HEADER APOPTOSIS INHIBITOR 24-SEP-10 3OZ1 TITLE CIAP1-BIR3 DOMAIN IN COMPLEX WITH THE SMAC-MIMETIC COMPOUND SMAC066 CAVEAT 3OZ1 LIGAND BMB D 600 HAS HIGH REAL SPACE R VALUE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: REPEAT 3 (BIR3) DOMAIN, UNP RESIDUES 251-363; COMPND 5 SYNONYM: INHIBITOR OF APOPTOSIS PROTEIN 2, IAP-2, HIAP-2, HIAP2, C- COMPND 6 IAP1, TNFR2-TRAF-SIGNALING COMPLEX PROTEIN 2, IAP HOMOLOG B, RING COMPND 7 FINGER PROTEIN 48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BIRC2, API1, IAP2, MIHB, RNF48; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A(+) KEYWDS ZINC-FINGER, CASPASES, APOPTOSIS INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR F.COSSU,F.MALVEZZI,E.MASTRANGELO,G.CANEVARI,M.BOLOGNESI,M.MILANI REVDAT 2 20-MAR-24 3OZ1 1 REMARK SEQADV LINK REVDAT 1 24-NOV-10 3OZ1 0 JRNL AUTH F.COSSU,F.MALVEZZI,G.CANEVARI,E.MASTRANGELO,D.LECIS,D.DELIA, JRNL AUTH 2 P.SENECI,C.SCOLASTICO,M.BOLOGNESI,M.MILANI JRNL TITL RECOGNITION OF SMAC-MIMETIC COMPOUNDS BY THE BIR3 DOMAIN OF JRNL TITL 2 CIAP1 JRNL REF PROTEIN SCI. 2010 JRNL REFN ESSN 1469-896X JRNL PMID 20954235 JRNL DOI 10.1002/PRO.523 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 11333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 575 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2840 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2035 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2707 REMARK 3 BIN R VALUE (WORKING SET) : 0.1996 REMARK 3 BIN FREE R VALUE : 0.2801 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.68 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 133 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3386 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 184 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 78.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.10530 REMARK 3 B22 (A**2) : -17.34150 REMARK 3 B33 (A**2) : 13.23620 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.419 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.849 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3689 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4989 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1183 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 84 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 532 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3493 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 405 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4005 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.12 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.56 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.25 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: A253 - A355, A501 - A501, A600 - A600 REMARK 3 ORIGIN FOR THE GROUP (A): -16.7643 -38.6883 -5.7950 REMARK 3 T TENSOR REMARK 3 T11: -0.1818 T22: 0.2438 REMARK 3 T33: -0.2548 T12: 0.0717 REMARK 3 T13: 0.0296 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 7.7949 L22: 6.0618 REMARK 3 L33: 5.9993 L12: -2.1811 REMARK 3 L13: 1.7453 L23: 0.2653 REMARK 3 S TENSOR REMARK 3 S11: 0.0477 S12: -0.3566 S13: 0.1131 REMARK 3 S21: -0.1501 S22: 0.1841 S23: -0.0285 REMARK 3 S31: -0.3152 S32: -0.6082 S33: -0.2317 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: B253 - B356, B501 - B501, B600 - B600 REMARK 3 ORIGIN FOR THE GROUP (A): -8.7902 -43.5210 24.7651 REMARK 3 T TENSOR REMARK 3 T11: -0.2030 T22: 0.1068 REMARK 3 T33: -0.2300 T12: -0.0386 REMARK 3 T13: -0.0028 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 6.8125 L22: 4.9413 REMARK 3 L33: 6.4585 L12: -2.5446 REMARK 3 L13: -2.4470 L23: 0.9395 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: 0.0735 S13: 0.3647 REMARK 3 S21: 0.3888 S22: 0.1276 S23: -0.0686 REMARK 3 S31: 0.0374 S32: -0.2500 S33: -0.1055 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: C252 - C354, C501 - C501, C600 - C600 REMARK 3 ORIGIN FOR THE GROUP (A): -19.8987 -41.5897 54.1137 REMARK 3 T TENSOR REMARK 3 T11: -0.1031 T22: 0.1038 REMARK 3 T33: -0.2907 T12: 0.0401 REMARK 3 T13: -0.0136 T23: 0.0872 REMARK 3 L TENSOR REMARK 3 L11: 7.9510 L22: 4.5222 REMARK 3 L33: 4.2044 L12: -0.7177 REMARK 3 L13: 2.0913 L23: -0.2367 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: -0.3827 S13: -0.3697 REMARK 3 S21: -0.0595 S22: -0.0174 S23: 0.3191 REMARK 3 S31: 0.1719 S32: -0.3911 S33: -0.0026 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: D252 - D354, D501 - D501, D600 - D600 REMARK 3 ORIGIN FOR THE GROUP (A): -42.9998 -64.9572 60.8679 REMARK 3 T TENSOR REMARK 3 T11: -0.5832 T22: 0.1307 REMARK 3 T33: 0.5311 T12: 0.0440 REMARK 3 T13: 0.0311 T23: 0.3040 REMARK 3 L TENSOR REMARK 3 L11: 5.8943 L22: 2.7755 REMARK 3 L33: 6.3080 L12: 2.3857 REMARK 3 L13: 0.7059 L23: -1.1383 REMARK 3 S TENSOR REMARK 3 S11: -0.0359 S12: -0.8015 S13: -0.7237 REMARK 3 S21: 0.2979 S22: -0.3728 S23: -0.1744 REMARK 3 S31: 0.1823 S32: 0.0815 S33: 0.4086 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3OZ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061750. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 70 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11333 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 92.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 400, 0.1M SODIUM CITRATE, 0.1M REMARK 280 TRIS, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 56.79450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.31500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 56.79450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.31500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 56.79450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.31500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 56.79450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.31500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 244 REMARK 465 GLU A 245 REMARK 465 ASN A 246 REMARK 465 SER A 247 REMARK 465 LEU A 248 REMARK 465 GLU A 249 REMARK 465 THR A 250 REMARK 465 LEU A 251 REMARK 465 ARG A 252 REMARK 465 THR A 356 REMARK 465 SER A 357 REMARK 465 LEU A 358 REMARK 465 GLU A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 HIS A 364 REMARK 465 HIS A 365 REMARK 465 MET B 244 REMARK 465 GLU B 245 REMARK 465 ASN B 246 REMARK 465 SER B 247 REMARK 465 LEU B 248 REMARK 465 GLU B 249 REMARK 465 THR B 250 REMARK 465 LEU B 251 REMARK 465 ARG B 252 REMARK 465 SER B 357 REMARK 465 LEU B 358 REMARK 465 GLU B 359 REMARK 465 HIS B 360 REMARK 465 HIS B 361 REMARK 465 HIS B 362 REMARK 465 HIS B 363 REMARK 465 HIS B 364 REMARK 465 HIS B 365 REMARK 465 MET C 244 REMARK 465 GLU C 245 REMARK 465 ASN C 246 REMARK 465 SER C 247 REMARK 465 LEU C 248 REMARK 465 GLU C 249 REMARK 465 THR C 250 REMARK 465 LEU C 251 REMARK 465 SER C 355 REMARK 465 THR C 356 REMARK 465 SER C 357 REMARK 465 LEU C 358 REMARK 465 GLU C 359 REMARK 465 HIS C 360 REMARK 465 HIS C 361 REMARK 465 HIS C 362 REMARK 465 HIS C 363 REMARK 465 HIS C 364 REMARK 465 HIS C 365 REMARK 465 MET D 244 REMARK 465 GLU D 245 REMARK 465 ASN D 246 REMARK 465 SER D 247 REMARK 465 LEU D 248 REMARK 465 GLU D 249 REMARK 465 THR D 250 REMARK 465 LEU D 251 REMARK 465 ARG D 294 REMARK 465 SER D 355 REMARK 465 THR D 356 REMARK 465 SER D 357 REMARK 465 LEU D 358 REMARK 465 GLU D 359 REMARK 465 HIS D 360 REMARK 465 HIS D 361 REMARK 465 HIS D 362 REMARK 465 HIS D 363 REMARK 465 HIS D 364 REMARK 465 HIS D 365 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 295 -128.32 43.14 REMARK 500 CYS A 302 -67.57 -90.98 REMARK 500 HIS A 348 44.35 -142.83 REMARK 500 ASN B 295 -121.39 48.62 REMARK 500 CYS B 302 -67.91 -92.07 REMARK 500 PHE C 253 -72.63 -137.52 REMARK 500 SER C 254 14.45 -156.26 REMARK 500 ILE C 255 116.22 -39.66 REMARK 500 ASP C 296 3.81 81.33 REMARK 500 CYS C 302 -69.74 -92.23 REMARK 500 MET D 260 52.36 -100.97 REMARK 500 TYR D 272 72.09 -110.33 REMARK 500 PRO D 281 8.74 -53.59 REMARK 500 CYS D 302 -67.85 -91.20 REMARK 500 CYS D 309 73.88 45.22 REMARK 500 HIS D 348 47.80 -150.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 300 SG REMARK 620 2 CYS A 303 SG 109.8 REMARK 620 3 HIS A 320 NE2 103.4 116.9 REMARK 620 4 CYS A 327 SG 112.6 107.1 107.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 300 SG REMARK 620 2 CYS B 303 SG 111.3 REMARK 620 3 HIS B 320 NE2 106.8 115.5 REMARK 620 4 CYS B 327 SG 113.3 104.3 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 300 SG REMARK 620 2 CYS C 303 SG 108.8 REMARK 620 3 HIS C 320 NE2 108.5 116.5 REMARK 620 4 CYS C 327 SG 112.4 102.4 108.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 300 SG REMARK 620 2 CYS D 303 SG 101.3 REMARK 620 3 HIS D 320 NE2 114.1 112.9 REMARK 620 4 CYS D 327 SG 119.1 99.4 108.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMB A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMB B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMB C 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMB D 600 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MUP RELATED DB: PDB REMARK 900 CIAP1-BIR3 DOMAIN IN COMPLEX WITH THE SMAC-MIMETIC COMPOUND SMAC037 DBREF 3OZ1 A 245 357 UNP Q13490 BIRC2_HUMAN 251 363 DBREF 3OZ1 B 245 357 UNP Q13490 BIRC2_HUMAN 251 363 DBREF 3OZ1 C 245 357 UNP Q13490 BIRC2_HUMAN 251 363 DBREF 3OZ1 D 245 357 UNP Q13490 BIRC2_HUMAN 251 363 SEQADV 3OZ1 MET A 244 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 LEU A 358 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 GLU A 359 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS A 360 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS A 361 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS A 362 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS A 363 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS A 364 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS A 365 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 MET B 244 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 LEU B 358 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 GLU B 359 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS B 360 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS B 361 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS B 362 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS B 363 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS B 364 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS B 365 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 MET C 244 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 LEU C 358 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 GLU C 359 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS C 360 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS C 361 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS C 362 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS C 363 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS C 364 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS C 365 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 MET D 244 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 LEU D 358 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 GLU D 359 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS D 360 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS D 361 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS D 362 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS D 363 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS D 364 UNP Q13490 EXPRESSION TAG SEQADV 3OZ1 HIS D 365 UNP Q13490 EXPRESSION TAG SEQRES 1 A 122 MET GLU ASN SER LEU GLU THR LEU ARG PHE SER ILE SER SEQRES 2 A 122 ASN LEU SER MET GLN THR HIS ALA ALA ARG MET ARG THR SEQRES 3 A 122 PHE MET TYR TRP PRO SER SER VAL PRO VAL GLN PRO GLU SEQRES 4 A 122 GLN LEU ALA SER ALA GLY PHE TYR TYR VAL GLY ARG ASN SEQRES 5 A 122 ASP ASP VAL LYS CYS PHE CYS CYS ASP GLY GLY LEU ARG SEQRES 6 A 122 CYS TRP GLU SER GLY ASP ASP PRO TRP VAL GLU HIS ALA SEQRES 7 A 122 LYS TRP PHE PRO ARG CYS GLU PHE LEU ILE ARG MET LYS SEQRES 8 A 122 GLY GLN GLU PHE VAL ASP GLU ILE GLN GLY ARG TYR PRO SEQRES 9 A 122 HIS LEU LEU GLU GLN LEU LEU SER THR SER LEU GLU HIS SEQRES 10 A 122 HIS HIS HIS HIS HIS SEQRES 1 B 122 MET GLU ASN SER LEU GLU THR LEU ARG PHE SER ILE SER SEQRES 2 B 122 ASN LEU SER MET GLN THR HIS ALA ALA ARG MET ARG THR SEQRES 3 B 122 PHE MET TYR TRP PRO SER SER VAL PRO VAL GLN PRO GLU SEQRES 4 B 122 GLN LEU ALA SER ALA GLY PHE TYR TYR VAL GLY ARG ASN SEQRES 5 B 122 ASP ASP VAL LYS CYS PHE CYS CYS ASP GLY GLY LEU ARG SEQRES 6 B 122 CYS TRP GLU SER GLY ASP ASP PRO TRP VAL GLU HIS ALA SEQRES 7 B 122 LYS TRP PHE PRO ARG CYS GLU PHE LEU ILE ARG MET LYS SEQRES 8 B 122 GLY GLN GLU PHE VAL ASP GLU ILE GLN GLY ARG TYR PRO SEQRES 9 B 122 HIS LEU LEU GLU GLN LEU LEU SER THR SER LEU GLU HIS SEQRES 10 B 122 HIS HIS HIS HIS HIS SEQRES 1 C 122 MET GLU ASN SER LEU GLU THR LEU ARG PHE SER ILE SER SEQRES 2 C 122 ASN LEU SER MET GLN THR HIS ALA ALA ARG MET ARG THR SEQRES 3 C 122 PHE MET TYR TRP PRO SER SER VAL PRO VAL GLN PRO GLU SEQRES 4 C 122 GLN LEU ALA SER ALA GLY PHE TYR TYR VAL GLY ARG ASN SEQRES 5 C 122 ASP ASP VAL LYS CYS PHE CYS CYS ASP GLY GLY LEU ARG SEQRES 6 C 122 CYS TRP GLU SER GLY ASP ASP PRO TRP VAL GLU HIS ALA SEQRES 7 C 122 LYS TRP PHE PRO ARG CYS GLU PHE LEU ILE ARG MET LYS SEQRES 8 C 122 GLY GLN GLU PHE VAL ASP GLU ILE GLN GLY ARG TYR PRO SEQRES 9 C 122 HIS LEU LEU GLU GLN LEU LEU SER THR SER LEU GLU HIS SEQRES 10 C 122 HIS HIS HIS HIS HIS SEQRES 1 D 122 MET GLU ASN SER LEU GLU THR LEU ARG PHE SER ILE SER SEQRES 2 D 122 ASN LEU SER MET GLN THR HIS ALA ALA ARG MET ARG THR SEQRES 3 D 122 PHE MET TYR TRP PRO SER SER VAL PRO VAL GLN PRO GLU SEQRES 4 D 122 GLN LEU ALA SER ALA GLY PHE TYR TYR VAL GLY ARG ASN SEQRES 5 D 122 ASP ASP VAL LYS CYS PHE CYS CYS ASP GLY GLY LEU ARG SEQRES 6 D 122 CYS TRP GLU SER GLY ASP ASP PRO TRP VAL GLU HIS ALA SEQRES 7 D 122 LYS TRP PHE PRO ARG CYS GLU PHE LEU ILE ARG MET LYS SEQRES 8 D 122 GLY GLN GLU PHE VAL ASP GLU ILE GLN GLY ARG TYR PRO SEQRES 9 D 122 HIS LEU LEU GLU GLN LEU LEU SER THR SER LEU GLU HIS SEQRES 10 D 122 HIS HIS HIS HIS HIS HET ZN A 501 1 HET BMB A 600 45 HET ZN B 501 1 HET BMB B 600 45 HET ZN C 501 1 HET BMB C 600 45 HET ZN D 501 1 HET BMB D 600 45 HETNAM ZN ZINC ION HETNAM BMB (3S,6S,7R,9AS)-7-[2-(BENZYLAMINO)ETHYL]-N- HETNAM 2 BMB (DIPHENYLMETHYL)-6-{[(2S)-2-(METHYLAMINO) HETNAM 3 BMB BUTANOYL]AMINO}-5-OXOOCTAHYDRO-1H-PYRROLO[1,2- HETNAM 4 BMB A]AZEPINE-3-CARBOXAMIDE FORMUL 5 ZN 4(ZN 2+) FORMUL 6 BMB 4(C37 H47 N5 O3) FORMUL 13 HOH *9(H2 O) HELIX 1 1 ASN A 257 GLN A 261 5 5 HELIX 2 2 THR A 262 PHE A 270 1 9 HELIX 3 3 MET A 271 TRP A 273 5 3 HELIX 4 4 GLN A 280 ALA A 287 1 8 HELIX 5 5 ASP A 315 PHE A 324 1 10 HELIX 6 6 CYS A 327 TYR A 346 1 20 HELIX 7 7 HIS A 348 LEU A 354 1 7 HELIX 8 8 ASN B 257 GLN B 261 5 5 HELIX 9 9 THR B 262 THR B 269 1 8 HELIX 10 10 PHE B 270 TRP B 273 5 4 HELIX 11 11 GLN B 280 ALA B 287 1 8 HELIX 12 12 ASP B 315 PHE B 324 1 10 HELIX 13 13 CYS B 327 TYR B 346 1 20 HELIX 14 14 HIS B 348 THR B 356 1 9 HELIX 15 15 ASN C 257 GLN C 261 5 5 HELIX 16 16 THR C 262 PHE C 270 1 9 HELIX 17 17 MET C 271 TRP C 273 5 3 HELIX 18 18 GLN C 280 ALA C 287 1 8 HELIX 19 19 ASP C 315 PHE C 324 1 10 HELIX 20 20 CYS C 327 TYR C 346 1 20 HELIX 21 21 HIS C 348 LEU C 353 1 6 HELIX 22 22 ASN D 257 GLN D 261 5 5 HELIX 23 23 THR D 262 THR D 269 1 8 HELIX 24 24 GLN D 280 ALA D 287 1 8 HELIX 25 25 ASP D 315 PHE D 324 1 10 HELIX 26 26 CYS D 327 TYR D 346 1 20 HELIX 27 27 HIS D 348 LEU D 354 1 7 SHEET 1 A 3 PHE A 289 TYR A 291 0 SHEET 2 A 3 VAL A 298 CYS A 300 -1 O LYS A 299 N TYR A 290 SHEET 3 A 3 GLY A 306 LEU A 307 -1 O LEU A 307 N VAL A 298 SHEET 1 B 3 PHE B 289 TYR B 291 0 SHEET 2 B 3 VAL B 298 CYS B 300 -1 O LYS B 299 N TYR B 290 SHEET 3 B 3 GLY B 306 LEU B 307 -1 O LEU B 307 N VAL B 298 SHEET 1 C 3 PHE C 289 TYR C 291 0 SHEET 2 C 3 VAL C 298 CYS C 300 -1 O LYS C 299 N TYR C 290 SHEET 3 C 3 GLY C 306 LEU C 307 -1 O LEU C 307 N VAL C 298 SHEET 1 D 3 PHE D 289 TYR D 291 0 SHEET 2 D 3 VAL D 298 CYS D 300 -1 O LYS D 299 N TYR D 290 SHEET 3 D 3 GLY D 306 LEU D 307 -1 O LEU D 307 N VAL D 298 LINK SG CYS A 300 ZN ZN A 501 1555 1555 2.35 LINK SG CYS A 303 ZN ZN A 501 1555 1555 2.16 LINK NE2 HIS A 320 ZN ZN A 501 1555 1555 2.05 LINK SG CYS A 327 ZN ZN A 501 1555 1555 2.33 LINK SG CYS B 300 ZN ZN B 501 1555 1555 2.31 LINK SG CYS B 303 ZN ZN B 501 1555 1555 2.20 LINK NE2 HIS B 320 ZN ZN B 501 1555 1555 2.00 LINK SG CYS B 327 ZN ZN B 501 1555 1555 2.36 LINK SG CYS C 300 ZN ZN C 501 1555 1555 2.23 LINK SG CYS C 303 ZN ZN C 501 1555 1555 2.24 LINK NE2 HIS C 320 ZN ZN C 501 1555 1555 2.02 LINK SG CYS C 327 ZN ZN C 501 1555 1555 2.29 LINK SG CYS D 300 ZN ZN D 501 1555 1555 2.53 LINK SG CYS D 303 ZN ZN D 501 1555 1555 2.37 LINK NE2 HIS D 320 ZN ZN D 501 1555 1555 1.92 LINK SG CYS D 327 ZN ZN D 501 1555 1555 2.39 SITE 1 AC1 4 CYS A 300 CYS A 303 HIS A 320 CYS A 327 SITE 1 AC2 10 GLY A 306 LEU A 307 ARG A 308 CYS A 309 SITE 2 AC2 10 GLU A 311 ASP A 314 GLU A 319 TRP A 323 SITE 3 AC2 10 LEU A 353 LEU A 354 SITE 1 AC3 4 CYS B 300 CYS B 303 HIS B 320 CYS B 327 SITE 1 AC4 8 GLY B 306 LEU B 307 ARG B 308 CYS B 309 SITE 2 AC4 8 GLU B 311 ASP B 314 GLU B 319 TRP B 323 SITE 1 AC5 4 CYS C 300 CYS C 303 HIS C 320 CYS C 327 SITE 1 AC6 8 GLY C 306 LEU C 307 ARG C 308 CYS C 309 SITE 2 AC6 8 GLU C 311 ASP C 314 GLU C 319 TRP C 323 SITE 1 AC7 4 CYS D 300 CYS D 303 HIS D 320 CYS D 327 SITE 1 AC8 9 GLY D 306 LEU D 307 ARG D 308 CYS D 309 SITE 2 AC8 9 TRP D 310 ASP D 314 GLU D 319 TRP D 323 SITE 3 AC8 9 LEU D 353 CRYST1 113.589 114.630 92.962 90.00 90.00 90.00 C 2 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008804 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008724 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010757 0.00000