES 18 B 269 THR LYS GLU ILE LYS LEU PRO THR GLU MET GLU GLY LYS SEQRES 19 B 269 LYS MET ALA VAL THR ARG THR ARG THR LYS PRO VAL PRO SEQRES 20 B 269 LEU HIS CYS ASP ILE ILE GLY ASP ALA PHE TRP LYS GLU SEQRES 21 B 269 HIS PRO GLU ILE LEU ASP GLU ASP SER HET DGT A 301 31 HET MG A 401 1 HET MG A 402 1 HET MG A 403 1 HET 3PO A 302 13 HET 3PO B 302 13 HET DGT B 301 31 HET MG B 401 1 HET MG B 402 1 HET MG B 403 1 HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM 3PO TRIPHOSPHATE FORMUL 3 DGT 2(C10 H16 N5 O13 P3) FORMUL 4 MG 6(MG 2+) FORMUL 7 3PO 2(H5 O10 P3) HELIX 1 1 PHE A 6 GLU A 13 5 8 HELIX 2 2 ASN A 32 HIS A 40 1 9 HELIX 3 3 ASP A 47 LEU A 65 1 19 HELIX 4 4 ASN A 87 ARG A 91 5 5 HELIX 5 5 ARG A 92 TYR A 111 1 20 HELIX 6 6 TYR A 111 PHE A 116 1 6 HELIX 7 7 SER A 136 LEU A 164 1 29 HELIX 8 8 THR A 171 GLN A 180 1 10 HELIX 9 9 LEU A 183 SER A 193 1 11 HELIX 10 10 ASN A 198 GLU A 202 5 5 HELIX 11 11 GLY A 254 HIS A 261 1 8 HELIX 12 12 PHE B 6 GLU B 13 5 8 HELIX 13 13 ASN B 32 HIS B 40 1 9 HELIX 14 14 ASP B 47 LEU B 65 1 19 HELIX 15 15 ASN B 87 ARG B 91 5 5 HELIX 16 16 ARG B 92 TYR B 111 1 20 HELIX 17 17 TYR B 111 PHE B 116 1 6 HELIX 18 18 SER B 136 LEU B 164 1 29 HELIX 19 19 THR B 171 GLN B 180 1 10 HELIX 20 20 LEU B 183 SER B 193 1 11 HELIX 21 21 ASN B 198 GLU B 202 5 5 HELIX 22 22 GLY B 254 HIS B 261 1 8 SHEET 1 A 3 PHE A 127 ASP A 128 0 SHEET 2 A 3 TRP A 23 GLY A 30 -1 N ASP A 29 O ASP A 128 SHEET 3 A 3 VAL A 131 TYR A 134 -1 O TYR A 134 N TRP A 23 SHEET 1 B 6 PHE A 127 ASP A 128 0 SHEET 2 B 6 TRP A 23 GLY A 30 -1 N ASP A 29 O ASP A 128 SHEET 3 B 6 GLU A 77 PHE A 82 -1 O TYR A 78 N LEU A 28 SHEET 4 B 6 ILE A 68 GLN A 74 -1 N ILE A 70 O VAL A 81 SHEET 5 B 6 THR A 210 TRP A 214 -1 O THR A 210 N GLY A 73 SHEET 6 B 6 PRO A 245 LEU A 248 -1 O VAL A 246 N ILE A 213 SHEET 1 C 3 PHE B 127 ASP B 128 0 SHEET 2 C 3 TRP B 23 GLY B 30 -1 N ASP B 29 O ASP B 128 SHEET 3 C 3 VAL B 131 TYR B 134 -1 O TYR B 134 N TRP B 23 SHEET 1 D 6 PHE B 127 ASP B 128 0 SHEET 2 D 6 TRP B 23 GLY B 30 -1 N ASP B 29 O ASP B 128 SHEET 3 D 6 GLU B 77 PHE B 82 -1 O TYR B 78 N LEU B 28 SHEET 4 D 6 ILE B 68 GLN B 74 -1 N ILE B 70 O VAL B 81 SHEET 5 D 6 THR B 210 TRP B 214 -1 O THR B 210 N GLY B 73 SHEET 6 D 6 PRO B 245 LEU B 248 -1 O VAL B 246 N ILE B 213 LINK OD1 ASP A 29 MG MG A 401 1555 1555 2.11 LINK OD2 ASP A 29 MG MG A 403 1555 1555 2.62 LINK O GLY A 30 MG MG A 401 1555 1555 2.09 LINK OD1 ASP A 76 MG MG A 401 1555 1555 2.28 LINK OD2 ASP A 76 MG MG A 403 1555 1555 2.34 LINK O2A DGT A 301 MG MG A 401 1555 1555 2.01 LINK O2B DGT A 301 MG MG A 401 1555 1555 2.23 LINK O1G DGT A 301 MG MG A 401 1555 1555 2.46 LINK O2G DGT A 301 MG MG A 401 1555 1555 2.52 LINK O3B DGT A 301 MG MG A 401 1555 1555 2.93 LINK O2A DGT A 301 MG MG A 403 1555 1555 2.69 LINK O5' DGT A 301 MG MG A 403 1555 1555 2.90 LINK O2B 3PO A 302 MG MG B 402 1555 1555 2.11 LINK O2A 3PO A 302 MG MG B 402 1555 1555 2.57 LINK O1G 3PO A 302 MG MG B 402 1555 1555 2.62 LINK MG MG A 402 O2B 3PO B 302 1555 1555 2.04 LINK MG MG A 402 O1G 3PO B 302 1555 1555 2.63 LINK MG MG A 402 O2A 3PO B 302 1555 1555 2.67 LINK OD1 ASP B 29 MG MG B 401 1555 1555 2.10 LINK OD2 ASP B 29 MG MG B 403 1555 1555 2.66 LINK O GLY B 30 MG MG B 401 1555 1555 2.08 LINK OD1 ASP B 76 MG MG B 401 1555 1555 2.25 LINK OD2 ASP B 76 MG MG B 403 1555 1555 2.33 LINK O2A DGT B 301 MG MG B 401 1555 1555 2.01 LINK O2B DGT B 301 MG MG B 401 1555 1555 2.28 LINK O1G DGT B 301 MG MG B 401 1555 1555 2.47 LINK O2G DGT B 301 MG MG B 401 1555 1555 2.56 LINK O3B DGT B 301 MG MG B 401 1555 1555 2.95 LINK O2A DGT B 301 MG MG B 403 1555 1555 2.64 LINK O5' DGT B 301 MG MG B 403 1555 1555 2.83 CISPEP 1 LYS A 44 PRO A 45 0 -0.35 CISPEP 2 LYS B 44 PRO B 45 0 -0.41 SITE 1 AC1 17 ASP A 29 GLY A 30 ARG A 31 ASN A 32 SITE 2 AC1 17 PHE A 33 HIS A 34 ALA A 37 PHE A 42 SITE 3 AC1 17 ALA A 43 PRO A 45 ASN A 46 ASP A 47 SITE 4 AC1 17 SER A 75 ASP A 76 MG A 401 MG A 402 SITE 5 AC1 17 MG A 403 SITE 1 AC2 4 ASP A 29 GLY A 30 ASP A 76 DGT A 301 SITE 1 AC3 5 ARG A 27 ARG A 130 MG A 402 ARG B 92 SITE 2 AC3 5 LYS B 95 SITE 1 AC4 2 DGT A 301 3PO B 302 SITE 1 AC5 4 ASP A 29 SER A 75 ASP A 76 DGT A 301 SITE 1 AC6 17 ASP B 29 GLY B 30 ARG B 31 ASN B 32 SITE 2 AC6 17 PHE B 33 HIS B 34 ALA B 37 PHE B 42 SITE 3 AC6 17 ALA B 43 PRO B 45 ASN B 46 ASP B 47 SITE 4 AC6 17 SER B 75 ASP B 76 MG B 401 MG B 402 SITE 5 AC6 17 MG B 403 SITE 1 AC7 4 ASP B 29 GLY B 30 ASP B 76 DGT B 301 SITE 1 AC8 5 ARG A 92 LYS A 95 ARG B 27 ARG B 130 SITE 2 AC8 5 MG B 402 SITE 1 AC9 2 3PO A 302 DGT B 301 SITE 1 BC1 4 ASP B 29 SER B 75 ASP B 76 DGT B 301 CRYST1 140.912 140.912 81.227 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007097 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007097 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012311 0.00000