HEADER TRANSFERASE 14-SEP-10 3OU5 OBSLTE 20-JUN-18 3OU5 6DK3 TITLE HUMAN MITOCHONDRIAL SERINE HYDROXYMETHYLTRANSFERASE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SHMT, SERINE METHYLASE, GLYCINE HYDROXYMETHYLTRANSFERASE; COMPND 5 EC: 2.1.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SHMT2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS SERINE HYDROXYMETHYLTRANSFERASE 2, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,H.WU,H.ZENG,P.LOPPNAU,M.SUNDSTROM,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 A.BOCHKAREV,A.N.PLOTNIKOV,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 20-JUN-18 3OU5 1 OBSLTE REVDAT 2 24-JAN-18 3OU5 1 JRNL REVDAT 1 27-OCT-10 3OU5 0 SPRSDE 27-OCT-10 3OU5 2A7V JRNL AUTH H.WU,A.DONG,H.ZENG,P.LOPPNAU,M.SUNDSTROM,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,A.BOCHKAREV,A.N.PLOTNIKOV, JRNL AUTH 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL SERINE JRNL TITL 2 HYDROXYMETHYLTRANSFERASE 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 30632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 641 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2156 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3188 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.41000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : 1.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.370 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3241 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4385 ; 1.060 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 417 ; 7.017 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;36.132 ;23.007 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 527 ;14.966 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;20.823 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 497 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2469 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1401 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2203 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 215 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.165 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.163 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2097 ; 1.521 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3326 ; 2.499 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1144 ; 3.852 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1059 ; 5.857 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3OU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061576. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.912386 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : SI(11) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31273 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 71.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 24.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.39700 REMARK 200 R SYM FOR SHELL (I) : 0.39700 REMARK 200 FOR SHELL : 2.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1LS3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG8000, 0.1 M TRIS-HCL,PH 8.0 , REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.51700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.51450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.51700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.51450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -24.19678 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 71.19976 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLY A 1 REMARK 465 GLN A 2 REMARK 465 LEU A 3 REMARK 465 VAL A 4 REMARK 465 ARG A 5 REMARK 465 MET A 6 REMARK 465 ALA A 7 REMARK 465 ILE A 8 REMARK 465 ARG A 9 REMARK 465 ALA A 10 REMARK 465 GLN A 11 REMARK 465 HIS A 12 REMARK 465 SER A 13 REMARK 465 ASN A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 GLN A 17 REMARK 465 THR A 18 REMARK 465 GLN A 19 REMARK 465 THR A 20 REMARK 465 GLY A 21 REMARK 465 GLU A 22 REMARK 465 ALA A 23 REMARK 465 ASN A 24 REMARK 465 ARG A 25 REMARK 465 TYR A 84 REMARK 465 PRO A 85 REMARK 465 GLY A 86 REMARK 465 LYS A 87 REMARK 465 ARG A 88 REMARK 465 TYR A 89 REMARK 465 TYR A 90 REMARK 465 GLY A 91 REMARK 465 GLY A 92 REMARK 465 ALA A 93 REMARK 465 PRO A 141 REMARK 465 LEU A 150 REMARK 465 PRO A 151 REMARK 465 ASP A 152 REMARK 465 GLY A 153 REMARK 465 GLY A 154 REMARK 465 HIS A 155 REMARK 465 LEU A 156 REMARK 465 THR A 157 REMARK 465 HIS A 158 REMARK 465 GLY A 159 REMARK 465 TYR A 160 REMARK 465 MET A 161 REMARK 465 SER A 162 REMARK 465 ASP A 163 REMARK 465 VAL A 164 REMARK 465 LYS A 165 REMARK 465 ARG A 166 REMARK 465 ILE A 167 REMARK 465 SER A 168 REMARK 465 ALA A 169 REMARK 465 THR A 170 REMARK 465 SER A 171 REMARK 465 ILE A 172 REMARK 465 PHE A 173 REMARK 465 PHE A 174 REMARK 465 GLU A 175 REMARK 465 SER A 176 REMARK 465 MET A 177 REMARK 465 LYS A 286 REMARK 465 THR A 287 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 27 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 27 CZ3 CH2 REMARK 470 ARG A 46 CZ NH1 NH2 REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 TYR A 80 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 81 OG REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 VAL A 95 CG1 CG2 REMARK 470 VAL A 96 CG1 CG2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 ILE A 99 CD1 REMARK 470 GLN A 123 CG CD OE1 NE2 REMARK 470 GLN A 140 CG CD OE1 NE2 REMARK 470 HIS A 142 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 145 CG1 CG2 CD1 REMARK 470 LEU A 148 CD1 CD2 REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 LEU A 195 CG CD1 CD2 REMARK 470 LEU A 199 CG CD1 CD2 REMARK 470 LYS A 246 NZ REMARK 470 ASP A 284 CG OD1 OD2 REMARK 470 ARG A 289 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 303 CG1 CG2 REMARK 470 LEU A 307 CD1 CD2 REMARK 470 HIS A 312 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 403 CG1 CG2 CD1 REMARK 470 GLN A 419 OE1 NE2 REMARK 470 GLU A 441 CG CD OE1 OE2 REMARK 470 LYS A 443 NZ REMARK 470 LYS A 445 NZ REMARK 470 LYS A 448 NZ REMARK 470 LYS A 458 CG CD CE NZ REMARK 470 GLN A 464 OE1 NE2 REMARK 470 GLN A 475 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 622 O HOH A 640 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 126 -159.66 -144.70 REMARK 500 LYS A 264 -110.04 -101.91 REMARK 500 ARG A 267 35.06 70.77 REMARK 500 ARG A 289 -104.58 51.18 REMARK 500 ASN A 363 -142.14 -140.96 REMARK 500 THR A 404 67.94 -117.32 REMARK 500 ALA A 447 -79.49 -111.42 REMARK 500 REMARK 500 REMARK: NULL DBREF 3OU5 A 1 488 UNP P34897 GLYM_HUMAN 17 504 SEQADV 3OU5 GLY A -1 UNP P34897 EXPRESSION TAG SEQADV 3OU5 SER A 0 UNP P34897 EXPRESSION TAG SEQRES 1 A 490 GLY SER GLY GLN LEU VAL ARG MET ALA ILE ARG ALA GLN SEQRES 2 A 490 HIS SER ASN ALA ALA GLN THR GLN THR GLY GLU ALA ASN SEQRES 3 A 490 ARG GLY TRP THR GLY GLN GLU SER LEU SER ASP SER ASP SEQRES 4 A 490 PRO GLU MET TRP GLU LEU LEU GLN ARG GLU LYS ASP ARG SEQRES 5 A 490 GLN CYS ARG GLY LEU GLU LEU ILE ALA SER GLU ASN PHE SEQRES 6 A 490 CYS SER ARG ALA ALA LEU GLU ALA LEU GLY SER CYS LEU SEQRES 7 A 490 ASN ASN LYS TYR SER GLU GLY TYR PRO GLY LYS ARG TYR SEQRES 8 A 490 TYR GLY GLY ALA GLU VAL VAL ASP GLU ILE GLU LEU LEU SEQRES 9 A 490 CYS GLN ARG ARG ALA LEU GLU ALA PHE ASP LEU ASP PRO SEQRES 10 A 490 ALA GLN TRP GLY VAL ASN VAL GLN PRO TYR SER GLY SER SEQRES 11 A 490 PRO ALA ASN LEU ALA VAL TYR THR ALA LEU LEU GLN PRO SEQRES 12 A 490 HIS ASP ARG ILE MET GLY LEU ASP LEU PRO ASP GLY GLY SEQRES 13 A 490 HIS LEU THR HIS GLY TYR MET SER ASP VAL LYS ARG ILE SEQRES 14 A 490 SER ALA THR SER ILE PHE PHE GLU SER MET PRO TYR LYS SEQRES 15 A 490 LEU ASN PRO LYS THR GLY LEU ILE ASP TYR ASN GLN LEU SEQRES 16 A 490 ALA LEU THR ALA ARG LEU PHE ARG PRO ARG LEU ILE ILE SEQRES 17 A 490 ALA GLY THR SER ALA TYR ALA ARG LEU ILE ASP TYR ALA SEQRES 18 A 490 ARG MET ARG GLU VAL CYS ASP GLU VAL LYS ALA HIS LEU SEQRES 19 A 490 LEU ALA ASP MET ALA HIS ILE SER GLY LEU VAL ALA ALA SEQRES 20 A 490 LYS VAL ILE PRO SER PRO PHE LYS HIS ALA ASP ILE VAL SEQRES 21 A 490 THR THR THR THR HIS LYS THR LEU ARG GLY ALA ARG SER SEQRES 22 A 490 GLY LEU ILE PHE TYR ARG LYS GLY VAL LYS ALA VAL ASP SEQRES 23 A 490 PRO LYS THR GLY ARG GLU ILE PRO TYR THR PHE GLU ASP SEQRES 24 A 490 ARG ILE ASN PHE ALA VAL PHE PRO SER LEU GLN GLY GLY SEQRES 25 A 490 PRO HIS ASN HIS ALA ILE ALA ALA VAL ALA VAL ALA LEU SEQRES 26 A 490 LYS GLN ALA CYS THR PRO MET PHE ARG GLU TYR SER LEU SEQRES 27 A 490 GLN VAL LEU LYS ASN ALA ARG ALA MET ALA ASP ALA LEU SEQRES 28 A 490 LEU GLU ARG GLY TYR SER LEU VAL SER GLY GLY THR ASP SEQRES 29 A 490 ASN HIS LEU VAL LEU VAL ASP LEU ARG PRO LYS GLY LEU SEQRES 30 A 490 ASP GLY ALA ARG ALA GLU ARG VAL LEU GLU LEU VAL SER SEQRES 31 A 490 ILE THR ALA ASN LYS ASN THR CYS PRO GLY ASP ARG SER SEQRES 32 A 490 ALA ILE THR PRO GLY GLY LEU ARG LEU GLY ALA PRO ALA SEQRES 33 A 490 LEU THR SER ARG GLN PHE ARG GLU ASP ASP PHE ARG ARG SEQRES 34 A 490 VAL VAL ASP PHE ILE ASP GLU GLY VAL ASN ILE GLY LEU SEQRES 35 A 490 GLU VAL LYS SER LYS THR ALA LYS LEU GLN ASP PHE LYS SEQRES 36 A 490 SER PHE LEU LEU LYS ASP SER GLU THR SER GLN ARG LEU SEQRES 37 A 490 ALA ASN LEU ARG GLN ARG VAL GLU GLN PHE ALA ARG ALA SEQRES 38 A 490 PHE PRO MET PRO GLY PHE ASP GLU HIS FORMUL 2 HOH *211(H2 O) HELIX 1 1 SER A 32 ASP A 37 1 6 HELIX 2 2 ASP A 37 GLY A 54 1 18 HELIX 3 3 SER A 65 GLY A 73 1 9 HELIX 4 4 SER A 74 ASN A 78 5 5 HELIX 5 5 GLU A 94 PHE A 111 1 18 HELIX 6 6 SER A 126 LEU A 139 1 14 HELIX 7 7 ASP A 189 ARG A 201 1 13 HELIX 8 8 ASP A 217 LYS A 229 1 13 HELIX 9 9 ILE A 239 ALA A 245 1 7 HELIX 10 10 SER A 250 HIS A 254 5 5 HELIX 11 11 PHE A 295 PHE A 304 1 10 HELIX 12 12 HIS A 312 THR A 328 1 17 HELIX 13 13 THR A 328 ARG A 352 1 25 HELIX 14 14 SER A 358 GLY A 360 5 3 HELIX 15 15 ARG A 371 GLY A 374 5 4 HELIX 16 16 ASP A 376 VAL A 387 1 12 HELIX 17 17 ALA A 412 ARG A 418 1 7 HELIX 18 18 ARG A 421 LYS A 445 1 25 HELIX 19 19 LYS A 448 ASP A 459 1 12 HELIX 20 20 ASP A 459 ARG A 478 1 20 SHEET 1 A 2 LEU A 55 GLU A 56 0 SHEET 2 A 2 ILE A 389 THR A 390 1 O THR A 390 N LEU A 55 SHEET 1 B 6 TRP A 118 ASN A 121 0 SHEET 2 B 6 GLY A 272 ARG A 277 -1 O ILE A 274 N ASN A 121 SHEET 3 B 6 ILE A 257 THR A 261 -1 N VAL A 258 O PHE A 275 SHEET 4 B 6 HIS A 231 ASP A 235 1 N ALA A 234 O ILE A 257 SHEET 5 B 6 LEU A 204 ALA A 207 1 N ALA A 207 O LEU A 233 SHEET 6 B 6 ILE A 145 MET A 146 1 N MET A 146 O ILE A 206 SHEET 1 C 2 VAL A 280 VAL A 283 0 SHEET 2 C 2 GLU A 290 PRO A 292 -1 O ILE A 291 N ALA A 282 SHEET 1 D 4 SER A 355 LEU A 356 0 SHEET 2 D 4 LEU A 365 ASP A 369 -1 O ASP A 369 N SER A 355 SHEET 3 D 4 GLY A 407 GLY A 411 -1 O LEU A 408 N VAL A 368 SHEET 4 D 4 ASN A 392 ASN A 394 -1 N ASN A 392 O ARG A 409 CISPEP 1 PHE A 304 PRO A 305 0 4.53 CRYST1 95.034 75.029 75.199 90.00 108.77 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010523 0.000000 0.003576 0.00000 SCALE2 0.000000 0.013328 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014045 0.00000