HEADER TRANSFERASE 14-SEP-10 3OU6 TITLE DHPI-SAM COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAM-DEPENDENT METHYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES LURIDUS; SOURCE 3 ORGANISM_TAXID: 67320; SOURCE 4 GENE: DHPI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-28 KEYWDS O-METHYLTRANSFERASE, SAM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.BAE,S.K.NAIR REVDAT 2 21-FEB-24 3OU6 1 REMARK REVDAT 1 27-OCT-10 3OU6 0 JRNL AUTH J.H.LEE,B.BAE,M.KUEMIN,B.T.CIRCELLO,W.W.METCALF,S.K.NAIR, JRNL AUTH 2 W.A.VAN DER DONK JRNL TITL CHARACTERIZATION AND STRUCTURE OF DHPI, A PHOSPHONATE JRNL TITL 2 O-METHYLTRANSFERASE INVOLVED IN DEHYDROPHOS BIOSYNTHESIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 17557 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20876132 JRNL DOI 10.1073/PNAS.1006848107 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0056 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 57936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3082 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4167 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 234 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6749 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 128 REMARK 3 SOLVENT ATOMS : 492 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.35000 REMARK 3 B22 (A**2) : 1.35000 REMARK 3 B33 (A**2) : -2.02000 REMARK 3 B12 (A**2) : 0.67000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.341 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7055 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9608 ; 1.429 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 841 ; 6.281 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 379 ;32.420 ;22.427 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1039 ;15.695 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 84 ;16.242 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1012 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5590 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4221 ; 0.738 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6750 ; 1.419 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2834 ; 2.174 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2858 ; 3.566 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3OU6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061577. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60586 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 18.30 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.40 REMARK 200 R MERGE FOR SHELL (I) : 0.45900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULPHATE, 100 MM TRIS REMARK 280 -HCL PH=8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 273K, PH REMARK 280 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.02533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 112.05067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.03800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 140.06333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.01267 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.02533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 112.05067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 140.06333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 84.03800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.01267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLY A 216 REMARK 465 PRO A 217 REMARK 465 ARG A 218 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 GLY B 216 REMARK 465 PRO B 217 REMARK 465 ARG B 218 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 THR C 3 REMARK 465 SER C 4 REMARK 465 HIS C 5 REMARK 465 GLY C 6 REMARK 465 PRO C 215 REMARK 465 GLY C 216 REMARK 465 PRO C 217 REMARK 465 ARG C 218 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 GLY D 216 REMARK 465 PRO D 217 REMARK 465 ARG D 218 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SD MET C 30 O HOH C 503 2.00 REMARK 500 OXT SAM C 300 O HOH C 496 2.02 REMARK 500 C ARG C 214 O HOH C 457 2.03 REMARK 500 OD2 ASP B 172 NH1 ARG B 174 2.04 REMARK 500 OXT SAM D 300 O HOH D 497 2.15 REMARK 500 OXT SAM A 300 O HOH A 504 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 283 O HOH C 283 10554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 209 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 LEU D 209 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 26 -152.69 63.31 REMARK 500 GLU A 161 79.91 -113.71 REMARK 500 PHE B 26 -164.69 53.92 REMARK 500 PHE C 26 -161.41 69.60 REMARK 500 TYR C 29 -0.17 68.54 REMARK 500 THR D 25 -48.68 -131.54 REMARK 500 PHE D 26 -170.99 67.73 REMARK 500 ARG D 106 -169.99 -113.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM C 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM D 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OU2 RELATED DB: PDB REMARK 900 DHPI-SAH COMPLEX STRUCTURE REMARK 900 RELATED ID: 3OU7 RELATED DB: PDB REMARK 900 DHPI-SAM-HEP COMPLEX DBREF 3OU6 A 1 218 UNP D7PC21 D7PC21_9ACTO 1 218 DBREF 3OU6 B 1 218 UNP D7PC21 D7PC21_9ACTO 1 218 DBREF 3OU6 C 1 218 UNP D7PC21 D7PC21_9ACTO 1 218 DBREF 3OU6 D 1 218 UNP D7PC21 D7PC21_9ACTO 1 218 SEQRES 1 A 218 MET THR THR SER HIS GLY LEU ILE GLU SER GLN LEU SER SEQRES 2 A 218 TYR TYR ARG ALA ARG ALA SER GLU TYR ASP ALA THR PHE SEQRES 3 A 218 VAL PRO TYR MET ASP SER ALA ALA PRO ALA ALA LEU GLU SEQRES 4 A 218 ARG LEU ARG ALA GLY ASN ILE ARG GLY ASP VAL LEU GLU SEQRES 5 A 218 LEU ALA SER GLY THR GLY TYR TRP THR ARG HIS LEU SER SEQRES 6 A 218 GLY LEU ALA ASP ARG VAL THR ALA LEU ASP GLY SER ALA SEQRES 7 A 218 GLU MET ILE ALA GLU ALA GLY ARG HIS GLY LEU ASP ASN SEQRES 8 A 218 VAL GLU PHE ARG GLN GLN ASP LEU PHE ASP TRP THR PRO SEQRES 9 A 218 ASP ARG GLN TRP ASP ALA VAL PHE PHE ALA HIS TRP LEU SEQRES 10 A 218 ALA HIS VAL PRO ASP ASP ARG PHE GLU ALA PHE TRP GLU SEQRES 11 A 218 SER VAL ARG SER ALA VAL ALA PRO GLY GLY VAL VAL GLU SEQRES 12 A 218 PHE VAL ASP VAL THR ASP HIS GLU ARG ARG LEU GLU GLN SEQRES 13 A 218 GLN ASP ASP SER GLU PRO GLU VAL ALA VAL ARG ARG THR SEQRES 14 A 218 LEU GLN ASP GLY ARG SER PHE ARG ILE VAL LYS VAL PHE SEQRES 15 A 218 ARG SER PRO ALA GLU LEU THR GLU ARG LEU THR ALA LEU SEQRES 16 A 218 GLY TRP SER CYS SER VAL ASP GLU VAL HIS PRO GLY PHE SEQRES 17 A 218 LEU TYR ALA THR CYS ARG PRO GLY PRO ARG SEQRES 1 B 218 MET THR THR SER HIS GLY LEU ILE GLU SER GLN LEU SER SEQRES 2 B 218 TYR TYR ARG ALA ARG ALA SER GLU TYR ASP ALA THR PHE SEQRES 3 B 218 VAL PRO TYR MET ASP SER ALA ALA PRO ALA ALA LEU GLU SEQRES 4 B 218 ARG LEU ARG ALA GLY ASN ILE ARG GLY ASP VAL LEU GLU SEQRES 5 B 218 LEU ALA SER GLY THR GLY TYR TRP THR ARG HIS LEU SER SEQRES 6 B 218 GLY LEU ALA ASP ARG VAL THR ALA LEU ASP GLY SER ALA SEQRES 7 B 218 GLU MET ILE ALA GLU ALA GLY ARG HIS GLY LEU ASP ASN SEQRES 8 B 218 VAL GLU PHE ARG GLN GLN ASP LEU PHE ASP TRP THR PRO SEQRES 9 B 218 ASP ARG GLN TRP ASP ALA VAL PHE PHE ALA HIS TRP LEU SEQRES 10 B 218 ALA HIS VAL PRO ASP ASP ARG PHE GLU ALA PHE TRP GLU SEQRES 11 B 218 SER VAL ARG SER ALA VAL ALA PRO GLY GLY VAL VAL GLU SEQRES 12 B 218 PHE VAL ASP VAL THR ASP HIS GLU ARG ARG LEU GLU GLN SEQRES 13 B 218 GLN ASP ASP SER GLU PRO GLU VAL ALA VAL ARG ARG THR SEQRES 14 B 218 LEU GLN ASP GLY ARG SER PHE ARG ILE VAL LYS VAL PHE SEQRES 15 B 218 ARG SER PRO ALA GLU LEU THR GLU ARG LEU THR ALA LEU SEQRES 16 B 218 GLY TRP SER CYS SER VAL ASP GLU VAL HIS PRO GLY PHE SEQRES 17 B 218 LEU TYR ALA THR CYS ARG PRO GLY PRO ARG SEQRES 1 C 218 MET THR THR SER HIS GLY LEU ILE GLU SER GLN LEU SER SEQRES 2 C 218 TYR TYR ARG ALA ARG ALA SER GLU TYR ASP ALA THR PHE SEQRES 3 C 218 VAL PRO TYR MET ASP SER ALA ALA PRO ALA ALA LEU GLU SEQRES 4 C 218 ARG LEU ARG ALA GLY ASN ILE ARG GLY ASP VAL LEU GLU SEQRES 5 C 218 LEU ALA SER GLY THR GLY TYR TRP THR ARG HIS LEU SER SEQRES 6 C 218 GLY LEU ALA ASP ARG VAL THR ALA LEU ASP GLY SER ALA SEQRES 7 C 218 GLU MET ILE ALA GLU ALA GLY ARG HIS GLY LEU ASP ASN SEQRES 8 C 218 VAL GLU PHE ARG GLN GLN ASP LEU PHE ASP TRP THR PRO SEQRES 9 C 218 ASP ARG GLN TRP ASP ALA VAL PHE PHE ALA HIS TRP LEU SEQRES 10 C 218 ALA HIS VAL PRO ASP ASP ARG PHE GLU ALA PHE TRP GLU SEQRES 11 C 218 SER VAL ARG SER ALA VAL ALA PRO GLY GLY VAL VAL GLU SEQRES 12 C 218 PHE VAL ASP VAL THR ASP HIS GLU ARG ARG LEU GLU GLN SEQRES 13 C 218 GLN ASP ASP SER GLU PRO GLU VAL ALA VAL ARG ARG THR SEQRES 14 C 218 LEU GLN ASP GLY ARG SER PHE ARG ILE VAL LYS VAL PHE SEQRES 15 C 218 ARG SER PRO ALA GLU LEU THR GLU ARG LEU THR ALA LEU SEQRES 16 C 218 GLY TRP SER CYS SER VAL ASP GLU VAL HIS PRO GLY PHE SEQRES 17 C 218 LEU TYR ALA THR CYS ARG PRO GLY PRO ARG SEQRES 1 D 218 MET THR THR SER HIS GLY LEU ILE GLU SER GLN LEU SER SEQRES 2 D 218 TYR TYR ARG ALA ARG ALA SER GLU TYR ASP ALA THR PHE SEQRES 3 D 218 VAL PRO TYR MET ASP SER ALA ALA PRO ALA ALA LEU GLU SEQRES 4 D 218 ARG LEU ARG ALA GLY ASN ILE ARG GLY ASP VAL LEU GLU SEQRES 5 D 218 LEU ALA SER GLY THR GLY TYR TRP THR ARG HIS LEU SER SEQRES 6 D 218 GLY LEU ALA ASP ARG VAL THR ALA LEU ASP GLY SER ALA SEQRES 7 D 218 GLU MET ILE ALA GLU ALA GLY ARG HIS GLY LEU ASP ASN SEQRES 8 D 218 VAL GLU PHE ARG GLN GLN ASP LEU PHE ASP TRP THR PRO SEQRES 9 D 218 ASP ARG GLN TRP ASP ALA VAL PHE PHE ALA HIS TRP LEU SEQRES 10 D 218 ALA HIS VAL PRO ASP ASP ARG PHE GLU ALA PHE TRP GLU SEQRES 11 D 218 SER VAL ARG SER ALA VAL ALA PRO GLY GLY VAL VAL GLU SEQRES 12 D 218 PHE VAL ASP VAL THR ASP HIS GLU ARG ARG LEU GLU GLN SEQRES 13 D 218 GLN ASP ASP SER GLU PRO GLU VAL ALA VAL ARG ARG THR SEQRES 14 D 218 LEU GLN ASP GLY ARG SER PHE ARG ILE VAL LYS VAL PHE SEQRES 15 D 218 ARG SER PRO ALA GLU LEU THR GLU ARG LEU THR ALA LEU SEQRES 16 D 218 GLY TRP SER CYS SER VAL ASP GLU VAL HIS PRO GLY PHE SEQRES 17 D 218 LEU TYR ALA THR CYS ARG PRO GLY PRO ARG HET SAM A 300 27 HET SO4 A 301 5 HET SAM B 300 27 HET SO4 B 301 5 HET SAM C 300 27 HET SO4 C 301 5 HET SAM D 300 27 HET SO4 D 301 5 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM SO4 SULFATE ION FORMUL 5 SAM 4(C15 H22 N6 O5 S) FORMUL 6 SO4 4(O4 S 2-) FORMUL 13 HOH *492(H2 O) HELIX 1 1 SER A 4 ALA A 19 1 16 HELIX 2 2 GLU A 21 PHE A 26 1 6 HELIX 3 3 TYR A 29 ARG A 42 1 14 HELIX 4 4 GLY A 58 ALA A 68 1 11 HELIX 5 5 SER A 77 ARG A 86 1 10 HELIX 6 6 TRP A 116 VAL A 120 5 5 HELIX 7 7 PRO A 121 ALA A 135 1 15 HELIX 8 8 ARG A 152 ASP A 158 1 7 HELIX 9 9 SER A 184 LEU A 195 1 12 HELIX 10 10 HIS B 5 ALA B 19 1 15 HELIX 11 11 GLU B 21 PHE B 26 1 6 HELIX 12 12 TYR B 29 ARG B 42 1 14 HELIX 13 13 GLY B 58 ALA B 68 1 11 HELIX 14 14 SER B 77 ARG B 86 1 10 HELIX 15 15 TRP B 116 VAL B 120 5 5 HELIX 16 16 PRO B 121 ASP B 123 5 3 HELIX 17 17 ARG B 124 ALA B 135 1 12 HELIX 18 18 ARG B 152 ASP B 158 1 7 HELIX 19 19 SER B 184 LEU B 195 1 12 HELIX 20 20 LEU C 7 ALA C 19 1 13 HELIX 21 21 GLU C 21 PHE C 26 1 6 HELIX 22 22 TYR C 29 ARG C 42 1 14 HELIX 23 23 GLY C 58 ALA C 68 1 11 HELIX 24 24 SER C 77 GLY C 85 1 9 HELIX 25 25 ARG C 86 GLY C 88 5 3 HELIX 26 26 TRP C 116 VAL C 120 5 5 HELIX 27 27 PRO C 121 ALA C 135 1 15 HELIX 28 28 ARG C 152 ASP C 158 1 7 HELIX 29 29 SER C 184 ALA C 194 1 11 HELIX 30 30 SER D 4 ALA D 19 1 16 HELIX 31 31 SER D 20 THR D 25 5 6 HELIX 32 32 TYR D 29 ARG D 42 1 14 HELIX 33 33 GLY D 58 ALA D 68 1 11 HELIX 34 34 SER D 77 ARG D 86 1 10 HELIX 35 35 TRP D 116 VAL D 120 5 5 HELIX 36 36 PRO D 121 ALA D 135 1 15 HELIX 37 37 ARG D 152 ASP D 158 1 7 HELIX 38 38 SER D 184 LEU D 195 1 12 SHEET 1 A 7 VAL A 92 GLN A 96 0 SHEET 2 A 7 ARG A 70 ASP A 75 1 N ALA A 73 O GLU A 93 SHEET 3 A 7 ASP A 49 LEU A 53 1 N GLU A 52 O THR A 72 SHEET 4 A 7 TRP A 108 ALA A 114 1 O ALA A 110 N LEU A 51 SHEET 5 A 7 VAL A 136 VAL A 147 1 O ALA A 137 N TRP A 108 SHEET 6 A 7 PHE A 208 ARG A 214 -1 O CYS A 213 N VAL A 142 SHEET 7 A 7 SER A 198 HIS A 205 -1 N ASP A 202 O TYR A 210 SHEET 1 B 2 ALA A 165 THR A 169 0 SHEET 2 B 2 SER A 175 VAL A 179 -1 O PHE A 176 N ARG A 168 SHEET 1 C 7 VAL B 92 GLN B 96 0 SHEET 2 C 7 ARG B 70 ASP B 75 1 N ALA B 73 O GLU B 93 SHEET 3 C 7 ASP B 49 LEU B 53 1 N GLU B 52 O THR B 72 SHEET 4 C 7 TRP B 108 ALA B 114 1 O PHE B 112 N LEU B 51 SHEET 5 C 7 VAL B 136 VAL B 147 1 O ALA B 137 N TRP B 108 SHEET 6 C 7 PHE B 208 ARG B 214 -1 O LEU B 209 N ASP B 146 SHEET 7 C 7 SER B 198 HIS B 205 -1 N HIS B 205 O PHE B 208 SHEET 1 D 2 ALA B 165 THR B 169 0 SHEET 2 D 2 SER B 175 VAL B 179 -1 O PHE B 176 N ARG B 168 SHEET 1 E 7 VAL C 92 GLN C 96 0 SHEET 2 E 7 ARG C 70 ASP C 75 1 N VAL C 71 O GLU C 93 SHEET 3 E 7 ASP C 49 LEU C 53 1 N GLU C 52 O THR C 72 SHEET 4 E 7 TRP C 108 ALA C 114 1 O PHE C 112 N LEU C 53 SHEET 5 E 7 VAL C 136 VAL C 147 1 O GLU C 143 N VAL C 111 SHEET 6 E 7 PHE C 208 ARG C 214 -1 O CYS C 213 N VAL C 142 SHEET 7 E 7 SER C 198 HIS C 205 -1 N HIS C 205 O PHE C 208 SHEET 1 F 2 ALA C 165 THR C 169 0 SHEET 2 F 2 SER C 175 VAL C 179 -1 O PHE C 176 N ARG C 168 SHEET 1 G 7 VAL D 92 GLN D 96 0 SHEET 2 G 7 ARG D 70 ASP D 75 1 N ALA D 73 O GLU D 93 SHEET 3 G 7 ASP D 49 LEU D 53 1 N GLU D 52 O THR D 72 SHEET 4 G 7 TRP D 108 ALA D 114 1 O PHE D 112 N LEU D 53 SHEET 5 G 7 VAL D 136 VAL D 147 1 O GLU D 143 N VAL D 111 SHEET 6 G 7 PHE D 208 ARG D 214 -1 O CYS D 213 N VAL D 142 SHEET 7 G 7 SER D 198 HIS D 205 -1 N HIS D 205 O PHE D 208 SHEET 1 H 2 ALA D 165 THR D 169 0 SHEET 2 H 2 SER D 175 VAL D 179 -1 O PHE D 176 N ARG D 168 SITE 1 AC1 23 TYR A 15 TYR A 22 ALA A 54 SER A 55 SITE 2 AC1 23 GLY A 56 THR A 57 TRP A 60 ASP A 75 SITE 3 AC1 23 GLY A 76 SER A 77 MET A 80 GLN A 97 SITE 4 AC1 23 ASP A 98 LEU A 99 PHE A 100 ALA A 114 SITE 5 AC1 23 TRP A 116 HOH A 222 HOH A 223 HOH A 226 SITE 6 AC1 23 HOH A 272 SO4 A 301 HOH A 504 SITE 1 AC2 8 TYR A 15 ARG A 18 HIS A 119 ARG A 168 SITE 2 AC2 8 LYS A 180 HOH A 220 HOH A 291 SAM A 300 SITE 1 AC3 19 TYR B 15 TYR B 22 ALA B 54 SER B 55 SITE 2 AC3 19 GLY B 56 TRP B 60 ASP B 75 GLY B 76 SITE 3 AC3 19 GLN B 97 ASP B 98 LEU B 99 PHE B 100 SITE 4 AC3 19 ALA B 114 HIS B 115 TRP B 116 HOH B 223 SITE 5 AC3 19 HOH B 225 HOH B 245 SO4 B 301 SITE 1 AC4 8 TYR B 15 ARG B 18 VAL B 27 HIS B 119 SITE 2 AC4 8 ARG B 168 LYS B 180 HOH B 285 SAM B 300 SITE 1 AC5 24 LEU C 12 TYR C 15 TYR C 22 ALA C 54 SITE 2 AC5 24 SER C 55 GLY C 56 TRP C 60 ASP C 75 SITE 3 AC5 24 GLY C 76 SER C 77 MET C 80 GLN C 97 SITE 4 AC5 24 ASP C 98 LEU C 99 PHE C 100 ALA C 114 SITE 5 AC5 24 HIS C 115 TRP C 116 HOH C 220 HOH C 233 SITE 6 AC5 24 HOH C 245 HOH C 270 SO4 C 301 HOH C 496 SITE 1 AC6 8 TYR C 15 ARG C 18 HIS C 119 ARG C 168 SITE 2 AC6 8 LYS C 180 HOH C 259 HOH C 290 SAM C 300 SITE 1 AC7 20 TYR D 15 TYR D 22 ALA D 54 SER D 55 SITE 2 AC7 20 GLY D 56 TRP D 60 ASP D 75 GLY D 76 SITE 3 AC7 20 SER D 77 MET D 80 GLN D 97 ASP D 98 SITE 4 AC7 20 LEU D 99 PHE D 100 ALA D 114 HIS D 115 SITE 5 AC7 20 TRP D 116 HOH D 252 HOH D 341 HOH D 497 SITE 1 AC8 7 HOH A 267 TYR D 15 ARG D 18 HIS D 119 SITE 2 AC8 7 ARG D 168 LYS D 180 HOH D 250 CRYST1 166.428 166.428 168.076 90.00 90.00 120.00 P 61 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006009 0.003469 0.000000 0.00000 SCALE2 0.000000 0.006938 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005950 0.00000