HEADER ISOMERASE 17-SEP-10 3OVQ TITLE CRYSTAL STRUCTURE OF HRPE AND D-RIBULOSE-5-PHOSPATE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBULOSE-PHOSPHATE 3-EPIMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: D-RIBULOSE-5-PHOSPHATE 3-EPIMERASE; COMPND 5 EC: 5.1.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RPE, HUSSY-17; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS D-RIBULOSE-5-PHOSPHATE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.G.LIANG,S.Y.OUYANG,N.SHAW,A.JOACHIMIAK,R.G.ZHANG,Z.J.LIU REVDAT 4 16-OCT-24 3OVQ 1 REMARK REVDAT 3 01-NOV-23 3OVQ 1 REMARK LINK REVDAT 2 21-DEC-16 3OVQ 1 TITLE VERSN REVDAT 1 09-MAR-11 3OVQ 0 JRNL AUTH W.G.LIANG,S.Y.OUYANG,N.SHAW,A.JOACHIMIAK,R.G.ZHANG,Z.J.LIU JRNL TITL CONVERSION OF D-RIBULOSE 5-PHOSPHATE TO D-XYLULOSE JRNL TITL 2 5-PHOSPHATE: NEW INSIGHTS FROM STRUCTURAL AND BIOCHEMICAL JRNL TITL 3 STUDIES ON HUMAN RPE JRNL REF FASEB J. V. 25 497 2011 JRNL REFN ISSN 0892-6638 JRNL PMID 20923965 JRNL DOI 10.1096/FJ.10-171207 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.120 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 26067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1324 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.9414 - 4.1532 1.00 2846 170 0.1509 0.1809 REMARK 3 2 4.1532 - 3.2987 1.00 2780 147 0.1341 0.1742 REMARK 3 3 3.2987 - 2.8823 1.00 2743 170 0.1642 0.2103 REMARK 3 4 2.8823 - 2.6190 1.00 2750 162 0.1546 0.1975 REMARK 3 5 2.6190 - 2.4315 1.00 2737 137 0.1430 0.2074 REMARK 3 6 2.4315 - 2.2882 0.99 2718 139 0.1348 0.1768 REMARK 3 7 2.2882 - 2.1737 0.99 2742 145 0.1290 0.1804 REMARK 3 8 2.1737 - 2.0791 0.99 2752 120 0.1244 0.1982 REMARK 3 9 2.0791 - 1.9991 0.98 2675 134 0.1255 0.1953 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 43.23 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.15340 REMARK 3 B22 (A**2) : 5.25550 REMARK 3 B33 (A**2) : -3.10210 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.73220 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3832 REMARK 3 ANGLE : 1.033 5213 REMARK 3 CHIRALITY : 0.070 559 REMARK 3 PLANARITY : 0.005 695 REMARK 3 DIHEDRAL : 16.261 1522 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 4:14) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0982 8.3857 26.2648 REMARK 3 T TENSOR REMARK 3 T11: 0.2098 T22: 0.3462 REMARK 3 T33: 0.2564 T12: -0.0724 REMARK 3 T13: 0.0395 T23: -0.0539 REMARK 3 L TENSOR REMARK 3 L11: 0.4362 L22: 0.7918 REMARK 3 L33: 0.0148 L12: -0.3711 REMARK 3 L13: 0.0099 L23: -0.1316 REMARK 3 S TENSOR REMARK 3 S11: 0.3585 S12: 0.2965 S13: 0.4287 REMARK 3 S21: -0.3498 S22: -0.1361 S23: 0.3462 REMARK 3 S31: 0.1723 S32: -0.1703 S33: 0.0048 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 15:52) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4166 4.1793 18.0420 REMARK 3 T TENSOR REMARK 3 T11: 0.1998 T22: 0.2282 REMARK 3 T33: 0.2084 T12: -0.0262 REMARK 3 T13: 0.0007 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.5724 L22: 0.4228 REMARK 3 L33: 1.0119 L12: 0.2121 REMARK 3 L13: -0.7100 L23: -0.6426 REMARK 3 S TENSOR REMARK 3 S11: 0.0426 S12: -0.0869 S13: -0.1117 REMARK 3 S21: -0.0009 S22: -0.0109 S23: -0.0803 REMARK 3 S31: -0.0956 S32: 0.1515 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 53:68) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3060 -3.1390 21.4499 REMARK 3 T TENSOR REMARK 3 T11: 0.2327 T22: 0.3288 REMARK 3 T33: 0.3398 T12: 0.0113 REMARK 3 T13: -0.0148 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 0.1111 L22: 0.3700 REMARK 3 L33: 0.2188 L12: -0.0156 REMARK 3 L13: -0.0347 L23: -0.2881 REMARK 3 S TENSOR REMARK 3 S11: -0.0827 S12: -0.1130 S13: -0.3484 REMARK 3 S21: -0.0378 S22: -0.0322 S23: -0.3186 REMARK 3 S31: -0.0034 S32: 0.3867 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 69:125) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6227 -7.7689 24.8536 REMARK 3 T TENSOR REMARK 3 T11: 0.2193 T22: 0.1432 REMARK 3 T33: 0.2029 T12: -0.0175 REMARK 3 T13: -0.0010 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 0.6965 L22: 0.3706 REMARK 3 L33: 2.0477 L12: 0.1996 REMARK 3 L13: 0.1039 L23: -0.3467 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: -0.0478 S13: -0.3349 REMARK 3 S21: 0.0094 S22: -0.0080 S23: -0.1085 REMARK 3 S31: 0.4122 S32: -0.0058 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 126:197) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2911 6.6891 33.3916 REMARK 3 T TENSOR REMARK 3 T11: 0.2701 T22: 0.2216 REMARK 3 T33: 0.1966 T12: -0.0227 REMARK 3 T13: 0.0120 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.9864 L22: 0.6295 REMARK 3 L33: 1.9254 L12: -0.1381 REMARK 3 L13: -0.8453 L23: 0.5690 REMARK 3 S TENSOR REMARK 3 S11: 0.1148 S12: -0.3495 S13: 0.1711 REMARK 3 S21: 0.2654 S22: -0.0378 S23: 0.0115 REMARK 3 S31: -0.3125 S32: 0.0139 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 198:208) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6345 17.7353 22.6764 REMARK 3 T TENSOR REMARK 3 T11: 0.5879 T22: 0.4211 REMARK 3 T33: 0.3761 T12: -0.2441 REMARK 3 T13: 0.1487 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.0436 L22: 0.3226 REMARK 3 L33: 0.1148 L12: -0.1190 REMARK 3 L13: -0.0048 L23: 0.0090 REMARK 3 S TENSOR REMARK 3 S11: 0.0934 S12: 0.5232 S13: 0.7112 REMARK 3 S21: -0.4214 S22: 0.4214 S23: -0.6951 REMARK 3 S31: -1.2016 S32: 0.8700 S33: 0.0130 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 209:222) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1595 14.7845 37.9134 REMARK 3 T TENSOR REMARK 3 T11: 0.5153 T22: 0.8159 REMARK 3 T33: 0.3985 T12: -0.0861 REMARK 3 T13: -0.0438 T23: -0.1445 REMARK 3 L TENSOR REMARK 3 L11: -0.0155 L22: 0.0256 REMARK 3 L33: 0.0148 L12: -0.0158 REMARK 3 L13: -0.0006 L23: -0.0364 REMARK 3 S TENSOR REMARK 3 S11: -0.0238 S12: -1.3308 S13: -0.0586 REMARK 3 S21: 0.7836 S22: 0.0898 S23: -0.2898 REMARK 3 S31: 0.0148 S32: -0.5123 S33: -0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 5:11) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3509 -2.4559 -8.2385 REMARK 3 T TENSOR REMARK 3 T11: 0.1807 T22: 0.2693 REMARK 3 T33: 0.1529 T12: -0.0014 REMARK 3 T13: -0.0162 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.0960 L22: 0.0110 REMARK 3 L33: 2.1580 L12: -0.0231 REMARK 3 L13: -0.2654 L23: -0.1235 REMARK 3 S TENSOR REMARK 3 S11: -0.3298 S12: -0.3503 S13: -0.1403 REMARK 3 S21: 0.2086 S22: -0.0299 S23: -0.4303 REMARK 3 S31: 0.6058 S32: 0.1350 S33: -0.0227 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 12:31) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0111 1.7592 1.9138 REMARK 3 T TENSOR REMARK 3 T11: 0.2113 T22: 0.2960 REMARK 3 T33: 0.2690 T12: -0.0494 REMARK 3 T13: 0.0067 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.1173 L22: 0.0619 REMARK 3 L33: 0.1544 L12: -0.0623 REMARK 3 L13: 0.0829 L23: -0.1008 REMARK 3 S TENSOR REMARK 3 S11: 0.1165 S12: -0.0018 S13: -0.2810 REMARK 3 S21: -0.0029 S22: -0.1487 S23: -0.1710 REMARK 3 S31: 0.1504 S32: 0.1986 S33: 0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 32:75) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2979 2.5207 1.4561 REMARK 3 T TENSOR REMARK 3 T11: 0.1322 T22: 0.1542 REMARK 3 T33: 0.1974 T12: -0.0057 REMARK 3 T13: 0.0067 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.2690 L22: 0.7762 REMARK 3 L33: 1.3900 L12: -0.0051 REMARK 3 L13: 0.4968 L23: 0.6867 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: 0.0408 S13: 0.1544 REMARK 3 S21: -0.0757 S22: 0.0728 S23: -0.0165 REMARK 3 S31: -0.0723 S32: 0.1083 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 76:143) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3237 -1.5104 -7.3063 REMARK 3 T TENSOR REMARK 3 T11: 0.1267 T22: 0.1496 REMARK 3 T33: 0.1550 T12: 0.0106 REMARK 3 T13: -0.0240 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 1.4309 L22: 1.2858 REMARK 3 L33: 1.0390 L12: -0.0769 REMARK 3 L13: 0.0044 L23: -0.2240 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: 0.0970 S13: 0.0874 REMARK 3 S21: -0.1144 S22: 0.0234 S23: 0.1065 REMARK 3 S31: 0.0031 S32: -0.1543 S33: 0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 144:199) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7345 -12.3696 -12.6692 REMARK 3 T TENSOR REMARK 3 T11: 0.2349 T22: 0.2672 REMARK 3 T33: 0.2477 T12: 0.0108 REMARK 3 T13: 0.0096 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.7684 L22: 0.9293 REMARK 3 L33: 0.4920 L12: 0.3674 REMARK 3 L13: -0.0640 L23: 0.6326 REMARK 3 S TENSOR REMARK 3 S11: -0.1092 S12: 0.0584 S13: -0.2493 REMARK 3 S21: -0.0707 S22: 0.1262 S23: -0.2214 REMARK 3 S31: 0.2085 S32: 0.1947 S33: -0.0001 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 200:218) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9658 -4.7137 -10.4066 REMARK 3 T TENSOR REMARK 3 T11: 0.2837 T22: 0.3143 REMARK 3 T33: 0.4003 T12: 0.0411 REMARK 3 T13: 0.0298 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 0.0841 L22: 0.5037 REMARK 3 L33: 0.2002 L12: -0.2037 REMARK 3 L13: -0.0736 L23: -0.0677 REMARK 3 S TENSOR REMARK 3 S11: -0.1418 S12: 0.2191 S13: 0.0466 REMARK 3 S21: -0.0023 S22: -0.0212 S23: -0.3981 REMARK 3 S31: -0.3729 S32: 0.7464 S33: 0.0002 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 219:223) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5941 -8.7485 -25.6814 REMARK 3 T TENSOR REMARK 3 T11: 0.5293 T22: 0.3710 REMARK 3 T33: 0.3105 T12: 0.1737 REMARK 3 T13: -0.1101 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 0.0766 L22: 0.1869 REMARK 3 L33: 0.1154 L12: -0.1233 REMARK 3 L13: -0.0572 L23: 0.1088 REMARK 3 S TENSOR REMARK 3 S11: 0.3032 S12: 0.0179 S13: 0.5785 REMARK 3 S21: -0.5044 S22: -0.0590 S23: -0.7317 REMARK 3 S31: -0.4716 S32: 0.3192 S33: 0.0080 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3OVQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35837 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 3OVP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CHORIDE, 0.1M BIS-TRIS, REMARK 280 25%(W/V) POLYETHYLENE GLYCOL 3350, PH 5.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.76750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 LYS A 223 REMARK 465 ARG A 224 REMARK 465 SER A 225 REMARK 465 LEU A 226 REMARK 465 ASP A 227 REMARK 465 ARG A 228 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 GLY B 4 REMARK 465 ARG B 224 REMARK 465 SER B 225 REMARK 465 LEU B 226 REMARK 465 ASP B 227 REMARK 465 ARG B 228 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 133 CG OD1 ND2 REMARK 470 ALA A 221 CB REMARK 470 GLN A 222 CB CG CD OE1 NE2 REMARK 470 GLU B 99 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 CYS A 217 CA CB SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 48 -80.33 -107.20 REMARK 500 PRO B 45 48.24 -82.56 REMARK 500 THR B 48 -81.23 -108.27 REMARK 500 ASN B 100 87.99 -166.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 XPE A 231 REMARK 610 XPE A 232 REMARK 610 XPE A 233 REMARK 610 XPE A 234 REMARK 610 XPE B 231 REMARK 610 XPE B 232 REMARK 610 XPE B 233 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 229 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 35 NE2 REMARK 620 2 ASP A 37 OD1 90.9 REMARK 620 3 HIS A 70 ND1 97.6 88.2 REMARK 620 4 ASP A 175 OD2 94.7 174.3 92.4 REMARK 620 5 5RP A 230 O4 172.4 88.5 90.0 85.8 REMARK 620 6 5RP A 230 O13 99.1 95.8 162.7 82.0 73.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 229 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 35 NE2 REMARK 620 2 ASP B 37 OD1 92.2 REMARK 620 3 HIS B 70 ND1 96.9 95.3 REMARK 620 4 ASP B 175 OD2 90.0 176.7 86.9 REMARK 620 5 5RP B 230 O4 170.5 92.6 90.8 84.9 REMARK 620 6 5RP B 230 O13 98.8 92.7 162.1 84.5 72.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5RP A 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XPE A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XPE A 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XPE A 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XPE A 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5RP B 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XPE B 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XPE B 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XPE B 233 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OVP RELATED DB: PDB REMARK 900 RELATED ID: 3OVR RELATED DB: PDB DBREF 3OVQ A 1 228 UNP Q96AT9 RPE_HUMAN 1 228 DBREF 3OVQ B 1 228 UNP Q96AT9 RPE_HUMAN 1 228 SEQRES 1 A 228 MET ALA SER GLY CYS LYS ILE GLY PRO SER ILE LEU ASN SEQRES 2 A 228 SER ASP LEU ALA ASN LEU GLY ALA GLU CYS LEU ARG MET SEQRES 3 A 228 LEU ASP SER GLY ALA ASP TYR LEU HIS LEU ASP VAL MET SEQRES 4 A 228 ASP GLY HIS PHE VAL PRO ASN ILE THR PHE GLY HIS PRO SEQRES 5 A 228 VAL VAL GLU SER LEU ARG LYS GLN LEU GLY GLN ASP PRO SEQRES 6 A 228 PHE PHE ASP MET HIS MET MET VAL SER LYS PRO GLU GLN SEQRES 7 A 228 TRP VAL LYS PRO MET ALA VAL ALA GLY ALA ASN GLN TYR SEQRES 8 A 228 THR PHE HIS LEU GLU ALA THR GLU ASN PRO GLY ALA LEU SEQRES 9 A 228 ILE LYS ASP ILE ARG GLU ASN GLY MET LYS VAL GLY LEU SEQRES 10 A 228 ALA ILE LYS PRO GLY THR SER VAL GLU TYR LEU ALA PRO SEQRES 11 A 228 TRP ALA ASN GLN ILE ASP MET ALA LEU VAL MET THR VAL SEQRES 12 A 228 GLU PRO GLY PHE GLY GLY GLN LYS PHE MET GLU ASP MET SEQRES 13 A 228 MET PRO LYS VAL HIS TRP LEU ARG THR GLN PHE PRO SER SEQRES 14 A 228 LEU ASP ILE GLU VAL ASP GLY GLY VAL GLY PRO ASP THR SEQRES 15 A 228 VAL HIS LYS CYS ALA GLU ALA GLY ALA ASN MET ILE VAL SEQRES 16 A 228 SER GLY SER ALA ILE MET ARG SER GLU ASP PRO ARG SER SEQRES 17 A 228 VAL ILE ASN LEU LEU ARG ASN VAL CYS SER GLU ALA ALA SEQRES 18 A 228 GLN LYS ARG SER LEU ASP ARG SEQRES 1 B 228 MET ALA SER GLY CYS LYS ILE GLY PRO SER ILE LEU ASN SEQRES 2 B 228 SER ASP LEU ALA ASN LEU GLY ALA GLU CYS LEU ARG MET SEQRES 3 B 228 LEU ASP SER GLY ALA ASP TYR LEU HIS LEU ASP VAL MET SEQRES 4 B 228 ASP GLY HIS PHE VAL PRO ASN ILE THR PHE GLY HIS PRO SEQRES 5 B 228 VAL VAL GLU SER LEU ARG LYS GLN LEU GLY GLN ASP PRO SEQRES 6 B 228 PHE PHE ASP MET HIS MET MET VAL SER LYS PRO GLU GLN SEQRES 7 B 228 TRP VAL LYS PRO MET ALA VAL ALA GLY ALA ASN GLN TYR SEQRES 8 B 228 THR PHE HIS LEU GLU ALA THR GLU ASN PRO GLY ALA LEU SEQRES 9 B 228 ILE LYS ASP ILE ARG GLU ASN GLY MET LYS VAL GLY LEU SEQRES 10 B 228 ALA ILE LYS PRO GLY THR SER VAL GLU TYR LEU ALA PRO SEQRES 11 B 228 TRP ALA ASN GLN ILE ASP MET ALA LEU VAL MET THR VAL SEQRES 12 B 228 GLU PRO GLY PHE GLY GLY GLN LYS PHE MET GLU ASP MET SEQRES 13 B 228 MET PRO LYS VAL HIS TRP LEU ARG THR GLN PHE PRO SER SEQRES 14 B 228 LEU ASP ILE GLU VAL ASP GLY GLY VAL GLY PRO ASP THR SEQRES 15 B 228 VAL HIS LYS CYS ALA GLU ALA GLY ALA ASN MET ILE VAL SEQRES 16 B 228 SER GLY SER ALA ILE MET ARG SER GLU ASP PRO ARG SER SEQRES 17 B 228 VAL ILE ASN LEU LEU ARG ASN VAL CYS SER GLU ALA ALA SEQRES 18 B 228 GLN LYS ARG SER LEU ASP ARG HET FE2 A 229 1 HET 5RP A 230 14 HET XPE A 231 9 HET XPE A 232 11 HET XPE A 233 10 HET XPE A 234 11 HET FE2 B 229 1 HET 5RP B 230 14 HET XPE B 231 11 HET XPE B 232 9 HET XPE B 233 8 HETNAM FE2 FE (II) ION HETNAM 5RP RIBULOSE-5-PHOSPHATE HETNAM XPE 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL HETSYN XPE DECAETHYLENE GLYCOL FORMUL 3 FE2 2(FE 2+) FORMUL 4 5RP 2(C5 H11 O8 P) FORMUL 5 XPE 7(C20 H42 O11) FORMUL 14 HOH *154(H2 O) HELIX 1 1 ASP A 15 ALA A 17 5 3 HELIX 2 2 ASN A 18 SER A 29 1 12 HELIX 3 3 GLY A 50 GLY A 62 1 13 HELIX 4 4 LYS A 75 GLY A 87 1 13 HELIX 5 5 GLU A 96 THR A 98 5 3 HELIX 6 6 ASN A 100 ASN A 111 1 12 HELIX 7 7 SER A 124 ILE A 135 5 12 HELIX 8 8 MET A 153 ASP A 155 5 3 HELIX 9 9 MET A 156 PHE A 167 1 12 HELIX 10 10 THR A 182 GLY A 190 1 9 HELIX 11 11 GLY A 197 ARG A 202 1 6 HELIX 12 12 ASP A 205 GLN A 222 1 18 HELIX 13 13 ASP B 15 ALA B 17 5 3 HELIX 14 14 ASN B 18 SER B 29 1 12 HELIX 15 15 GLY B 50 GLY B 62 1 13 HELIX 16 16 LYS B 75 GLN B 78 5 4 HELIX 17 17 TRP B 79 GLY B 87 1 9 HELIX 18 18 ASN B 100 ASN B 111 1 12 HELIX 19 19 SER B 124 ALA B 129 5 6 HELIX 20 20 MET B 153 ASP B 155 5 3 HELIX 21 21 MET B 156 PHE B 167 1 12 HELIX 22 22 THR B 182 GLY B 190 1 9 HELIX 23 23 GLY B 197 ARG B 202 1 6 HELIX 24 24 ASP B 205 GLN B 222 1 18 SHEET 1 A 8 LYS A 6 PRO A 9 0 SHEET 2 A 8 MET A 193 SER A 196 1 O ILE A 194 N GLY A 8 SHEET 3 A 8 ASP A 171 ASP A 175 1 N ILE A 172 O MET A 193 SHEET 4 A 8 MET A 137 MET A 141 1 N ALA A 138 O GLU A 173 SHEET 5 A 8 LYS A 114 ILE A 119 1 N LEU A 117 O LEU A 139 SHEET 6 A 8 GLN A 90 HIS A 94 1 N PHE A 93 O ALA A 118 SHEET 7 A 8 PHE A 67 MET A 72 1 N MET A 69 O THR A 92 SHEET 8 A 8 LEU A 34 MET A 39 1 N LEU A 34 O ASP A 68 SHEET 1 B 8 LYS B 6 PRO B 9 0 SHEET 2 B 8 MET B 193 SER B 196 1 O ILE B 194 N LYS B 6 SHEET 3 B 8 ASP B 171 ASP B 175 1 N ILE B 172 O MET B 193 SHEET 4 B 8 MET B 137 MET B 141 1 N ALA B 138 O GLU B 173 SHEET 5 B 8 LYS B 114 ILE B 119 1 N LEU B 117 O LEU B 139 SHEET 6 B 8 GLN B 90 HIS B 94 1 N PHE B 93 O ALA B 118 SHEET 7 B 8 PHE B 67 MET B 72 1 N MET B 71 O THR B 92 SHEET 8 B 8 LEU B 34 MET B 39 1 N LEU B 34 O ASP B 68 SSBOND 1 CYS A 5 CYS A 217 1555 1555 2.03 SSBOND 2 CYS B 5 CYS B 217 1555 1555 2.04 LINK NE2 HIS A 35 FE FE2 A 229 1555 1555 2.23 LINK OD1 ASP A 37 FE FE2 A 229 1555 1555 2.14 LINK ND1 HIS A 70 FE FE2 A 229 1555 1555 2.27 LINK OD2 ASP A 175 FE FE2 A 229 1555 1555 2.20 LINK FE FE2 A 229 O4 5RP A 230 1555 1555 2.19 LINK FE FE2 A 229 O13 5RP A 230 1555 1555 2.29 LINK NE2 HIS B 35 FE FE2 B 229 1555 1555 2.22 LINK OD1 ASP B 37 FE FE2 B 229 1555 1555 2.06 LINK ND1 HIS B 70 FE FE2 B 229 1555 1555 2.26 LINK OD2 ASP B 175 FE FE2 B 229 1555 1555 2.25 LINK FE FE2 B 229 O4 5RP B 230 1555 1555 2.24 LINK FE FE2 B 229 O13 5RP B 230 1555 1555 2.34 SITE 1 AC1 5 HIS A 35 ASP A 37 HIS A 70 ASP A 175 SITE 2 AC1 5 5RP A 230 SITE 1 AC2 20 SER A 10 HIS A 35 ASP A 37 HIS A 70 SITE 2 AC2 20 MET A 72 PRO A 145 GLY A 146 PHE A 147 SITE 3 AC2 20 GLY A 148 GLY A 149 ASP A 175 GLY A 176 SITE 4 AC2 20 GLY A 177 GLY A 197 SER A 198 FE2 A 229 SITE 5 AC2 20 HOH A 238 HOH A 248 HOH A 251 HOH A 258 SITE 1 AC3 5 LYS A 6 ASP A 32 PHE A 66 ASP A 171 SITE 2 AC3 5 MET A 193 SITE 1 AC4 5 ARG A 58 GLN A 63 PHE A 66 ASN A 89 SITE 2 AC4 5 GLY A 112 SITE 1 AC5 4 PRO A 158 HIS A 161 TRP A 162 GLU A 188 SITE 1 AC6 2 ASN A 100 TRP A 131 SITE 1 AC7 5 HIS B 35 ASP B 37 HIS B 70 ASP B 175 SITE 2 AC7 5 5RP B 230 SITE 1 AC8 20 SER B 10 HIS B 35 ASP B 37 MET B 39 SITE 2 AC8 20 HIS B 70 MET B 72 PRO B 145 GLY B 146 SITE 3 AC8 20 PHE B 147 GLY B 148 GLY B 149 ASP B 175 SITE 4 AC8 20 GLY B 176 GLY B 177 GLY B 197 SER B 198 SITE 5 AC8 20 FE2 B 229 HOH B 238 HOH B 273 HOH B 293 SITE 1 AC9 3 LYS B 6 ASP B 32 ASP B 171 SITE 1 BC1 1 THR B 123 SITE 1 BC2 5 GLY B 87 ALA B 88 ASN B 89 GLY B 112 SITE 2 BC2 5 LYS B 114 CRYST1 61.785 43.535 72.269 90.00 94.88 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016185 0.000000 0.001382 0.00000 SCALE2 0.000000 0.022970 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013888 0.00000