data_3OYW
#
_entry.id 3OYW
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.397
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3OYW pdb_00003oyw 10.2210/pdb3oyw/pdb
RCSB RCSB061745 ? ?
WWPDB D_1000061745 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2010-11-03
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2017-11-08
4 'Structure model' 2 0 2020-07-29
5 'Structure model' 3 0 2020-08-12
6 'Structure model' 3 1 2024-10-30
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Refinement description'
3 4 'Structure model' 'Atomic model'
4 4 'Structure model' 'Data collection'
5 4 'Structure model' 'Derived calculations'
6 4 'Structure model' 'Non-polymer description'
7 4 'Structure model' 'Structure summary'
8 5 'Structure model' 'Atomic model'
9 5 'Structure model' 'Data collection'
10 5 'Structure model' 'Derived calculations'
11 5 'Structure model' 'Structure summary'
12 6 'Structure model' 'Data collection'
13 6 'Structure model' 'Database references'
14 6 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' software
2 4 'Structure model' atom_site
3 4 'Structure model' chem_comp
4 4 'Structure model' entity
5 4 'Structure model' pdbx_branch_scheme
6 4 'Structure model' pdbx_chem_comp_identifier
7 4 'Structure model' pdbx_entity_branch
8 4 'Structure model' pdbx_entity_branch_descriptor
9 4 'Structure model' pdbx_entity_branch_link
10 4 'Structure model' pdbx_entity_branch_list
11 4 'Structure model' pdbx_entity_nonpoly
12 4 'Structure model' pdbx_nonpoly_scheme
13 4 'Structure model' struct_conn
14 4 'Structure model' struct_site
15 4 'Structure model' struct_site_gen
16 5 'Structure model' atom_site
17 5 'Structure model' chem_comp
18 5 'Structure model' pdbx_branch_scheme
19 5 'Structure model' pdbx_molecule_features
20 5 'Structure model' struct_conn
21 6 'Structure model' chem_comp_atom
22 6 'Structure model' chem_comp_bond
23 6 'Structure model' database_2
24 6 'Structure model' pdbx_entry_details
25 6 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_atom_site.B_iso_or_equiv'
2 4 'Structure model' '_atom_site.Cartn_x'
3 4 'Structure model' '_atom_site.Cartn_y'
4 4 'Structure model' '_atom_site.Cartn_z'
5 4 'Structure model' '_atom_site.auth_asym_id'
6 4 'Structure model' '_atom_site.auth_atom_id'
7 4 'Structure model' '_atom_site.auth_comp_id'
8 4 'Structure model' '_atom_site.auth_seq_id'
9 4 'Structure model' '_atom_site.label_atom_id'
10 4 'Structure model' '_atom_site.label_comp_id'
11 4 'Structure model' '_atom_site.type_symbol'
12 4 'Structure model' '_chem_comp.formula'
13 4 'Structure model' '_chem_comp.formula_weight'
14 4 'Structure model' '_chem_comp.id'
15 4 'Structure model' '_chem_comp.mon_nstd_flag'
16 4 'Structure model' '_chem_comp.name'
17 4 'Structure model' '_chem_comp.type'
18 4 'Structure model' '_entity.pdbx_description'
19 4 'Structure model' '_entity.src_method'
20 4 'Structure model' '_entity.type'
21 5 'Structure model' '_atom_site.B_iso_or_equiv'
22 5 'Structure model' '_atom_site.Cartn_x'
23 5 'Structure model' '_atom_site.Cartn_y'
24 5 'Structure model' '_atom_site.Cartn_z'
25 5 'Structure model' '_atom_site.auth_asym_id'
26 5 'Structure model' '_chem_comp.pdbx_synonyms'
27 5 'Structure model' '_pdbx_branch_scheme.pdb_asym_id'
28 5 'Structure model' '_struct_conn.pdbx_dist_value'
29 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
30 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
31 6 'Structure model' '_database_2.pdbx_DOI'
32 6 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 3OYW
_pdbx_database_status.recvd_initial_deposition_date 2010-09-23
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 3OY8
_pdbx_database_related.details .
_pdbx_database_related.content_type unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Blanchard, H.' 1
'Collins, P.M.' 2
#
_citation.id primary
_citation.title 'Galectin inhibitory disaccharides promote tumour immunity in a breast cancer model'
_citation.journal_abbrev 'CANCER LETT.'
_citation.journal_volume ?
_citation.page_first ?
_citation.page_last ?
_citation.year 2010
_citation.journal_id_ASTM ?
_citation.country IE
_citation.journal_id_ISSN 1872-7980
_citation.journal_id_CSD ?
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 20826047
_citation.pdbx_database_id_DOI 10.1016/j.canlet.2010.08.005
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Stannard, K.A.' 1 ?
primary 'Collins, P.M.' 2 ?
primary 'Ito, K.' 3 ?
primary 'Sullivan, E.M.' 4 ?
primary 'Scott, S.A.' 5 ?
primary 'Gabutero, E.' 6 ?
primary 'Darren Grice, I.' 7 ?
primary 'Low, P.' 8 ?
primary 'Nilsson, U.J.' 9 ?
primary 'Leffler, H.' 10 ?
primary 'Blanchard, H.' 11 ?
primary 'Ralph, S.J.' 12 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man Galectin-1 14707.594 1 ? ? ? ?
2 polymer man Galectin-1 14767.713 1 ? ? ? ?
3 branched man 'beta-D-galactopyranose-(1-1)-1-thio-beta-D-galactopyranose' 358.362 2 ? ? ? ?
4 water nat water 18.015 66 ? ? ? ?
#
loop_
_entity_name_com.entity_id
_entity_name_com.name
1
;Gal-1, Lectin galactoside-binding soluble 1, Beta-galactoside-binding lectin L-14-I, Lactose-binding lectin 1, S-Lac lectin 1, Galaptin, 14 kDa lectin, HPL, HBL, Putative MAPK-activating protein PM12, 14 kDa laminin-binding protein, HLBP14
;
2
;Gal-1, Lectin galactoside-binding soluble 1, Beta-galactoside-binding lectin L-14-I, Lactose-binding lectin 1, S-Lac lectin 1, Galaptin, 14 kDa lectin, HPL, HBL, Putative MAPK-activating protein PM12, 14 kDa laminin-binding protein, HLBP14
;
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 'polypeptide(L)' no yes
;ACGLVASNLNLKPGE(CSO)LRVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDGGAWGTEQREAV
FPFQPGSVAEV(CSO)ITFDQANLTVKLPDGYEFKFPNRLNLEAINYMAADGDFKIK(CME)VAFD
;
;ACGLVASNLNLKPGECLRVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDGGAWGTEQREAVFPFQ
PGSVAEVCITFDQANLTVKLPDGYEFKFPNRLNLEAINYMAADGDFKIKCVAFD
;
A ?
2 'polypeptide(L)' no yes
;ACGLVASNLNLKPGE(CSO)LRVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDGGAWGTEQREAV
FPFQPGSVAEV(CME)ITFDQANLTVKLPDGYEFKFPNRLNLEAINYMAADGDFKIK(CME)VAFD
;
;ACGLVASNLNLKPGECLRVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDGGAWGTEQREAVFPFQ
PGSVAEVCITFDQANLTVKLPDGYEFKFPNRLNLEAINYMAADGDFKIKCVAFD
;
B ?
#
_pdbx_entity_nonpoly.entity_id 4
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ALA n
1 2 CYS n
1 3 GLY n
1 4 LEU n
1 5 VAL n
1 6 ALA n
1 7 SER n
1 8 ASN n
1 9 LEU n
1 10 ASN n
1 11 LEU n
1 12 LYS n
1 13 PRO n
1 14 GLY n
1 15 GLU n
1 16 CSO n
1 17 LEU n
1 18 ARG n
1 19 VAL n
1 20 ARG n
1 21 GLY n
1 22 GLU n
1 23 VAL n
1 24 ALA n
1 25 PRO n
1 26 ASP n
1 27 ALA n
1 28 LYS n
1 29 SER n
1 30 PHE n
1 31 VAL n
1 32 LEU n
1 33 ASN n
1 34 LEU n
1 35 GLY n
1 36 LYS n
1 37 ASP n
1 38 SER n
1 39 ASN n
1 40 ASN n
1 41 LEU n
1 42 CYS n
1 43 LEU n
1 44 HIS n
1 45 PHE n
1 46 ASN n
1 47 PRO n
1 48 ARG n
1 49 PHE n
1 50 ASN n
1 51 ALA n
1 52 HIS n
1 53 GLY n
1 54 ASP n
1 55 ALA n
1 56 ASN n
1 57 THR n
1 58 ILE n
1 59 VAL n
1 60 CYS n
1 61 ASN n
1 62 SER n
1 63 LYS n
1 64 ASP n
1 65 GLY n
1 66 GLY n
1 67 ALA n
1 68 TRP n
1 69 GLY n
1 70 THR n
1 71 GLU n
1 72 GLN n
1 73 ARG n
1 74 GLU n
1 75 ALA n
1 76 VAL n
1 77 PHE n
1 78 PRO n
1 79 PHE n
1 80 GLN n
1 81 PRO n
1 82 GLY n
1 83 SER n
1 84 VAL n
1 85 ALA n
1 86 GLU n
1 87 VAL n
1 88 CSO n
1 89 ILE n
1 90 THR n
1 91 PHE n
1 92 ASP n
1 93 GLN n
1 94 ALA n
1 95 ASN n
1 96 LEU n
1 97 THR n
1 98 VAL n
1 99 LYS n
1 100 LEU n
1 101 PRO n
1 102 ASP n
1 103 GLY n
1 104 TYR n
1 105 GLU n
1 106 PHE n
1 107 LYS n
1 108 PHE n
1 109 PRO n
1 110 ASN n
1 111 ARG n
1 112 LEU n
1 113 ASN n
1 114 LEU n
1 115 GLU n
1 116 ALA n
1 117 ILE n
1 118 ASN n
1 119 TYR n
1 120 MET n
1 121 ALA n
1 122 ALA n
1 123 ASP n
1 124 GLY n
1 125 ASP n
1 126 PHE n
1 127 LYS n
1 128 ILE n
1 129 LYS n
1 130 CME n
1 131 VAL n
1 132 ALA n
1 133 PHE n
1 134 ASP n
2 1 ALA n
2 2 CYS n
2 3 GLY n
2 4 LEU n
2 5 VAL n
2 6 ALA n
2 7 SER n
2 8 ASN n
2 9 LEU n
2 10 ASN n
2 11 LEU n
2 12 LYS n
2 13 PRO n
2 14 GLY n
2 15 GLU n
2 16 CSO n
2 17 LEU n
2 18 ARG n
2 19 VAL n
2 20 ARG n
2 21 GLY n
2 22 GLU n
2 23 VAL n
2 24 ALA n
2 25 PRO n
2 26 ASP n
2 27 ALA n
2 28 LYS n
2 29 SER n
2 30 PHE n
2 31 VAL n
2 32 LEU n
2 33 ASN n
2 34 LEU n
2 35 GLY n
2 36 LYS n
2 37 ASP n
2 38 SER n
2 39 ASN n
2 40 ASN n
2 41 LEU n
2 42 CYS n
2 43 LEU n
2 44 HIS n
2 45 PHE n
2 46 ASN n
2 47 PRO n
2 48 ARG n
2 49 PHE n
2 50 ASN n
2 51 ALA n
2 52 HIS n
2 53 GLY n
2 54 ASP n
2 55 ALA n
2 56 ASN n
2 57 THR n
2 58 ILE n
2 59 VAL n
2 60 CYS n
2 61 ASN n
2 62 SER n
2 63 LYS n
2 64 ASP n
2 65 GLY n
2 66 GLY n
2 67 ALA n
2 68 TRP n
2 69 GLY n
2 70 THR n
2 71 GLU n
2 72 GLN n
2 73 ARG n
2 74 GLU n
2 75 ALA n
2 76 VAL n
2 77 PHE n
2 78 PRO n
2 79 PHE n
2 80 GLN n
2 81 PRO n
2 82 GLY n
2 83 SER n
2 84 VAL n
2 85 ALA n
2 86 GLU n
2 87 VAL n
2 88 CME n
2 89 ILE n
2 90 THR n
2 91 PHE n
2 92 ASP n
2 93 GLN n
2 94 ALA n
2 95 ASN n
2 96 LEU n
2 97 THR n
2 98 VAL n
2 99 LYS n
2 100 LEU n
2 101 PRO n
2 102 ASP n
2 103 GLY n
2 104 TYR n
2 105 GLU n
2 106 PHE n
2 107 LYS n
2 108 PHE n
2 109 PRO n
2 110 ASN n
2 111 ARG n
2 112 LEU n
2 113 ASN n
2 114 LEU n
2 115 GLU n
2 116 ALA n
2 117 ILE n
2 118 ASN n
2 119 TYR n
2 120 MET n
2 121 ALA n
2 122 ALA n
2 123 ASP n
2 124 GLY n
2 125 ASP n
2 126 PHE n
2 127 LYS n
2 128 ILE n
2 129 LYS n
2 130 CME n
2 131 VAL n
2 132 ALA n
2 133 PHE n
2 134 ASP n
#
loop_
_entity_src_gen.entity_id
_entity_src_gen.pdbx_src_id
_entity_src_gen.pdbx_alt_source_flag
_entity_src_gen.pdbx_seq_type
_entity_src_gen.pdbx_beg_seq_num
_entity_src_gen.pdbx_end_seq_num
_entity_src_gen.gene_src_common_name
_entity_src_gen.gene_src_genus
_entity_src_gen.pdbx_gene_src_gene
_entity_src_gen.gene_src_species
_entity_src_gen.gene_src_strain
_entity_src_gen.gene_src_tissue
_entity_src_gen.gene_src_tissue_fraction
_entity_src_gen.gene_src_details
_entity_src_gen.pdbx_gene_src_fragment
_entity_src_gen.pdbx_gene_src_scientific_name
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id
_entity_src_gen.pdbx_gene_src_variant
_entity_src_gen.pdbx_gene_src_cell_line
_entity_src_gen.pdbx_gene_src_atcc
_entity_src_gen.pdbx_gene_src_organ
_entity_src_gen.pdbx_gene_src_organelle
_entity_src_gen.pdbx_gene_src_cell
_entity_src_gen.pdbx_gene_src_cellular_location
_entity_src_gen.host_org_common_name
_entity_src_gen.pdbx_host_org_scientific_name
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id
_entity_src_gen.host_org_genus
_entity_src_gen.pdbx_host_org_gene
_entity_src_gen.pdbx_host_org_organ
_entity_src_gen.host_org_species
_entity_src_gen.pdbx_host_org_tissue
_entity_src_gen.pdbx_host_org_tissue_fraction
_entity_src_gen.pdbx_host_org_strain
_entity_src_gen.pdbx_host_org_variant
_entity_src_gen.pdbx_host_org_cell_line
_entity_src_gen.pdbx_host_org_atcc
_entity_src_gen.pdbx_host_org_culture_collection
_entity_src_gen.pdbx_host_org_cell
_entity_src_gen.pdbx_host_org_organelle
_entity_src_gen.pdbx_host_org_cellular_location
_entity_src_gen.pdbx_host_org_vector_type
_entity_src_gen.pdbx_host_org_vector
_entity_src_gen.host_org_details
_entity_src_gen.expression_system_id
_entity_src_gen.plasmid_name
_entity_src_gen.plasmid_details
_entity_src_gen.pdbx_description
1 1 sample ? ? ? human ? LGALS1 ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ?
? ? ? ? ? ? ?
2 1 sample ? ? ? human ? LGALS1 ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ?
? ? ? ? ? ? ?
#
_pdbx_entity_branch.entity_id 3
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 3 'WURCS=2.0/1,2,1/[a2112h-1b_1-5]/1-1/a1-b1*S*' WURCS PDB2Glycan 1.1.0
2 3 '[][b-D-Galp1SH]{[(1+S)][b-D-Galp]{}}' LINUCS PDB-CARE ?
#
_pdbx_entity_branch_link.link_id 1
_pdbx_entity_branch_link.entity_id 3
_pdbx_entity_branch_link.entity_branch_list_num_1 2
_pdbx_entity_branch_link.comp_id_1 GAL
_pdbx_entity_branch_link.atom_id_1 C1
_pdbx_entity_branch_link.leaving_atom_id_1 O1
_pdbx_entity_branch_link.entity_branch_list_num_2 1
_pdbx_entity_branch_link.comp_id_2 YIO
_pdbx_entity_branch_link.atom_id_2 S1
_pdbx_entity_branch_link.leaving_atom_id_2 HS1
_pdbx_entity_branch_link.value_order sing
_pdbx_entity_branch_link.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CME 'L-peptide linking' n 'S,S-(2-HYDROXYETHYL)THIOCYSTEINE' ? 'C5 H11 N O3 S2' 197.276
CSO 'L-peptide linking' n S-HYDROXYCYSTEINE ? 'C3 H7 N O3 S' 137.158
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6'
180.156
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
YIO 'D-saccharide, beta linking' . 1-thio-beta-D-galactopyranose
'(2R,3R,4S,5R,6S)-2-(HYDROXYMETHYL)-6-SULFANYL-OXANE-3,4,5-TRIOL; 1-thio-beta-D-galactose; 1-thio-D-galactose; 1-thio-galactose'
'C6 H12 O5 S' 196.221
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb
GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose
GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp
GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal
YIO 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp1SH
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ALA 1 1 1 ALA ALA A . n
A 1 2 CYS 2 2 2 CYS CYS A . n
A 1 3 GLY 3 3 3 GLY GLY A . n
A 1 4 LEU 4 4 4 LEU LEU A . n
A 1 5 VAL 5 5 5 VAL VAL A . n
A 1 6 ALA 6 6 6 ALA ALA A . n
A 1 7 SER 7 7 7 SER SER A . n
A 1 8 ASN 8 8 8 ASN ASN A . n
A 1 9 LEU 9 9 9 LEU LEU A . n
A 1 10 ASN 10 10 10 ASN ASN A . n
A 1 11 LEU 11 11 11 LEU LEU A . n
A 1 12 LYS 12 12 12 LYS LYS A . n
A 1 13 PRO 13 13 13 PRO PRO A . n
A 1 14 GLY 14 14 14 GLY GLY A . n
A 1 15 GLU 15 15 15 GLU GLU A . n
A 1 16 CSO 16 16 16 CSO CSO A . n
A 1 17 LEU 17 17 17 LEU LEU A . n
A 1 18 ARG 18 18 18 ARG ARG A . n
A 1 19 VAL 19 19 19 VAL VAL A . n
A 1 20 ARG 20 20 20 ARG ARG A . n
A 1 21 GLY 21 21 21 GLY GLY A . n
A 1 22 GLU 22 22 22 GLU GLU A . n
A 1 23 VAL 23 23 23 VAL VAL A . n
A 1 24 ALA 24 24 24 ALA ALA A . n
A 1 25 PRO 25 25 25 PRO PRO A . n
A 1 26 ASP 26 26 26 ASP ASP A . n
A 1 27 ALA 27 27 27 ALA ALA A . n
A 1 28 LYS 28 28 28 LYS LYS A . n
A 1 29 SER 29 29 29 SER SER A . n
A 1 30 PHE 30 30 30 PHE PHE A . n
A 1 31 VAL 31 31 31 VAL VAL A . n
A 1 32 LEU 32 32 32 LEU LEU A . n
A 1 33 ASN 33 33 33 ASN ASN A . n
A 1 34 LEU 34 34 34 LEU LEU A . n
A 1 35 GLY 35 35 35 GLY GLY A . n
A 1 36 LYS 36 36 36 LYS LYS A . n
A 1 37 ASP 37 37 37 ASP ASP A . n
A 1 38 SER 38 38 38 SER SER A . n
A 1 39 ASN 39 39 39 ASN ASN A . n
A 1 40 ASN 40 40 40 ASN ASN A . n
A 1 41 LEU 41 41 41 LEU LEU A . n
A 1 42 CYS 42 42 42 CYS CYS A . n
A 1 43 LEU 43 43 43 LEU LEU A . n
A 1 44 HIS 44 44 44 HIS HIS A . n
A 1 45 PHE 45 45 45 PHE PHE A . n
A 1 46 ASN 46 46 46 ASN ASN A . n
A 1 47 PRO 47 47 47 PRO PRO A . n
A 1 48 ARG 48 48 48 ARG ARG A . n
A 1 49 PHE 49 49 49 PHE PHE A . n
A 1 50 ASN 50 50 50 ASN ASN A . n
A 1 51 ALA 51 51 51 ALA ALA A . n
A 1 52 HIS 52 52 52 HIS HIS A . n
A 1 53 GLY 53 53 53 GLY GLY A . n
A 1 54 ASP 54 54 54 ASP ASP A . n
A 1 55 ALA 55 55 55 ALA ALA A . n
A 1 56 ASN 56 56 56 ASN ASN A . n
A 1 57 THR 57 57 57 THR THR A . n
A 1 58 ILE 58 58 58 ILE ILE A . n
A 1 59 VAL 59 59 59 VAL VAL A . n
A 1 60 CYS 60 60 60 CYS CYS A . n
A 1 61 ASN 61 61 61 ASN ASN A . n
A 1 62 SER 62 62 62 SER SER A . n
A 1 63 LYS 63 63 63 LYS LYS A . n
A 1 64 ASP 64 64 64 ASP ASP A . n
A 1 65 GLY 65 65 65 GLY GLY A . n
A 1 66 GLY 66 66 66 GLY GLY A . n
A 1 67 ALA 67 67 67 ALA ALA A . n
A 1 68 TRP 68 68 68 TRP TRP A . n
A 1 69 GLY 69 69 69 GLY GLY A . n
A 1 70 THR 70 70 70 THR THR A . n
A 1 71 GLU 71 71 71 GLU GLU A . n
A 1 72 GLN 72 72 72 GLN GLN A . n
A 1 73 ARG 73 73 73 ARG ARG A . n
A 1 74 GLU 74 74 74 GLU GLU A . n
A 1 75 ALA 75 75 75 ALA ALA A . n
A 1 76 VAL 76 76 76 VAL VAL A . n
A 1 77 PHE 77 77 77 PHE PHE A . n
A 1 78 PRO 78 78 78 PRO PRO A . n
A 1 79 PHE 79 79 79 PHE PHE A . n
A 1 80 GLN 80 80 80 GLN GLN A . n
A 1 81 PRO 81 81 81 PRO PRO A . n
A 1 82 GLY 82 82 82 GLY GLY A . n
A 1 83 SER 83 83 83 SER SER A . n
A 1 84 VAL 84 84 84 VAL VAL A . n
A 1 85 ALA 85 85 85 ALA ALA A . n
A 1 86 GLU 86 86 86 GLU GLU A . n
A 1 87 VAL 87 87 87 VAL VAL A . n
A 1 88 CSO 88 88 88 CSO CSO A . n
A 1 89 ILE 89 89 89 ILE ILE A . n
A 1 90 THR 90 90 90 THR THR A . n
A 1 91 PHE 91 91 91 PHE PHE A . n
A 1 92 ASP 92 92 92 ASP ASP A . n
A 1 93 GLN 93 93 93 GLN GLN A . n
A 1 94 ALA 94 94 94 ALA ALA A . n
A 1 95 ASN 95 95 95 ASN ASN A . n
A 1 96 LEU 96 96 96 LEU LEU A . n
A 1 97 THR 97 97 97 THR THR A . n
A 1 98 VAL 98 98 98 VAL VAL A . n
A 1 99 LYS 99 99 99 LYS LYS A . n
A 1 100 LEU 100 100 100 LEU LEU A . n
A 1 101 PRO 101 101 101 PRO PRO A . n
A 1 102 ASP 102 102 102 ASP ASP A . n
A 1 103 GLY 103 103 103 GLY GLY A . n
A 1 104 TYR 104 104 104 TYR TYR A . n
A 1 105 GLU 105 105 105 GLU GLU A . n
A 1 106 PHE 106 106 106 PHE PHE A . n
A 1 107 LYS 107 107 107 LYS LYS A . n
A 1 108 PHE 108 108 108 PHE PHE A . n
A 1 109 PRO 109 109 109 PRO PRO A . n
A 1 110 ASN 110 110 110 ASN ASN A . n
A 1 111 ARG 111 111 111 ARG ARG A . n
A 1 112 LEU 112 112 112 LEU LEU A . n
A 1 113 ASN 113 113 113 ASN ASN A . n
A 1 114 LEU 114 114 114 LEU LEU A . n
A 1 115 GLU 115 115 115 GLU GLU A . n
A 1 116 ALA 116 116 116 ALA ALA A . n
A 1 117 ILE 117 117 117 ILE ILE A . n
A 1 118 ASN 118 118 118 ASN ASN A . n
A 1 119 TYR 119 119 119 TYR TYR A . n
A 1 120 MET 120 120 120 MET MET A . n
A 1 121 ALA 121 121 121 ALA ALA A . n
A 1 122 ALA 122 122 122 ALA ALA A . n
A 1 123 ASP 123 123 123 ASP ASP A . n
A 1 124 GLY 124 124 124 GLY GLY A . n
A 1 125 ASP 125 125 125 ASP ASP A . n
A 1 126 PHE 126 126 126 PHE PHE A . n
A 1 127 LYS 127 127 127 LYS LYS A . n
A 1 128 ILE 128 128 128 ILE ILE A . n
A 1 129 LYS 129 129 129 LYS LYS A . n
A 1 130 CME 130 130 130 CME CME A . n
A 1 131 VAL 131 131 131 VAL VAL A . n
A 1 132 ALA 132 132 132 ALA ALA A . n
A 1 133 PHE 133 133 133 PHE PHE A . n
A 1 134 ASP 134 134 134 ASP ASP A . n
B 2 1 ALA 1 1 1 ALA ALA B . n
B 2 2 CYS 2 2 2 CYS CYS B . n
B 2 3 GLY 3 3 3 GLY GLY B . n
B 2 4 LEU 4 4 4 LEU LEU B . n
B 2 5 VAL 5 5 5 VAL VAL B . n
B 2 6 ALA 6 6 6 ALA ALA B . n
B 2 7 SER 7 7 7 SER SER B . n
B 2 8 ASN 8 8 8 ASN ASN B . n
B 2 9 LEU 9 9 9 LEU LEU B . n
B 2 10 ASN 10 10 10 ASN ASN B . n
B 2 11 LEU 11 11 11 LEU LEU B . n
B 2 12 LYS 12 12 12 LYS LYS B . n
B 2 13 PRO 13 13 13 PRO PRO B . n
B 2 14 GLY 14 14 14 GLY GLY B . n
B 2 15 GLU 15 15 15 GLU GLU B . n
B 2 16 CSO 16 16 16 CSO CSO B . n
B 2 17 LEU 17 17 17 LEU LEU B . n
B 2 18 ARG 18 18 18 ARG ARG B . n
B 2 19 VAL 19 19 19 VAL VAL B . n
B 2 20 ARG 20 20 20 ARG ARG B . n
B 2 21 GLY 21 21 21 GLY GLY B . n
B 2 22 GLU 22 22 22 GLU GLU B . n
B 2 23 VAL 23 23 23 VAL VAL B . n
B 2 24 ALA 24 24 24 ALA ALA B . n
B 2 25 PRO 25 25 25 PRO PRO B . n
B 2 26 ASP 26 26 26 ASP ASP B . n
B 2 27 ALA 27 27 27 ALA ALA B . n
B 2 28 LYS 28 28 28 LYS LYS B . n
B 2 29 SER 29 29 29 SER SER B . n
B 2 30 PHE 30 30 30 PHE PHE B . n
B 2 31 VAL 31 31 31 VAL VAL B . n
B 2 32 LEU 32 32 32 LEU LEU B . n
B 2 33 ASN 33 33 33 ASN ASN B . n
B 2 34 LEU 34 34 34 LEU LEU B . n
B 2 35 GLY 35 35 35 GLY GLY B . n
B 2 36 LYS 36 36 36 LYS LYS B . n
B 2 37 ASP 37 37 37 ASP ASP B . n
B 2 38 SER 38 38 38 SER SER B . n
B 2 39 ASN 39 39 39 ASN ASN B . n
B 2 40 ASN 40 40 40 ASN ASN B . n
B 2 41 LEU 41 41 41 LEU LEU B . n
B 2 42 CYS 42 42 42 CYS CYS B . n
B 2 43 LEU 43 43 43 LEU LEU B . n
B 2 44 HIS 44 44 44 HIS HIS B . n
B 2 45 PHE 45 45 45 PHE PHE B . n
B 2 46 ASN 46 46 46 ASN ASN B . n
B 2 47 PRO 47 47 47 PRO PRO B . n
B 2 48 ARG 48 48 48 ARG ARG B . n
B 2 49 PHE 49 49 49 PHE PHE B . n
B 2 50 ASN 50 50 50 ASN ASN B . n
B 2 51 ALA 51 51 51 ALA ALA B . n
B 2 52 HIS 52 52 52 HIS HIS B . n
B 2 53 GLY 53 53 53 GLY GLY B . n
B 2 54 ASP 54 54 54 ASP ASP B . n
B 2 55 ALA 55 55 55 ALA ALA B . n
B 2 56 ASN 56 56 56 ASN ASN B . n
B 2 57 THR 57 57 57 THR THR B . n
B 2 58 ILE 58 58 58 ILE ILE B . n
B 2 59 VAL 59 59 59 VAL VAL B . n
B 2 60 CYS 60 60 60 CYS CYS B . n
B 2 61 ASN 61 61 61 ASN ASN B . n
B 2 62 SER 62 62 62 SER SER B . n
B 2 63 LYS 63 63 63 LYS LYS B . n
B 2 64 ASP 64 64 64 ASP ASP B . n
B 2 65 GLY 65 65 65 GLY GLY B . n
B 2 66 GLY 66 66 66 GLY GLY B . n
B 2 67 ALA 67 67 67 ALA ALA B . n
B 2 68 TRP 68 68 68 TRP TRP B . n
B 2 69 GLY 69 69 69 GLY GLY B . n
B 2 70 THR 70 70 70 THR THR B . n
B 2 71 GLU 71 71 71 GLU GLU B . n
B 2 72 GLN 72 72 72 GLN GLN B . n
B 2 73 ARG 73 73 73 ARG ARG B . n
B 2 74 GLU 74 74 74 GLU GLU B . n
B 2 75 ALA 75 75 75 ALA ALA B . n
B 2 76 VAL 76 76 76 VAL VAL B . n
B 2 77 PHE 77 77 77 PHE PHE B . n
B 2 78 PRO 78 78 78 PRO PRO B . n
B 2 79 PHE 79 79 79 PHE PHE B . n
B 2 80 GLN 80 80 80 GLN GLN B . n
B 2 81 PRO 81 81 81 PRO PRO B . n
B 2 82 GLY 82 82 82 GLY GLY B . n
B 2 83 SER 83 83 83 SER SER B . n
B 2 84 VAL 84 84 84 VAL VAL B . n
B 2 85 ALA 85 85 85 ALA ALA B . n
B 2 86 GLU 86 86 86 GLU GLU B . n
B 2 87 VAL 87 87 87 VAL VAL B . n
B 2 88 CME 88 88 88 CME CME B . n
B 2 89 ILE 89 89 89 ILE ILE B . n
B 2 90 THR 90 90 90 THR THR B . n
B 2 91 PHE 91 91 91 PHE PHE B . n
B 2 92 ASP 92 92 92 ASP ASP B . n
B 2 93 GLN 93 93 93 GLN GLN B . n
B 2 94 ALA 94 94 94 ALA ALA B . n
B 2 95 ASN 95 95 95 ASN ASN B . n
B 2 96 LEU 96 96 96 LEU LEU B . n
B 2 97 THR 97 97 97 THR THR B . n
B 2 98 VAL 98 98 98 VAL VAL B . n
B 2 99 LYS 99 99 99 LYS LYS B . n
B 2 100 LEU 100 100 100 LEU LEU B . n
B 2 101 PRO 101 101 101 PRO PRO B . n
B 2 102 ASP 102 102 102 ASP ASP B . n
B 2 103 GLY 103 103 103 GLY GLY B . n
B 2 104 TYR 104 104 104 TYR TYR B . n
B 2 105 GLU 105 105 105 GLU GLU B . n
B 2 106 PHE 106 106 106 PHE PHE B . n
B 2 107 LYS 107 107 107 LYS LYS B . n
B 2 108 PHE 108 108 108 PHE PHE B . n
B 2 109 PRO 109 109 109 PRO PRO B . n
B 2 110 ASN 110 110 110 ASN ASN B . n
B 2 111 ARG 111 111 111 ARG ARG B . n
B 2 112 LEU 112 112 112 LEU LEU B . n
B 2 113 ASN 113 113 113 ASN ASN B . n
B 2 114 LEU 114 114 114 LEU LEU B . n
B 2 115 GLU 115 115 115 GLU GLU B . n
B 2 116 ALA 116 116 116 ALA ALA B . n
B 2 117 ILE 117 117 117 ILE ILE B . n
B 2 118 ASN 118 118 118 ASN ASN B . n
B 2 119 TYR 119 119 119 TYR TYR B . n
B 2 120 MET 120 120 120 MET MET B . n
B 2 121 ALA 121 121 121 ALA ALA B . n
B 2 122 ALA 122 122 122 ALA ALA B . n
B 2 123 ASP 123 123 123 ASP ASP B . n
B 2 124 GLY 124 124 124 GLY GLY B . n
B 2 125 ASP 125 125 125 ASP ASP B . n
B 2 126 PHE 126 126 126 PHE PHE B . n
B 2 127 LYS 127 127 127 LYS LYS B . n
B 2 128 ILE 128 128 128 ILE ILE B . n
B 2 129 LYS 129 129 129 LYS LYS B . n
B 2 130 CME 130 130 130 CME CME B . n
B 2 131 VAL 131 131 131 VAL VAL B . n
B 2 132 ALA 132 132 132 ALA ALA B . n
B 2 133 PHE 133 133 133 PHE PHE B . n
B 2 134 ASP 134 134 134 ASP ASP B . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
C 3 YIO 1 E YIO 1 A TDG 600 n
C 3 GAL 2 E GAL 2 A TDG 600 n
D 3 YIO 1 F YIO 1 B TDG 601 n
D 3 GAL 2 F GAL 2 B TDG 601 n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 HOH 1 135 135 HOH HOH A .
E 4 HOH 2 136 136 HOH HOH A .
E 4 HOH 3 137 137 HOH HOH A .
E 4 HOH 4 138 138 HOH HOH A .
E 4 HOH 5 139 139 HOH HOH A .
E 4 HOH 6 140 140 HOH HOH A .
E 4 HOH 7 141 141 HOH HOH A .
E 4 HOH 8 142 142 HOH HOH A .
E 4 HOH 9 143 143 HOH HOH A .
E 4 HOH 10 144 144 HOH HOH A .
E 4 HOH 11 145 145 HOH HOH A .
E 4 HOH 12 146 146 HOH HOH A .
E 4 HOH 13 147 147 HOH HOH A .
E 4 HOH 14 148 148 HOH HOH A .
E 4 HOH 15 149 149 HOH HOH A .
E 4 HOH 16 150 150 HOH HOH A .
E 4 HOH 17 151 151 HOH HOH A .
E 4 HOH 18 152 152 HOH HOH A .
E 4 HOH 19 153 153 HOH HOH A .
E 4 HOH 20 154 154 HOH HOH A .
E 4 HOH 21 155 155 HOH HOH A .
E 4 HOH 22 156 156 HOH HOH A .
E 4 HOH 23 159 159 HOH HOH A .
E 4 HOH 24 160 160 HOH HOH A .
E 4 HOH 25 162 162 HOH HOH A .
E 4 HOH 26 163 163 HOH HOH A .
E 4 HOH 27 164 164 HOH HOH A .
E 4 HOH 28 165 165 HOH HOH A .
F 4 HOH 1 135 135 HOH HOH B .
F 4 HOH 2 136 136 HOH HOH B .
F 4 HOH 3 137 137 HOH HOH B .
F 4 HOH 4 138 138 HOH HOH B .
F 4 HOH 5 139 139 HOH HOH B .
F 4 HOH 6 140 140 HOH HOH B .
F 4 HOH 7 141 141 HOH HOH B .
F 4 HOH 8 142 142 HOH HOH B .
F 4 HOH 9 143 143 HOH HOH B .
F 4 HOH 10 144 144 HOH HOH B .
F 4 HOH 11 145 145 HOH HOH B .
F 4 HOH 12 146 146 HOH HOH B .
F 4 HOH 13 147 147 HOH HOH B .
F 4 HOH 14 148 148 HOH HOH B .
F 4 HOH 15 149 149 HOH HOH B .
F 4 HOH 16 150 150 HOH HOH B .
F 4 HOH 17 151 151 HOH HOH B .
F 4 HOH 18 152 152 HOH HOH B .
F 4 HOH 19 153 153 HOH HOH B .
F 4 HOH 20 154 154 HOH HOH B .
F 4 HOH 21 155 155 HOH HOH B .
F 4 HOH 22 156 156 HOH HOH B .
F 4 HOH 23 157 157 HOH HOH B .
F 4 HOH 24 158 158 HOH HOH B .
F 4 HOH 25 160 160 HOH HOH B .
F 4 HOH 26 161 161 HOH HOH B .
F 4 HOH 27 162 162 HOH HOH B .
F 4 HOH 28 163 163 HOH HOH B .
F 4 HOH 29 164 164 HOH HOH B .
F 4 HOH 30 165 165 HOH HOH B .
F 4 HOH 31 166 166 HOH HOH B .
F 4 HOH 32 167 167 HOH HOH B .
F 4 HOH 33 168 168 HOH HOH B .
F 4 HOH 34 169 169 HOH HOH B .
F 4 HOH 35 170 170 HOH HOH B .
F 4 HOH 36 171 171 HOH HOH B .
F 4 HOH 37 172 161 HOH HOH B .
F 4 HOH 38 173 173 HOH HOH B .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
'PROTEUM PLUS' 'data collection' PLUS ? 1
REFMAC refinement 5.2.0019 ? 2
SAINT 'data reduction' . ? 3
SCALA 'data scaling' . ? 4
#
_cell.entry_id 3OYW
_cell.length_a 44.368
_cell.length_b 58.367
_cell.length_c 111.793
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 4
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 3OYW
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 19
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 3OYW
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.46
_exptl_crystal.density_percent_sol 49.91
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.2
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details
;4-8 microlitre drops consisting of equal volumes of protein solution (20 mM sodium potassium phosphate buffer, pH 7.0, and protein at concentration of 10 mg/mL) and reservoir solution (0.2 M ammonium sulphate, 25% w/v polyethylene glycol 4000, 0.1M sodium acetate trihydrate, pH 6.2), VAPOR DIFFUSION, HANGING DROP, temperature 293K
;
#
_diffrn.id 1
_diffrn.ambient_temp 293
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'BRUKER SMART 6000'
_diffrn_detector.pdbx_collection_date 2008-05-09
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'osmic mirrors'
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type MACSCIENCE
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.5418
#
_reflns.entry_id 3OYW
_reflns.observed_criterion_sigma_I 0.0
_reflns.observed_criterion_sigma_F 0.0
_reflns.d_resolution_low 55.9
_reflns.d_resolution_high 2.5
_reflns.number_obs 10154
_reflns.number_all 10154
_reflns.percent_possible_obs 95.2
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 2.5
_reflns_shell.d_res_low 2.6
_reflns_shell.percent_possible_all 80.8
_reflns_shell.Rmerge_I_obs ?
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs ?
_reflns_shell.pdbx_redundancy ?
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 3OYW
_refine.ls_number_reflns_obs 9645
_refine.ls_number_reflns_all 10154
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 55.90
_refine.ls_d_res_high 2.50
_refine.ls_percent_reflns_obs 95.20
_refine.ls_R_factor_obs 0.17068
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.16701
_refine.ls_R_factor_R_free 0.24492
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.7
_refine.ls_number_reflns_R_free 480
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.956
_refine.correlation_coeff_Fo_to_Fc_free 0.908
_refine.B_iso_mean 27.616
_refine.aniso_B[1][1] 1.96
_refine.aniso_B[2][2] -2.60
_refine.aniso_B[3][3] 0.64
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY'
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.698
_refine.pdbx_overall_ESU_R_Free 0.302
_refine.overall_SU_ML 0.194
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B 8.532
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 2064
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 46
_refine_hist.number_atoms_solvent 66
_refine_hist.number_atoms_total 2176
_refine_hist.d_res_high 2.50
_refine_hist.d_res_low 55.90
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.008 0.022 ? 2185 'X-RAY DIFFRACTION' ?
r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 1.152 1.981 ? 2964 'X-RAY DIFFRACTION' ?
r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 13.181 5.216 ? 278 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg 34.865 25.140 ? 107 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg 15.266 15.000 ? 329 'X-RAY DIFFRACTION' ?
r_dihedral_angle_4_deg 15.692 15.000 ? 11 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.072 0.200 ? 329 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.004 0.021 ? 1679 'X-RAY DIFFRACTION' ?
r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_refined 0.223 0.200 ? 781 'X-RAY DIFFRACTION' ?
r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined 0.319 0.200 ? 1436 'X-RAY DIFFRACTION' ?
r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined 0.168 0.200 ? 104 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 0.202 0.200 ? 30 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 0.183 0.200 ? 7 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_it 1.685 2.000 ? 1346 'X-RAY DIFFRACTION' ?
r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcangle_it 3.147 3.000 ? 2152 'X-RAY DIFFRACTION' ?
r_scbond_it 4.671 4.000 ? 839 'X-RAY DIFFRACTION' ?
r_scangle_it 7.358 6.000 ? 811 'X-RAY DIFFRACTION' ?
r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 2.495
_refine_ls_shell.d_res_low 2.560
_refine_ls_shell.number_reflns_R_work 598
_refine_ls_shell.R_factor_R_work 0.207
_refine_ls_shell.percent_reflns_obs 80.52
_refine_ls_shell.R_factor_R_free 0.379
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 26
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.number_reflns_obs ?
#
_database_PDB_matrix.entry_id 3OYW
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 3OYW
_struct.title 'Crystal structure of human galectin-1 in complex with thiodigalactoside'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3OYW
_struct_keywords.pdbx_keywords 'CARBOHYDRATE BINDING PROTEIN'
_struct_keywords.text 'Carbohydrate binding protein, Galectin, Lactobionic acid'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 3 ?
E N N 4 ?
F N N 4 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_db_isoform
1 UNP LEG1_HUMAN P09382 1
;ACGLVASNLNLKPGECLRVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDGGAWGTEQREAVFPFQ
PGSVAEVCITFDQANLTVKLPDGYEFKFPNRLNLEAINYMAADGDFKIKCVAFD
;
2 ?
2 UNP LEG1_HUMAN P09382 2
;ACGLVASNLNLKPGECLRVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDGGAWGTEQREAVFPFQ
PGSVAEVCITFDQANLTVKLPDGYEFKFPNRLNLEAINYMAADGDFKIKCVAFD
;
2 ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 3OYW A 1 ? 134 ? P09382 2 ? 135 ? 1 134
2 2 3OYW B 1 ? 134 ? P09382 2 ? 135 ? 1 134
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 PRO A 101 ? GLY A 103 ? PRO A 101 GLY A 103 5 ? 3
HELX_P HELX_P2 2 PRO B 101 ? GLY B 103 ? PRO B 101 GLY B 103 5 ? 3
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A GLU 15 C ? ? ? 1_555 A CSO 16 N ? ? A GLU 15 A CSO 16 1_555 ? ? ? ? ? ? ? 1.326 ? ?
covale2 covale both ? A CSO 16 C ? ? ? 1_555 A LEU 17 N ? ? A CSO 16 A LEU 17 1_555 ? ? ? ? ? ? ? 1.329 ? ?
covale3 covale both ? A VAL 87 C ? ? ? 1_555 A CSO 88 N ? ? A VAL 87 A CSO 88 1_555 ? ? ? ? ? ? ? 1.327 ? ?
covale4 covale both ? A CSO 88 C ? ? ? 1_555 A ILE 89 N ? ? A CSO 88 A ILE 89 1_555 ? ? ? ? ? ? ? 1.330 ? ?
covale5 covale both ? A LYS 129 C ? ? ? 1_555 A CME 130 N ? ? A LYS 129 A CME 130 1_555 ? ? ? ? ? ? ? 1.335 ? ?
covale6 covale both ? A CME 130 C ? ? ? 1_555 A VAL 131 N ? ? A CME 130 A VAL 131 1_555 ? ? ? ? ? ? ? 1.326 ? ?
covale7 covale both ? B GLU 15 C ? ? ? 1_555 B CSO 16 N ? ? B GLU 15 B CSO 16 1_555 ? ? ? ? ? ? ? 1.319 ? ?
covale8 covale both ? B CSO 16 C ? ? ? 1_555 B LEU 17 N ? ? B CSO 16 B LEU 17 1_555 ? ? ? ? ? ? ? 1.332 ? ?
covale9 covale both ? B VAL 87 C ? ? ? 1_555 B CME 88 N ? ? B VAL 87 B CME 88 1_555 ? ? ? ? ? ? ? 1.333 ? ?
covale10 covale both ? B CME 88 C ? ? ? 1_555 B ILE 89 N ? ? B CME 88 B ILE 89 1_555 ? ? ? ? ? ? ? 1.326 ? ?
covale11 covale both ? B LYS 129 C ? ? ? 1_555 B CME 130 N ? ? B LYS 129 B CME 130 1_555 ? ? ? ? ? ? ? 1.328 ? ?
covale12 covale both ? B CME 130 C ? ? ? 1_555 B VAL 131 N ? ? B CME 130 B VAL 131 1_555 ? ? ? ? ? ? ? 1.328 ? ?
covale13 covale one ? C YIO . S1 ? ? ? 1_555 C GAL . C1 ? ? E YIO 1 E GAL 2 1_555 ? ? ? ? ? ? ? 1.771 sing ?
covale14 covale one ? D YIO . S1 ? ? ? 1_555 D GAL . C1 ? ? F YIO 1 F GAL 2 1_555 ? ? ? ? ? ? ? 1.766 sing ?
#
_struct_conn_type.id covale
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 CSO A 16 ? . . . . CSO A 16 ? 1_555 . . . . . . . CYS 1 CSO Hydroxylation 'Named protein modification'
2 CSO A 88 ? . . . . CSO A 88 ? 1_555 . . . . . . . CYS 1 CSO Hydroxylation 'Named protein modification'
3 CME A 130 ? . . . . CME A 130 ? 1_555 . . . . . . . CYS 1 CME Beta-mercaptoethanol 'Named protein modification'
4 CSO B 16 ? . . . . CSO B 16 ? 1_555 . . . . . . . CYS 1 CSO Hydroxylation 'Named protein modification'
5 CME B 88 ? . . . . CME B 88 ? 1_555 . . . . . . . CYS 1 CME Beta-mercaptoethanol 'Named protein modification'
6 CME B 130 ? . . . . CME B 130 ? 1_555 . . . . . . . CYS 1 CME Beta-mercaptoethanol 'Named protein modification'
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 12 ?
B ? 12 ?
C ? 10 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? anti-parallel
A 3 4 ? anti-parallel
A 4 5 ? anti-parallel
A 5 6 ? anti-parallel
A 6 7 ? anti-parallel
A 7 8 ? anti-parallel
A 8 9 ? anti-parallel
A 9 10 ? anti-parallel
A 10 11 ? anti-parallel
A 11 12 ? anti-parallel
B 1 2 ? anti-parallel
B 2 3 ? anti-parallel
B 3 4 ? anti-parallel
B 4 5 ? anti-parallel
B 5 6 ? anti-parallel
B 6 7 ? anti-parallel
B 7 8 ? anti-parallel
B 8 9 ? anti-parallel
B 9 10 ? anti-parallel
B 10 11 ? anti-parallel
B 11 12 ? anti-parallel
C 1 2 ? anti-parallel
C 2 3 ? anti-parallel
C 3 4 ? anti-parallel
C 4 5 ? anti-parallel
C 5 6 ? anti-parallel
C 6 7 ? anti-parallel
C 7 8 ? anti-parallel
C 8 9 ? anti-parallel
C 9 10 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 ALA A 67 ? TRP A 68 ? ALA A 67 TRP A 68
A 2 ASP A 54 ? ASP A 64 ? ASP A 54 ASP A 64
A 3 ASN A 40 ? ALA A 51 ? ASN A 40 ALA A 51
A 4 PHE A 30 ? ASP A 37 ? PHE A 30 ASP A 37
A 5 ILE A 117 ? GLY A 124 ? ILE A 117 GLY A 124
A 6 VAL A 5 ? LEU A 11 ? VAL A 5 LEU A 11
A 7 VAL B 5 ? LEU B 11 ? VAL B 5 LEU B 11
A 8 ILE B 117 ? GLY B 124 ? ILE B 117 GLY B 124
A 9 PHE B 30 ? ASP B 37 ? PHE B 30 ASP B 37
A 10 ASN B 40 ? ALA B 51 ? ASN B 40 ALA B 51
A 11 ASP B 54 ? ASP B 64 ? ASP B 54 ASP B 64
A 12 ALA B 67 ? TRP B 68 ? ALA B 67 TRP B 68
B 1 GLN A 72 ? ARG A 73 ? GLN A 72 ARG A 73
B 2 ASP A 54 ? ASP A 64 ? ASP A 54 ASP A 64
B 3 ASN A 40 ? ALA A 51 ? ASN A 40 ALA A 51
B 4 PHE A 30 ? ASP A 37 ? PHE A 30 ASP A 37
B 5 ILE A 117 ? GLY A 124 ? ILE A 117 GLY A 124
B 6 VAL A 5 ? LEU A 11 ? VAL A 5 LEU A 11
B 7 VAL B 5 ? LEU B 11 ? VAL B 5 LEU B 11
B 8 ILE B 117 ? GLY B 124 ? ILE B 117 GLY B 124
B 9 PHE B 30 ? ASP B 37 ? PHE B 30 ASP B 37
B 10 ASN B 40 ? ALA B 51 ? ASN B 40 ALA B 51
B 11 ASP B 54 ? ASP B 64 ? ASP B 54 ASP B 64
B 12 GLN B 72 ? ARG B 73 ? GLN B 72 ARG B 73
C 1 GLU A 105 ? PRO A 109 ? GLU A 105 PRO A 109
C 2 ASN A 95 ? LYS A 99 ? ASN A 95 LYS A 99
C 3 VAL A 84 ? PHE A 91 ? VAL A 84 PHE A 91
C 4 CSO A 16 ? VAL A 23 ? CSO A 16 VAL A 23
C 5 PHE A 126 ? PHE A 133 ? PHE A 126 PHE A 133
C 6 PHE B 126 ? PHE B 133 ? PHE B 126 PHE B 133
C 7 LEU B 17 ? VAL B 23 ? LEU B 17 VAL B 23
C 8 VAL B 84 ? PHE B 91 ? VAL B 84 PHE B 91
C 9 ASN B 95 ? LYS B 99 ? ASN B 95 LYS B 99
C 10 GLU B 105 ? PRO B 109 ? GLU B 105 PRO B 109
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 O ALA A 67 ? O ALA A 67 N ASP A 64 ? N ASP A 64
A 2 3 O THR A 57 ? O THR A 57 N ARG A 48 ? N ARG A 48
A 3 4 O PHE A 45 ? O PHE A 45 N LEU A 32 ? N LEU A 32
A 4 5 N VAL A 31 ? N VAL A 31 O ASP A 123 ? O ASP A 123
A 5 6 O MET A 120 ? O MET A 120 N ALA A 6 ? N ALA A 6
A 6 7 N SER A 7 ? N SER A 7 O VAL B 5 ? O VAL B 5
A 7 8 N ALA B 6 ? N ALA B 6 O MET B 120 ? O MET B 120
A 8 9 O ALA B 121 ? O ALA B 121 N ASN B 33 ? N ASN B 33
A 9 10 N LEU B 32 ? N LEU B 32 O PHE B 45 ? O PHE B 45
A 10 11 N ARG B 48 ? N ARG B 48 O THR B 57 ? O THR B 57
A 11 12 N ASP B 64 ? N ASP B 64 O ALA B 67 ? O ALA B 67
B 1 2 O GLN A 72 ? O GLN A 72 N CYS A 60 ? N CYS A 60
B 2 3 O THR A 57 ? O THR A 57 N ARG A 48 ? N ARG A 48
B 3 4 O PHE A 45 ? O PHE A 45 N LEU A 32 ? N LEU A 32
B 4 5 N VAL A 31 ? N VAL A 31 O ASP A 123 ? O ASP A 123
B 5 6 O MET A 120 ? O MET A 120 N ALA A 6 ? N ALA A 6
B 6 7 N SER A 7 ? N SER A 7 O VAL B 5 ? O VAL B 5
B 7 8 N ALA B 6 ? N ALA B 6 O MET B 120 ? O MET B 120
B 8 9 O ALA B 121 ? O ALA B 121 N ASN B 33 ? N ASN B 33
B 9 10 N LEU B 32 ? N LEU B 32 O PHE B 45 ? O PHE B 45
B 10 11 N ARG B 48 ? N ARG B 48 O THR B 57 ? O THR B 57
B 11 12 N CYS B 60 ? N CYS B 60 O GLN B 72 ? O GLN B 72
C 1 2 O PHE A 108 ? O PHE A 108 N LEU A 96 ? N LEU A 96
C 2 3 O THR A 97 ? O THR A 97 N THR A 90 ? N THR A 90
C 3 4 O ILE A 89 ? O ILE A 89 N LEU A 17 ? N LEU A 17
C 4 5 N ARG A 20 ? N ARG A 20 O LYS A 129 ? O LYS A 129
C 5 6 N LYS A 129 ? N LYS A 129 O PHE B 133 ? O PHE B 133
C 6 7 O ALA B 132 ? O ALA B 132 N ARG B 18 ? N ARG B 18
C 7 8 N LEU B 17 ? N LEU B 17 O ILE B 89 ? O ILE B 89
C 8 9 N CME B 88 ? N CME B 88 O LYS B 99 ? O LYS B 99
C 9 10 N LEU B 96 ? N LEU B 96 O PHE B 108 ? O PHE B 108
#
_pdbx_entry_details.entry_id 3OYW
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 PRO A 78 ? ? -88.10 38.75
2 1 ASN A 113 ? ? -104.19 73.30
3 1 ASP A 125 ? ? -91.44 51.41
4 1 CYS B 2 ? ? -150.49 -43.53
5 1 ASP B 26 ? ? -108.16 43.04
6 1 ASN B 50 ? ? -164.26 89.89
#
_pdbx_molecule_features.prd_id PRD_900027
_pdbx_molecule_features.name thiodigalactoside
_pdbx_molecule_features.type Oligosaccharide
_pdbx_molecule_features.class 'Substrate analog'
_pdbx_molecule_features.details
'oligosaccharide with S-glycosidic bond between monosaccharides, and with reducing-end-to-reducing-end glycosidic bond'
#
loop_
_pdbx_molecule.instance_id
_pdbx_molecule.prd_id
_pdbx_molecule.asym_id
1 PRD_900027 C
2 PRD_900027 D
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A CSO 16 A CSO 16 ? CYS S-HYDROXYCYSTEINE
2 A CSO 88 A CSO 88 ? CYS S-HYDROXYCYSTEINE
3 A CME 130 A CME 130 ? CYS 'S,S-(2-HYDROXYETHYL)THIOCYSTEINE'
4 B CSO 16 B CSO 16 ? CYS S-HYDROXYCYSTEINE
5 B CME 88 B CME 88 ? CYS 'S,S-(2-HYDROXYETHYL)THIOCYSTEINE'
6 B CME 130 B CME 130 ? CYS 'S,S-(2-HYDROXYETHYL)THIOCYSTEINE'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
CME N N N N 74
CME CA C N R 75
CME CB C N N 76
CME SG S N N 77
CME SD S N N 78
CME CE C N N 79
CME CZ C N N 80
CME OH O N N 81
CME C C N N 82
CME O O N N 83
CME OXT O N N 84
CME H H N N 85
CME H2 H N N 86
CME HA H N N 87
CME HB2 H N N 88
CME HB3 H N N 89
CME HE2 H N N 90
CME HE3 H N N 91
CME HZ2 H N N 92
CME HZ3 H N N 93
CME HH H N N 94
CME HXT H N N 95
CSO N N N N 96
CSO CA C N R 97
CSO CB C N N 98
CSO SG S N N 99
CSO C C N N 100
CSO O O N N 101
CSO OXT O N N 102
CSO OD O N N 103
CSO H H N N 104
CSO H2 H N N 105
CSO HA H N N 106
CSO HB2 H N N 107
CSO HB3 H N N 108
CSO HXT H N N 109
CSO HD H N N 110
CYS N N N N 111
CYS CA C N R 112
CYS C C N N 113
CYS O O N N 114
CYS CB C N N 115
CYS SG S N N 116
CYS OXT O N N 117
CYS H H N N 118
CYS H2 H N N 119
CYS HA H N N 120
CYS HB2 H N N 121
CYS HB3 H N N 122
CYS HG H N N 123
CYS HXT H N N 124
GAL C1 C N R 125
GAL C2 C N R 126
GAL C3 C N S 127
GAL C4 C N R 128
GAL C5 C N R 129
GAL C6 C N N 130
GAL O1 O N N 131
GAL O2 O N N 132
GAL O3 O N N 133
GAL O4 O N N 134
GAL O5 O N N 135
GAL O6 O N N 136
GAL H1 H N N 137
GAL H2 H N N 138
GAL H3 H N N 139
GAL H4 H N N 140
GAL H5 H N N 141
GAL H61 H N N 142
GAL H62 H N N 143
GAL HO1 H N N 144
GAL HO2 H N N 145
GAL HO3 H N N 146
GAL HO4 H N N 147
GAL HO6 H N N 148
GLN N N N N 149
GLN CA C N S 150
GLN C C N N 151
GLN O O N N 152
GLN CB C N N 153
GLN CG C N N 154
GLN CD C N N 155
GLN OE1 O N N 156
GLN NE2 N N N 157
GLN OXT O N N 158
GLN H H N N 159
GLN H2 H N N 160
GLN HA H N N 161
GLN HB2 H N N 162
GLN HB3 H N N 163
GLN HG2 H N N 164
GLN HG3 H N N 165
GLN HE21 H N N 166
GLN HE22 H N N 167
GLN HXT H N N 168
GLU N N N N 169
GLU CA C N S 170
GLU C C N N 171
GLU O O N N 172
GLU CB C N N 173
GLU CG C N N 174
GLU CD C N N 175
GLU OE1 O N N 176
GLU OE2 O N N 177
GLU OXT O N N 178
GLU H H N N 179
GLU H2 H N N 180
GLU HA H N N 181
GLU HB2 H N N 182
GLU HB3 H N N 183
GLU HG2 H N N 184
GLU HG3 H N N 185
GLU HE2 H N N 186
GLU HXT H N N 187
GLY N N N N 188
GLY CA C N N 189
GLY C C N N 190
GLY O O N N 191
GLY OXT O N N 192
GLY H H N N 193
GLY H2 H N N 194
GLY HA2 H N N 195
GLY HA3 H N N 196
GLY HXT H N N 197
HIS N N N N 198
HIS CA C N S 199
HIS C C N N 200
HIS O O N N 201
HIS CB C N N 202
HIS CG C Y N 203
HIS ND1 N Y N 204
HIS CD2 C Y N 205
HIS CE1 C Y N 206
HIS NE2 N Y N 207
HIS OXT O N N 208
HIS H H N N 209
HIS H2 H N N 210
HIS HA H N N 211
HIS HB2 H N N 212
HIS HB3 H N N 213
HIS HD1 H N N 214
HIS HD2 H N N 215
HIS HE1 H N N 216
HIS HE2 H N N 217
HIS HXT H N N 218
HOH O O N N 219
HOH H1 H N N 220
HOH H2 H N N 221
ILE N N N N 222
ILE CA C N S 223
ILE C C N N 224
ILE O O N N 225
ILE CB C N S 226
ILE CG1 C N N 227
ILE CG2 C N N 228
ILE CD1 C N N 229
ILE OXT O N N 230
ILE H H N N 231
ILE H2 H N N 232
ILE HA H N N 233
ILE HB H N N 234
ILE HG12 H N N 235
ILE HG13 H N N 236
ILE HG21 H N N 237
ILE HG22 H N N 238
ILE HG23 H N N 239
ILE HD11 H N N 240
ILE HD12 H N N 241
ILE HD13 H N N 242
ILE HXT H N N 243
LEU N N N N 244
LEU CA C N S 245
LEU C C N N 246
LEU O O N N 247
LEU CB C N N 248
LEU CG C N N 249
LEU CD1 C N N 250
LEU CD2 C N N 251
LEU OXT O N N 252
LEU H H N N 253
LEU H2 H N N 254
LEU HA H N N 255
LEU HB2 H N N 256
LEU HB3 H N N 257
LEU HG H N N 258
LEU HD11 H N N 259
LEU HD12 H N N 260
LEU HD13 H N N 261
LEU HD21 H N N 262
LEU HD22 H N N 263
LEU HD23 H N N 264
LEU HXT H N N 265
LYS N N N N 266
LYS CA C N S 267
LYS C C N N 268
LYS O O N N 269
LYS CB C N N 270
LYS CG C N N 271
LYS CD C N N 272
LYS CE C N N 273
LYS NZ N N N 274
LYS OXT O N N 275
LYS H H N N 276
LYS H2 H N N 277
LYS HA H N N 278
LYS HB2 H N N 279
LYS HB3 H N N 280
LYS HG2 H N N 281
LYS HG3 H N N 282
LYS HD2 H N N 283
LYS HD3 H N N 284
LYS HE2 H N N 285
LYS HE3 H N N 286
LYS HZ1 H N N 287
LYS HZ2 H N N 288
LYS HZ3 H N N 289
LYS HXT H N N 290
MET N N N N 291
MET CA C N S 292
MET C C N N 293
MET O O N N 294
MET CB C N N 295
MET CG C N N 296
MET SD S N N 297
MET CE C N N 298
MET OXT O N N 299
MET H H N N 300
MET H2 H N N 301
MET HA H N N 302
MET HB2 H N N 303
MET HB3 H N N 304
MET HG2 H N N 305
MET HG3 H N N 306
MET HE1 H N N 307
MET HE2 H N N 308
MET HE3 H N N 309
MET HXT H N N 310
PHE N N N N 311
PHE CA C N S 312
PHE C C N N 313
PHE O O N N 314
PHE CB C N N 315
PHE CG C Y N 316
PHE CD1 C Y N 317
PHE CD2 C Y N 318
PHE CE1 C Y N 319
PHE CE2 C Y N 320
PHE CZ C Y N 321
PHE OXT O N N 322
PHE H H N N 323
PHE H2 H N N 324
PHE HA H N N 325
PHE HB2 H N N 326
PHE HB3 H N N 327
PHE HD1 H N N 328
PHE HD2 H N N 329
PHE HE1 H N N 330
PHE HE2 H N N 331
PHE HZ H N N 332
PHE HXT H N N 333
PRO N N N N 334
PRO CA C N S 335
PRO C C N N 336
PRO O O N N 337
PRO CB C N N 338
PRO CG C N N 339
PRO CD C N N 340
PRO OXT O N N 341
PRO H H N N 342
PRO HA H N N 343
PRO HB2 H N N 344
PRO HB3 H N N 345
PRO HG2 H N N 346
PRO HG3 H N N 347
PRO HD2 H N N 348
PRO HD3 H N N 349
PRO HXT H N N 350
SER N N N N 351
SER CA C N S 352
SER C C N N 353
SER O O N N 354
SER CB C N N 355
SER OG O N N 356
SER OXT O N N 357
SER H H N N 358
SER H2 H N N 359
SER HA H N N 360
SER HB2 H N N 361
SER HB3 H N N 362
SER HG H N N 363
SER HXT H N N 364
THR N N N N 365
THR CA C N S 366
THR C C N N 367
THR O O N N 368
THR CB C N R 369
THR OG1 O N N 370
THR CG2 C N N 371
THR OXT O N N 372
THR H H N N 373
THR H2 H N N 374
THR HA H N N 375
THR HB H N N 376
THR HG1 H N N 377
THR HG21 H N N 378
THR HG22 H N N 379
THR HG23 H N N 380
THR HXT H N N 381
TRP N N N N 382
TRP CA C N S 383
TRP C C N N 384
TRP O O N N 385
TRP CB C N N 386
TRP CG C Y N 387
TRP CD1 C Y N 388
TRP CD2 C Y N 389
TRP NE1 N Y N 390
TRP CE2 C Y N 391
TRP CE3 C Y N 392
TRP CZ2 C Y N 393
TRP CZ3 C Y N 394
TRP CH2 C Y N 395
TRP OXT O N N 396
TRP H H N N 397
TRP H2 H N N 398
TRP HA H N N 399
TRP HB2 H N N 400
TRP HB3 H N N 401
TRP HD1 H N N 402
TRP HE1 H N N 403
TRP HE3 H N N 404
TRP HZ2 H N N 405
TRP HZ3 H N N 406
TRP HH2 H N N 407
TRP HXT H N N 408
TYR N N N N 409
TYR CA C N S 410
TYR C C N N 411
TYR O O N N 412
TYR CB C N N 413
TYR CG C Y N 414
TYR CD1 C Y N 415
TYR CD2 C Y N 416
TYR CE1 C Y N 417
TYR CE2 C Y N 418
TYR CZ C Y N 419
TYR OH O N N 420
TYR OXT O N N 421
TYR H H N N 422
TYR H2 H N N 423
TYR HA H N N 424
TYR HB2 H N N 425
TYR HB3 H N N 426
TYR HD1 H N N 427
TYR HD2 H N N 428
TYR HE1 H N N 429
TYR HE2 H N N 430
TYR HH H N N 431
TYR HXT H N N 432
VAL N N N N 433
VAL CA C N S 434
VAL C C N N 435
VAL O O N N 436
VAL CB C N N 437
VAL CG1 C N N 438
VAL CG2 C N N 439
VAL OXT O N N 440
VAL H H N N 441
VAL H2 H N N 442
VAL HA H N N 443
VAL HB H N N 444
VAL HG11 H N N 445
VAL HG12 H N N 446
VAL HG13 H N N 447
VAL HG21 H N N 448
VAL HG22 H N N 449
VAL HG23 H N N 450
VAL HXT H N N 451
YIO C1 C N S 452
YIO C2 C N R 453
YIO C3 C N S 454
YIO C4 C N R 455
YIO C5 C N R 456
YIO C6 C N N 457
YIO O2 O N N 458
YIO O3 O N N 459
YIO O4 O N N 460
YIO O5 O N N 461
YIO O6 O N N 462
YIO S1 S N N 463
YIO H1 H N N 464
YIO H2 H N N 465
YIO H3 H N N 466
YIO HO2 H N N 467
YIO H4 H N N 468
YIO HO3 H N N 469
YIO H5 H N N 470
YIO HO4 H N N 471
YIO H61 H N N 472
YIO H62 H N N 473
YIO HO6 H N N 474
YIO HS1 H N N 475
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
CME N CA sing N N 70
CME N H sing N N 71
CME N H2 sing N N 72
CME CA CB sing N N 73
CME CA C sing N N 74
CME CA HA sing N N 75
CME CB SG sing N N 76
CME CB HB2 sing N N 77
CME CB HB3 sing N N 78
CME SG SD sing N N 79
CME SD CE sing N N 80
CME CE CZ sing N N 81
CME CE HE2 sing N N 82
CME CE HE3 sing N N 83
CME CZ OH sing N N 84
CME CZ HZ2 sing N N 85
CME CZ HZ3 sing N N 86
CME OH HH sing N N 87
CME C O doub N N 88
CME C OXT sing N N 89
CME OXT HXT sing N N 90
CSO N CA sing N N 91
CSO N H sing N N 92
CSO N H2 sing N N 93
CSO CA CB sing N N 94
CSO CA C sing N N 95
CSO CA HA sing N N 96
CSO CB SG sing N N 97
CSO CB HB2 sing N N 98
CSO CB HB3 sing N N 99
CSO SG OD sing N N 100
CSO C O doub N N 101
CSO C OXT sing N N 102
CSO OXT HXT sing N N 103
CSO OD HD sing N N 104
CYS N CA sing N N 105
CYS N H sing N N 106
CYS N H2 sing N N 107
CYS CA C sing N N 108
CYS CA CB sing N N 109
CYS CA HA sing N N 110
CYS C O doub N N 111
CYS C OXT sing N N 112
CYS CB SG sing N N 113
CYS CB HB2 sing N N 114
CYS CB HB3 sing N N 115
CYS SG HG sing N N 116
CYS OXT HXT sing N N 117
GAL C1 C2 sing N N 118
GAL C1 O1 sing N N 119
GAL C1 O5 sing N N 120
GAL C1 H1 sing N N 121
GAL C2 C3 sing N N 122
GAL C2 O2 sing N N 123
GAL C2 H2 sing N N 124
GAL C3 C4 sing N N 125
GAL C3 O3 sing N N 126
GAL C3 H3 sing N N 127
GAL C4 C5 sing N N 128
GAL C4 O4 sing N N 129
GAL C4 H4 sing N N 130
GAL C5 C6 sing N N 131
GAL C5 O5 sing N N 132
GAL C5 H5 sing N N 133
GAL C6 O6 sing N N 134
GAL C6 H61 sing N N 135
GAL C6 H62 sing N N 136
GAL O1 HO1 sing N N 137
GAL O2 HO2 sing N N 138
GAL O3 HO3 sing N N 139
GAL O4 HO4 sing N N 140
GAL O6 HO6 sing N N 141
GLN N CA sing N N 142
GLN N H sing N N 143
GLN N H2 sing N N 144
GLN CA C sing N N 145
GLN CA CB sing N N 146
GLN CA HA sing N N 147
GLN C O doub N N 148
GLN C OXT sing N N 149
GLN CB CG sing N N 150
GLN CB HB2 sing N N 151
GLN CB HB3 sing N N 152
GLN CG CD sing N N 153
GLN CG HG2 sing N N 154
GLN CG HG3 sing N N 155
GLN CD OE1 doub N N 156
GLN CD NE2 sing N N 157
GLN NE2 HE21 sing N N 158
GLN NE2 HE22 sing N N 159
GLN OXT HXT sing N N 160
GLU N CA sing N N 161
GLU N H sing N N 162
GLU N H2 sing N N 163
GLU CA C sing N N 164
GLU CA CB sing N N 165
GLU CA HA sing N N 166
GLU C O doub N N 167
GLU C OXT sing N N 168
GLU CB CG sing N N 169
GLU CB HB2 sing N N 170
GLU CB HB3 sing N N 171
GLU CG CD sing N N 172
GLU CG HG2 sing N N 173
GLU CG HG3 sing N N 174
GLU CD OE1 doub N N 175
GLU CD OE2 sing N N 176
GLU OE2 HE2 sing N N 177
GLU OXT HXT sing N N 178
GLY N CA sing N N 179
GLY N H sing N N 180
GLY N H2 sing N N 181
GLY CA C sing N N 182
GLY CA HA2 sing N N 183
GLY CA HA3 sing N N 184
GLY C O doub N N 185
GLY C OXT sing N N 186
GLY OXT HXT sing N N 187
HIS N CA sing N N 188
HIS N H sing N N 189
HIS N H2 sing N N 190
HIS CA C sing N N 191
HIS CA CB sing N N 192
HIS CA HA sing N N 193
HIS C O doub N N 194
HIS C OXT sing N N 195
HIS CB CG sing N N 196
HIS CB HB2 sing N N 197
HIS CB HB3 sing N N 198
HIS CG ND1 sing Y N 199
HIS CG CD2 doub Y N 200
HIS ND1 CE1 doub Y N 201
HIS ND1 HD1 sing N N 202
HIS CD2 NE2 sing Y N 203
HIS CD2 HD2 sing N N 204
HIS CE1 NE2 sing Y N 205
HIS CE1 HE1 sing N N 206
HIS NE2 HE2 sing N N 207
HIS OXT HXT sing N N 208
HOH O H1 sing N N 209
HOH O H2 sing N N 210
ILE N CA sing N N 211
ILE N H sing N N 212
ILE N H2 sing N N 213
ILE CA C sing N N 214
ILE CA CB sing N N 215
ILE CA HA sing N N 216
ILE C O doub N N 217
ILE C OXT sing N N 218
ILE CB CG1 sing N N 219
ILE CB CG2 sing N N 220
ILE CB HB sing N N 221
ILE CG1 CD1 sing N N 222
ILE CG1 HG12 sing N N 223
ILE CG1 HG13 sing N N 224
ILE CG2 HG21 sing N N 225
ILE CG2 HG22 sing N N 226
ILE CG2 HG23 sing N N 227
ILE CD1 HD11 sing N N 228
ILE CD1 HD12 sing N N 229
ILE CD1 HD13 sing N N 230
ILE OXT HXT sing N N 231
LEU N CA sing N N 232
LEU N H sing N N 233
LEU N H2 sing N N 234
LEU CA C sing N N 235
LEU CA CB sing N N 236
LEU CA HA sing N N 237
LEU C O doub N N 238
LEU C OXT sing N N 239
LEU CB CG sing N N 240
LEU CB HB2 sing N N 241
LEU CB HB3 sing N N 242
LEU CG CD1 sing N N 243
LEU CG CD2 sing N N 244
LEU CG HG sing N N 245
LEU CD1 HD11 sing N N 246
LEU CD1 HD12 sing N N 247
LEU CD1 HD13 sing N N 248
LEU CD2 HD21 sing N N 249
LEU CD2 HD22 sing N N 250
LEU CD2 HD23 sing N N 251
LEU OXT HXT sing N N 252
LYS N CA sing N N 253
LYS N H sing N N 254
LYS N H2 sing N N 255
LYS CA C sing N N 256
LYS CA CB sing N N 257
LYS CA HA sing N N 258
LYS C O doub N N 259
LYS C OXT sing N N 260
LYS CB CG sing N N 261
LYS CB HB2 sing N N 262
LYS CB HB3 sing N N 263
LYS CG CD sing N N 264
LYS CG HG2 sing N N 265
LYS CG HG3 sing N N 266
LYS CD CE sing N N 267
LYS CD HD2 sing N N 268
LYS CD HD3 sing N N 269
LYS CE NZ sing N N 270
LYS CE HE2 sing N N 271
LYS CE HE3 sing N N 272
LYS NZ HZ1 sing N N 273
LYS NZ HZ2 sing N N 274
LYS NZ HZ3 sing N N 275
LYS OXT HXT sing N N 276
MET N CA sing N N 277
MET N H sing N N 278
MET N H2 sing N N 279
MET CA C sing N N 280
MET CA CB sing N N 281
MET CA HA sing N N 282
MET C O doub N N 283
MET C OXT sing N N 284
MET CB CG sing N N 285
MET CB HB2 sing N N 286
MET CB HB3 sing N N 287
MET CG SD sing N N 288
MET CG HG2 sing N N 289
MET CG HG3 sing N N 290
MET SD CE sing N N 291
MET CE HE1 sing N N 292
MET CE HE2 sing N N 293
MET CE HE3 sing N N 294
MET OXT HXT sing N N 295
PHE N CA sing N N 296
PHE N H sing N N 297
PHE N H2 sing N N 298
PHE CA C sing N N 299
PHE CA CB sing N N 300
PHE CA HA sing N N 301
PHE C O doub N N 302
PHE C OXT sing N N 303
PHE CB CG sing N N 304
PHE CB HB2 sing N N 305
PHE CB HB3 sing N N 306
PHE CG CD1 doub Y N 307
PHE CG CD2 sing Y N 308
PHE CD1 CE1 sing Y N 309
PHE CD1 HD1 sing N N 310
PHE CD2 CE2 doub Y N 311
PHE CD2 HD2 sing N N 312
PHE CE1 CZ doub Y N 313
PHE CE1 HE1 sing N N 314
PHE CE2 CZ sing Y N 315
PHE CE2 HE2 sing N N 316
PHE CZ HZ sing N N 317
PHE OXT HXT sing N N 318
PRO N CA sing N N 319
PRO N CD sing N N 320
PRO N H sing N N 321
PRO CA C sing N N 322
PRO CA CB sing N N 323
PRO CA HA sing N N 324
PRO C O doub N N 325
PRO C OXT sing N N 326
PRO CB CG sing N N 327
PRO CB HB2 sing N N 328
PRO CB HB3 sing N N 329
PRO CG CD sing N N 330
PRO CG HG2 sing N N 331
PRO CG HG3 sing N N 332
PRO CD HD2 sing N N 333
PRO CD HD3 sing N N 334
PRO OXT HXT sing N N 335
SER N CA sing N N 336
SER N H sing N N 337
SER N H2 sing N N 338
SER CA C sing N N 339
SER CA CB sing N N 340
SER CA HA sing N N 341
SER C O doub N N 342
SER C OXT sing N N 343
SER CB OG sing N N 344
SER CB HB2 sing N N 345
SER CB HB3 sing N N 346
SER OG HG sing N N 347
SER OXT HXT sing N N 348
THR N CA sing N N 349
THR N H sing N N 350
THR N H2 sing N N 351
THR CA C sing N N 352
THR CA CB sing N N 353
THR CA HA sing N N 354
THR C O doub N N 355
THR C OXT sing N N 356
THR CB OG1 sing N N 357
THR CB CG2 sing N N 358
THR CB HB sing N N 359
THR OG1 HG1 sing N N 360
THR CG2 HG21 sing N N 361
THR CG2 HG22 sing N N 362
THR CG2 HG23 sing N N 363
THR OXT HXT sing N N 364
TRP N CA sing N N 365
TRP N H sing N N 366
TRP N H2 sing N N 367
TRP CA C sing N N 368
TRP CA CB sing N N 369
TRP CA HA sing N N 370
TRP C O doub N N 371
TRP C OXT sing N N 372
TRP CB CG sing N N 373
TRP CB HB2 sing N N 374
TRP CB HB3 sing N N 375
TRP CG CD1 doub Y N 376
TRP CG CD2 sing Y N 377
TRP CD1 NE1 sing Y N 378
TRP CD1 HD1 sing N N 379
TRP CD2 CE2 doub Y N 380
TRP CD2 CE3 sing Y N 381
TRP NE1 CE2 sing Y N 382
TRP NE1 HE1 sing N N 383
TRP CE2 CZ2 sing Y N 384
TRP CE3 CZ3 doub Y N 385
TRP CE3 HE3 sing N N 386
TRP CZ2 CH2 doub Y N 387
TRP CZ2 HZ2 sing N N 388
TRP CZ3 CH2 sing Y N 389
TRP CZ3 HZ3 sing N N 390
TRP CH2 HH2 sing N N 391
TRP OXT HXT sing N N 392
TYR N CA sing N N 393
TYR N H sing N N 394
TYR N H2 sing N N 395
TYR CA C sing N N 396
TYR CA CB sing N N 397
TYR CA HA sing N N 398
TYR C O doub N N 399
TYR C OXT sing N N 400
TYR CB CG sing N N 401
TYR CB HB2 sing N N 402
TYR CB HB3 sing N N 403
TYR CG CD1 doub Y N 404
TYR CG CD2 sing Y N 405
TYR CD1 CE1 sing Y N 406
TYR CD1 HD1 sing N N 407
TYR CD2 CE2 doub Y N 408
TYR CD2 HD2 sing N N 409
TYR CE1 CZ doub Y N 410
TYR CE1 HE1 sing N N 411
TYR CE2 CZ sing Y N 412
TYR CE2 HE2 sing N N 413
TYR CZ OH sing N N 414
TYR OH HH sing N N 415
TYR OXT HXT sing N N 416
VAL N CA sing N N 417
VAL N H sing N N 418
VAL N H2 sing N N 419
VAL CA C sing N N 420
VAL CA CB sing N N 421
VAL CA HA sing N N 422
VAL C O doub N N 423
VAL C OXT sing N N 424
VAL CB CG1 sing N N 425
VAL CB CG2 sing N N 426
VAL CB HB sing N N 427
VAL CG1 HG11 sing N N 428
VAL CG1 HG12 sing N N 429
VAL CG1 HG13 sing N N 430
VAL CG2 HG21 sing N N 431
VAL CG2 HG22 sing N N 432
VAL CG2 HG23 sing N N 433
VAL OXT HXT sing N N 434
YIO C1 C2 sing N N 435
YIO C1 O5 sing N N 436
YIO C1 S1 sing N N 437
YIO C2 C3 sing N N 438
YIO C2 O2 sing N N 439
YIO C3 C4 sing N N 440
YIO C3 O3 sing N N 441
YIO C4 C5 sing N N 442
YIO C4 O4 sing N N 443
YIO C5 C6 sing N N 444
YIO C5 O5 sing N N 445
YIO C6 O6 sing N N 446
YIO C1 H1 sing N N 447
YIO C2 H2 sing N N 448
YIO C3 H3 sing N N 449
YIO O2 HO2 sing N N 450
YIO C4 H4 sing N N 451
YIO O3 HO3 sing N N 452
YIO C5 H5 sing N N 453
YIO O4 HO4 sing N N 454
YIO C6 H61 sing N N 455
YIO C6 H62 sing N N 456
YIO S1 HS1 sing N N 457
YIO O6 HO6 sing N N 458
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
3 YIO 1 n
3 GAL 2 n
#
_atom_sites.entry_id 3OYW
_atom_sites.fract_transf_matrix[1][1] 0.022539
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.017133
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.008945
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_