HEADER TRANSFERASE 17-SEP-10 3OWG TITLE CRYSTAL STRUCTURE OF VACCINIA VIRUS POLYADENYLATE POLYMERASE(VP55) COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(A) POLYMERASE CATALYTIC SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POLY(A) POLYMERASE LARGE SUBUNIT, PAP-L, VP55; COMPND 5 EC: 2.7.7.19; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS WR; SOURCE 3 ORGANISM_COMMON: VACV; SOURCE 4 ORGANISM_TAXID: 10254; SOURCE 5 STRAIN: WESTERN RESERVE; SOURCE 6 GENE: PAPL, VACWR057, E1L; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-15B; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PPG198 KEYWDS RNA POLYADENYLATE POLYMERASE COMPLEX, TRANSLOCATION, POLYADENYLATE KEYWDS 2 POLYMERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.LI,H.LI,S.ZHOU,P.D.GERSHON,T.L.POULOS REVDAT 5 06-SEP-23 3OWG 1 SEQADV REVDAT 4 08-NOV-17 3OWG 1 REMARK REVDAT 3 03-APR-13 3OWG 1 JRNL REVDAT 2 27-MAR-13 3OWG 1 REVDAT 1 21-SEP-11 3OWG 0 JRNL AUTH H.LI,C.LI,S.ZHOU,T.L.POULOS,P.D.GERSHON JRNL TITL DOMAIN-LEVEL ROCKING MOTION WITHIN A POLYMERASE THAT JRNL TITL 2 TRANSLOCATES ON SINGLE-STRANDED NUCLEIC ACID. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 617 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23519670 JRNL DOI 10.1107/S0907444913000346 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.M.MOURE,B.R.BOWMAN,P.D.GERSHON,F.A.QUIOCHO REMARK 1 TITL CRYSTAL STRUCTURES OF THE VACCINIA VIRUS POLYADENYLATE REMARK 1 TITL 2 POLYMERASE HETERODIMER: INSIGHTS INTO ATP SELECTIVITY AND REMARK 1 TITL 3 PROCESSIVITY. REMARK 1 REF MOL.CELL V. 22 339 2006 REMARK 1 REFN ISSN 1097-2765 REMARK 1 PMID 16678106 REMARK 1 DOI 10.1016/J.MOLCEL.2006.03.015 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.LI,H.LI,S.ZHOU,E.SUN,J.YOSHIZAWA,T.L.POULOS,P.D.GERSHON REMARK 1 TITL POLYMERASE TRANSLOCATION WITH RESPECT TO SINGLE-STRANDED REMARK 1 TITL 2 NUCLEIC ACID: LOOPING OR WRAPPING OF PRIMER AROUND A POLY(A) REMARK 1 TITL 3 POLYMERASE. REMARK 1 REF STRUCTURE V. 17 680 2009 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 19446524 REMARK 1 DOI 10.1016/J.STR.2009.03.012 REMARK 2 REMARK 2 RESOLUTION. 2.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1227549.900 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 29693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.316 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1465 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4153 REMARK 3 BIN R VALUE (WORKING SET) : 0.3650 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 222 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.028 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7436 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 90.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 97.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 14.93000 REMARK 3 B22 (A**2) : -12.17000 REMARK 3 B33 (A**2) : -2.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM SIGMAA (A) : 0.57 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.59 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.67 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.880 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUP REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 67.83 REMARK 3 REMARK 3 NCS MODEL : RESTRAINT REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 3 THE NCS RESTRAINTS (WEIGHT=100)WAS IMPOSED DURING REFINEMENTS REMARK 4 REMARK 4 3OWG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061657. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9760 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29731 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.57700 REMARK 200 R SYM FOR SHELL (I) : 0.57700 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2GA9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12-16%PEG 3350,200MM NA-CITATE, 5% REMARK 280 GLYCERO, 1MM DTT, PH ~9, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.06400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 80.64500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.06400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 80.64500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ARG A 3 REMARK 465 ASN A 4 REMARK 465 PRO A 5 REMARK 465 ASP A 6 REMARK 465 GLN A 7 REMARK 465 ASN A 8 REMARK 465 THR A 9 REMARK 465 LEU A 10 REMARK 465 PRO A 11 REMARK 465 ILE A 150 REMARK 465 ASP A 151 REMARK 465 LYS A 152 REMARK 465 ALA A 153 REMARK 465 LYS A 154 REMARK 465 VAL A 155 REMARK 465 MET A 156 REMARK 465 GLY A 157 REMARK 465 ARG A 158 REMARK 465 HIS A 159 REMARK 465 ASN A 160 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ARG B 3 REMARK 465 ASN B 4 REMARK 465 PRO B 5 REMARK 465 ASP B 6 REMARK 465 GLN B 7 REMARK 465 ASN B 8 REMARK 465 THR B 9 REMARK 465 LEU B 10 REMARK 465 PRO B 11 REMARK 465 ILE B 150 REMARK 465 ASP B 151 REMARK 465 LYS B 152 REMARK 465 ALA B 153 REMARK 465 LYS B 154 REMARK 465 VAL B 155 REMARK 465 MET B 156 REMARK 465 GLY B 157 REMARK 465 ARG B 158 REMARK 465 HIS B 159 REMARK 465 ASN B 160 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 124 CB SER A 124 OG 0.115 REMARK 500 SER B 124 CB SER B 124 OG 0.143 REMARK 500 SER B 125 CB SER B 125 OG 0.078 REMARK 500 CYS B 185 CB CYS B 185 SG -0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 235 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 65 -17.50 -48.26 REMARK 500 ASP A 66 35.97 -88.58 REMARK 500 ASN A 68 92.07 -68.99 REMARK 500 ALA A 71 10.15 -65.67 REMARK 500 GLN A 87 30.67 -84.70 REMARK 500 LYS A 126 168.15 56.41 REMARK 500 VAL A 131 44.66 -68.07 REMARK 500 ASN A 146 85.94 -61.83 REMARK 500 ILE A 224 -75.89 -66.79 REMARK 500 SER A 254 144.94 -178.74 REMARK 500 ASP A 271 65.93 28.52 REMARK 500 GLN A 291 105.05 -58.55 REMARK 500 ILE A 292 -29.91 -39.83 REMARK 500 ARG A 328 -141.05 43.15 REMARK 500 ASN A 329 -127.76 -141.96 REMARK 500 ASN A 330 -0.51 70.28 REMARK 500 MET A 333 -159.33 -78.52 REMARK 500 ARG A 342 73.86 39.02 REMARK 500 VAL A 344 79.40 -158.32 REMARK 500 LYS A 349 -35.67 -35.12 REMARK 500 ASP A 350 -73.83 -66.44 REMARK 500 LYS A 355 -79.71 -40.13 REMARK 500 ASN A 374 -58.11 71.26 REMARK 500 ALA A 375 99.85 -52.09 REMARK 500 THR A 377 59.36 -154.57 REMARK 500 GLU A 382 -130.69 48.09 REMARK 500 SER A 401 32.79 -96.65 REMARK 500 SER A 432 16.03 80.69 REMARK 500 TYR A 435 -12.41 -159.02 REMARK 500 HIS A 467 32.73 -65.91 REMARK 500 SER B 27 178.72 -54.74 REMARK 500 ASP B 66 31.81 -82.23 REMARK 500 ASN B 68 91.69 -69.30 REMARK 500 ALA B 71 10.65 -63.40 REMARK 500 GLN B 87 32.40 -83.01 REMARK 500 ASN B 121 109.83 -24.89 REMARK 500 SER B 124 108.20 -30.43 REMARK 500 LYS B 126 -0.47 -151.21 REMARK 500 VAL B 131 39.66 -72.24 REMARK 500 ASN B 146 83.02 -67.52 REMARK 500 ALA B 148 -167.18 -78.85 REMARK 500 SER B 188 -67.34 -29.71 REMARK 500 ILE B 224 -74.98 -63.48 REMARK 500 ILE B 251 -62.99 -109.35 REMARK 500 SER B 254 144.67 179.13 REMARK 500 ASP B 271 67.22 22.24 REMARK 500 GLN B 291 108.79 -59.83 REMARK 500 LYS B 327 73.16 -59.57 REMARK 500 ARG B 328 -135.07 39.81 REMARK 500 ASN B 329 -53.63 -122.79 REMARK 500 REMARK 500 THIS ENTRY HAS 61 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 89 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GA9 RELATED DB: PDB REMARK 900 RELATED ID: 3ER9 RELATED DB: PDB REMARK 900 RELATED ID: 3ER8 RELATED DB: PDB REMARK 900 RELATED ID: 3ERC RELATED DB: PDB DBREF 3OWG A 1 479 UNP P23371 PAP1_VACCW 1 479 DBREF 3OWG B 1 479 UNP P23371 PAP1_VACCW 1 479 SEQADV 3OWG HIS A -5 UNP P23371 EXPRESSION TAG SEQADV 3OWG HIS A -4 UNP P23371 EXPRESSION TAG SEQADV 3OWG HIS A -3 UNP P23371 EXPRESSION TAG SEQADV 3OWG HIS A -2 UNP P23371 EXPRESSION TAG SEQADV 3OWG HIS A -1 UNP P23371 EXPRESSION TAG SEQADV 3OWG HIS A 0 UNP P23371 EXPRESSION TAG SEQADV 3OWG SER A 36 UNP P23371 LEU 36 ENGINEERED MUTATION SEQADV 3OWG HIS B -5 UNP P23371 EXPRESSION TAG SEQADV 3OWG HIS B -4 UNP P23371 EXPRESSION TAG SEQADV 3OWG HIS B -3 UNP P23371 EXPRESSION TAG SEQADV 3OWG HIS B -2 UNP P23371 EXPRESSION TAG SEQADV 3OWG HIS B -1 UNP P23371 EXPRESSION TAG SEQADV 3OWG HIS B 0 UNP P23371 EXPRESSION TAG SEQADV 3OWG SER B 36 UNP P23371 LEU 36 ENGINEERED MUTATION SEQRES 1 A 485 HIS HIS HIS HIS HIS HIS MET ASN ARG ASN PRO ASP GLN SEQRES 2 A 485 ASN THR LEU PRO ASN ILE THR LEU LYS ILE ILE GLU THR SEQRES 3 A 485 TYR LEU GLY ARG VAL PRO SER VAL ASN GLU TYR HIS MET SEQRES 4 A 485 LEU LYS SER GLN ALA ARG ASN ILE GLN LYS ILE THR VAL SEQRES 5 A 485 PHE ASN LYS ASP ILE PHE VAL SER LEU VAL LYS LYS ASN SEQRES 6 A 485 LYS LYS ARG PHE PHE SER ASP VAL ASN THR SER ALA SER SEQRES 7 A 485 GLU ILE LYS ASP ARG ILE LEU SER TYR PHE SER LYS GLN SEQRES 8 A 485 THR GLN THR TYR ASN ILE GLY LYS LEU PHE THR ILE ILE SEQRES 9 A 485 GLU LEU GLN SER VAL LEU VAL THR THR TYR THR ASP ILE SEQRES 10 A 485 LEU GLY VAL LEU THR ILE LYS ALA PRO ASN VAL ILE SER SEQRES 11 A 485 SER LYS ILE SER TYR ASN VAL THR SER MET GLU GLU LEU SEQRES 12 A 485 ALA ARG ASP MET LEU ASN SER MET ASN VAL ALA VAL ILE SEQRES 13 A 485 ASP LYS ALA LYS VAL MET GLY ARG HIS ASN VAL SER SER SEQRES 14 A 485 LEU VAL LYS ASN VAL ASN LYS LEU MET GLU GLU TYR LEU SEQRES 15 A 485 ARG ARG HIS ASN LYS SER CYS ILE CYS TYR GLY SER TYR SEQRES 16 A 485 SER LEU TYR LEU ILE ASN PRO ASN ILE ARG TYR GLY ASP SEQRES 17 A 485 ILE ASP ILE LEU GLN THR ASN SER ARG THR PHE LEU ILE SEQRES 18 A 485 ASP LEU ALA PHE LEU ILE LYS PHE ILE THR GLY ASN ASN SEQRES 19 A 485 ILE ILE LEU SER LYS ILE PRO TYR LEU ARG ASN TYR MET SEQRES 20 A 485 VAL ILE LYS ASP GLU ASN ASP ASN HIS ILE ILE ASP SER SEQRES 21 A 485 PHE ASN ILE ARG GLN ASP THR MET ASN VAL VAL PRO LYS SEQRES 22 A 485 ILE PHE ILE ASP ASN ILE TYR ILE VAL ASP PRO THR PHE SEQRES 23 A 485 GLN LEU LEU ASN MET ILE LYS MET PHE SER GLN ILE ASP SEQRES 24 A 485 ARG LEU GLU ASP LEU SER LYS ASP PRO GLU LYS PHE ASN SEQRES 25 A 485 ALA ARG MET ALA THR MET LEU GLU TYR VAL ARG TYR THR SEQRES 26 A 485 HIS GLY ILE VAL PHE ASP GLY LYS ARG ASN ASN MET PRO SEQRES 27 A 485 MET LYS CYS ILE ILE ASP GLU ASN ASN ARG ILE VAL THR SEQRES 28 A 485 VAL THR THR LYS ASP TYR PHE SER PHE LYS LYS CYS LEU SEQRES 29 A 485 VAL TYR LEU ASP GLU ASN VAL LEU SER SER ASP ILE LEU SEQRES 30 A 485 ASP LEU ASN ALA ASP THR SER CYS ASP PHE GLU SER VAL SEQRES 31 A 485 THR ASN SER VAL TYR LEU ILE HIS ASP ASN ILE MET TYR SEQRES 32 A 485 THR TYR PHE SER ASN THR ILE LEU LEU SER ASP LYS GLY SEQRES 33 A 485 LYS VAL HIS GLU ILE SER ALA ARG GLY LEU CYS ALA HIS SEQRES 34 A 485 ILE LEU LEU TYR GLN MET LEU THR SER GLY GLU TYR LYS SEQRES 35 A 485 GLN CYS LEU SER ASP LEU LEU ASN SER MET MET ASN ARG SEQRES 36 A 485 ASP LYS ILE PRO ILE TYR SER HIS THR GLU ARG ASP LYS SEQRES 37 A 485 LYS PRO GLY ARG HIS GLY PHE ILE ASN ILE GLU LYS ASP SEQRES 38 A 485 ILE ILE VAL PHE SEQRES 1 B 485 HIS HIS HIS HIS HIS HIS MET ASN ARG ASN PRO ASP GLN SEQRES 2 B 485 ASN THR LEU PRO ASN ILE THR LEU LYS ILE ILE GLU THR SEQRES 3 B 485 TYR LEU GLY ARG VAL PRO SER VAL ASN GLU TYR HIS MET SEQRES 4 B 485 LEU LYS SER GLN ALA ARG ASN ILE GLN LYS ILE THR VAL SEQRES 5 B 485 PHE ASN LYS ASP ILE PHE VAL SER LEU VAL LYS LYS ASN SEQRES 6 B 485 LYS LYS ARG PHE PHE SER ASP VAL ASN THR SER ALA SER SEQRES 7 B 485 GLU ILE LYS ASP ARG ILE LEU SER TYR PHE SER LYS GLN SEQRES 8 B 485 THR GLN THR TYR ASN ILE GLY LYS LEU PHE THR ILE ILE SEQRES 9 B 485 GLU LEU GLN SER VAL LEU VAL THR THR TYR THR ASP ILE SEQRES 10 B 485 LEU GLY VAL LEU THR ILE LYS ALA PRO ASN VAL ILE SER SEQRES 11 B 485 SER LYS ILE SER TYR ASN VAL THR SER MET GLU GLU LEU SEQRES 12 B 485 ALA ARG ASP MET LEU ASN SER MET ASN VAL ALA VAL ILE SEQRES 13 B 485 ASP LYS ALA LYS VAL MET GLY ARG HIS ASN VAL SER SER SEQRES 14 B 485 LEU VAL LYS ASN VAL ASN LYS LEU MET GLU GLU TYR LEU SEQRES 15 B 485 ARG ARG HIS ASN LYS SER CYS ILE CYS TYR GLY SER TYR SEQRES 16 B 485 SER LEU TYR LEU ILE ASN PRO ASN ILE ARG TYR GLY ASP SEQRES 17 B 485 ILE ASP ILE LEU GLN THR ASN SER ARG THR PHE LEU ILE SEQRES 18 B 485 ASP LEU ALA PHE LEU ILE LYS PHE ILE THR GLY ASN ASN SEQRES 19 B 485 ILE ILE LEU SER LYS ILE PRO TYR LEU ARG ASN TYR MET SEQRES 20 B 485 VAL ILE LYS ASP GLU ASN ASP ASN HIS ILE ILE ASP SER SEQRES 21 B 485 PHE ASN ILE ARG GLN ASP THR MET ASN VAL VAL PRO LYS SEQRES 22 B 485 ILE PHE ILE ASP ASN ILE TYR ILE VAL ASP PRO THR PHE SEQRES 23 B 485 GLN LEU LEU ASN MET ILE LYS MET PHE SER GLN ILE ASP SEQRES 24 B 485 ARG LEU GLU ASP LEU SER LYS ASP PRO GLU LYS PHE ASN SEQRES 25 B 485 ALA ARG MET ALA THR MET LEU GLU TYR VAL ARG TYR THR SEQRES 26 B 485 HIS GLY ILE VAL PHE ASP GLY LYS ARG ASN ASN MET PRO SEQRES 27 B 485 MET LYS CYS ILE ILE ASP GLU ASN ASN ARG ILE VAL THR SEQRES 28 B 485 VAL THR THR LYS ASP TYR PHE SER PHE LYS LYS CYS LEU SEQRES 29 B 485 VAL TYR LEU ASP GLU ASN VAL LEU SER SER ASP ILE LEU SEQRES 30 B 485 ASP LEU ASN ALA ASP THR SER CYS ASP PHE GLU SER VAL SEQRES 31 B 485 THR ASN SER VAL TYR LEU ILE HIS ASP ASN ILE MET TYR SEQRES 32 B 485 THR TYR PHE SER ASN THR ILE LEU LEU SER ASP LYS GLY SEQRES 33 B 485 LYS VAL HIS GLU ILE SER ALA ARG GLY LEU CYS ALA HIS SEQRES 34 B 485 ILE LEU LEU TYR GLN MET LEU THR SER GLY GLU TYR LYS SEQRES 35 B 485 GLN CYS LEU SER ASP LEU LEU ASN SER MET MET ASN ARG SEQRES 36 B 485 ASP LYS ILE PRO ILE TYR SER HIS THR GLU ARG ASP LYS SEQRES 37 B 485 LYS PRO GLY ARG HIS GLY PHE ILE ASN ILE GLU LYS ASP SEQRES 38 B 485 ILE ILE VAL PHE HELIX 1 1 ASN A 12 GLY A 23 1 12 HELIX 2 2 SER A 27 LYS A 35 1 9 HELIX 3 3 GLN A 37 PHE A 47 1 11 HELIX 4 4 ASN A 48 PHE A 64 1 17 HELIX 5 5 SER A 72 PHE A 82 1 11 HELIX 6 6 ASN A 90 LEU A 112 1 23 HELIX 7 7 GLY A 113 ILE A 117 5 5 HELIX 8 8 THR A 132 ASN A 146 1 15 HELIX 9 9 LEU A 164 HIS A 179 1 16 HELIX 10 10 GLY A 187 LEU A 193 1 7 HELIX 11 11 ASN A 209 GLY A 226 1 18 HELIX 12 12 ARG A 258 VAL A 265 1 8 HELIX 13 13 ASP A 277 MET A 288 1 12 HELIX 14 14 GLN A 291 ASP A 301 1 11 HELIX 15 15 ASP A 301 GLY A 321 1 21 HELIX 16 16 ASP A 362 LEU A 371 1 10 HELIX 17 17 PHE A 381 ASN A 386 1 6 HELIX 18 18 HIS A 413 SER A 432 1 20 HELIX 19 19 TYR A 435 SER A 445 1 11 HELIX 20 20 ASN B 12 GLY B 23 1 12 HELIX 21 21 SER B 27 LYS B 35 1 9 HELIX 22 22 GLN B 37 PHE B 47 1 11 HELIX 23 23 ASN B 48 PHE B 64 1 17 HELIX 24 24 SER B 72 PHE B 82 1 11 HELIX 25 25 ASN B 90 LEU B 112 1 23 HELIX 26 26 GLY B 113 ILE B 117 5 5 HELIX 27 27 THR B 132 ASN B 146 1 15 HELIX 28 28 LEU B 164 HIS B 179 1 16 HELIX 29 29 GLY B 187 LEU B 193 1 7 HELIX 30 30 ASN B 209 GLY B 226 1 18 HELIX 31 31 ARG B 258 VAL B 265 1 8 HELIX 32 32 ASP B 277 PHE B 289 1 13 HELIX 33 33 GLN B 291 ASP B 301 1 11 HELIX 34 34 ASP B 301 GLY B 321 1 21 HELIX 35 35 GLU B 363 LEU B 371 1 9 HELIX 36 36 PHE B 381 ASN B 386 1 6 HELIX 37 37 HIS B 413 SER B 432 1 20 HELIX 38 38 TYR B 435 SER B 445 1 11 SHEET 1 A 6 CYS A 183 TYR A 186 0 SHEET 2 A 6 ASP A 204 GLN A 207 -1 O LEU A 206 N ILE A 184 SHEET 3 A 6 HIS A 250 ASN A 256 1 O PHE A 255 N GLN A 207 SHEET 4 A 6 TYR A 240 ASP A 245 -1 N ILE A 243 O ILE A 252 SHEET 5 A 6 ILE A 229 ILE A 234 -1 N SER A 232 O VAL A 242 SHEET 6 A 6 PHE A 469 ASN A 471 -1 O ILE A 470 N LEU A 231 SHEET 1 B 2 LYS A 267 ILE A 270 0 SHEET 2 B 2 ILE A 273 VAL A 276 -1 O ILE A 275 N ILE A 268 SHEET 1 C 6 ILE A 336 ILE A 337 0 SHEET 2 C 6 VAL A 344 THR A 347 -1 O THR A 345 N ILE A 336 SHEET 3 C 6 LYS A 356 TYR A 360 -1 O CYS A 357 N VAL A 346 SHEET 4 C 6 ILE A 395 TYR A 399 1 O MET A 396 N LEU A 358 SHEET 5 C 6 VAL A 388 HIS A 392 -1 N HIS A 392 O ILE A 395 SHEET 6 C 6 CYS A 379 ASP A 380 -1 N CYS A 379 O TYR A 389 SHEET 1 D 3 LYS A 411 VAL A 412 0 SHEET 2 D 3 LEU A 405 ASP A 408 -1 N ASP A 408 O LYS A 411 SHEET 3 D 3 SER A 456 HIS A 457 -1 O SER A 456 N LEU A 406 SHEET 1 E 7 CYS B 183 TYR B 186 0 SHEET 2 E 7 ASP B 204 GLN B 207 -1 O LEU B 206 N ILE B 184 SHEET 3 E 7 HIS B 250 ASN B 256 1 O PHE B 255 N GLN B 207 SHEET 4 E 7 TYR B 240 ASP B 245 -1 N ILE B 243 O ILE B 252 SHEET 5 E 7 ILE B 229 SER B 232 -1 N SER B 232 O VAL B 242 SHEET 6 E 7 PHE B 469 ASN B 471 -1 O ILE B 470 N LEU B 231 SHEET 7 E 7 ILE B 476 ILE B 477 -1 O ILE B 476 N ASN B 471 SHEET 1 F 2 LYS B 267 ILE B 270 0 SHEET 2 F 2 ILE B 273 VAL B 276 -1 O ILE B 275 N ILE B 268 SHEET 1 G 6 CYS B 335 ASP B 338 0 SHEET 2 G 6 ILE B 343 THR B 347 -1 O THR B 345 N ILE B 336 SHEET 3 G 6 LYS B 356 TYR B 360 -1 O CYS B 357 N VAL B 346 SHEET 4 G 6 ILE B 395 TYR B 399 1 O MET B 396 N LEU B 358 SHEET 5 G 6 VAL B 388 HIS B 392 -1 N LEU B 390 O TYR B 397 SHEET 6 G 6 CYS B 379 ASP B 380 -1 N CYS B 379 O TYR B 389 SHEET 1 H 3 LYS B 411 VAL B 412 0 SHEET 2 H 3 LEU B 405 ASP B 408 -1 N ASP B 408 O LYS B 411 SHEET 3 H 3 SER B 456 HIS B 457 -1 O SER B 456 N LEU B 406 CISPEP 1 MET A 331 PRO A 332 0 -0.25 CISPEP 2 MET B 331 PRO B 332 0 0.61 CRYST1 80.128 161.290 97.672 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012480 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010238 0.00000