HEADER TRANSFERASE 24-SEP-10 3OZ7 TITLE CRYSTAL STRUCTURE OF 3-PHOSPHOPGLYCERATE KINASE OF PLASMODIUM TITLE 2 FALCIPARUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOGLYCERATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.2.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: PGK, PFI1105W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHOGLYCERATE KINASE, TRANSFERASE, ATP BINDING, GLYCOLYSIS, KEYWDS 2 MALARIA PARASITE EXPDTA X-RAY DIFFRACTION AUTHOR C.D.SMITH,D.CHATTOPADHYAY,B.PAL REVDAT 4 06-SEP-23 3OZ7 1 REMARK SEQADV REVDAT 3 14-SEP-11 3OZ7 1 JRNL REVDAT 2 17-AUG-11 3OZ7 1 JRNL REVDAT 1 10-AUG-11 3OZ7 0 JRNL AUTH C.D.SMITH,D.CHATTOPADHYAY,B.PAL JRNL TITL CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM PHOSPHOGLYCERATE JRNL TITL 2 KINASE: EVIDENCE FOR ANION BINDING IN THE BASIC PATCH. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 412 203 2011 JRNL REFN ISSN 0006-291X JRNL PMID 21798238 JRNL DOI 10.1016/J.BBRC.2011.07.045 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 33703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1769 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1769 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6370 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 22 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : -0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.576 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.334 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.239 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.863 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6472 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8714 ; 1.130 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 831 ; 5.176 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 264 ;39.857 ;26.515 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1250 ;18.553 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;11.834 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1011 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4683 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4115 ; 0.339 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6617 ; 0.657 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2357 ; 0.908 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2097 ; 1.652 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1840 -36.8190 10.1460 REMARK 3 T TENSOR REMARK 3 T11: 0.1564 T22: 0.1182 REMARK 3 T33: 0.0690 T12: 0.0222 REMARK 3 T13: -0.0925 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 1.5216 L22: 0.4715 REMARK 3 L33: 1.0315 L12: 0.1204 REMARK 3 L13: -0.4439 L23: 0.1523 REMARK 3 S TENSOR REMARK 3 S11: -0.0563 S12: 0.0078 S13: 0.0907 REMARK 3 S21: -0.0402 S22: -0.0491 S23: 0.0295 REMARK 3 S31: -0.1982 S32: -0.1399 S33: 0.1054 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 414 REMARK 3 ORIGIN FOR THE GROUP (A): 36.2330 -22.6170 28.5940 REMARK 3 T TENSOR REMARK 3 T11: 0.2567 T22: 0.0503 REMARK 3 T33: 0.0743 T12: -0.0271 REMARK 3 T13: -0.1185 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.5736 L22: 1.4257 REMARK 3 L33: 1.0905 L12: 0.4600 REMARK 3 L13: 0.0947 L23: -0.2533 REMARK 3 S TENSOR REMARK 3 S11: -0.0793 S12: -0.1054 S13: 0.0058 REMARK 3 S21: -0.0874 S22: -0.1391 S23: 0.0680 REMARK 3 S31: -0.3436 S32: 0.0318 S33: 0.2183 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3OZ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SILICON REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35575 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1LTK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, HEPES BUFFER, PH REMARK 280 7.25, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.53900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 175.07800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 131.30850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 218.84750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.76950 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.53900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 175.07800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 218.84750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 131.30850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 43.76950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 GLU A 102 CG CD OE1 OE2 REMARK 470 PHE A 347 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 10 CG OD1 OD2 REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 GLU B 102 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 16 -0.54 69.50 REMARK 500 ASN A 120 112.93 -27.77 REMARK 500 ALA A 164 68.78 -102.38 REMARK 500 ALA A 171 46.18 -78.66 REMARK 500 LYS A 179 49.68 -83.37 REMARK 500 PHE A 347 16.75 98.83 REMARK 500 ASP B 13 36.95 -91.53 REMARK 500 ASN B 16 -4.00 72.37 REMARK 500 ASN B 120 116.65 -36.10 REMARK 500 ALA B 171 49.47 -93.57 REMARK 500 LYS B 179 43.44 -88.42 REMARK 500 ASN B 309 -8.95 73.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LTK RELATED DB: PDB REMARK 900 RELATED ID: 3OZA RELATED DB: PDB DBREF 3OZ7 A 2 415 UNP P27362 PGK_PLAF7 2 415 DBREF 3OZ7 B 2 415 UNP P27362 PGK_PLAF7 2 415 SEQADV 3OZ7 HIS A -1 UNP P27362 EXPRESSION TAG SEQADV 3OZ7 HIS A 0 UNP P27362 EXPRESSION TAG SEQADV 3OZ7 HIS A 1 UNP P27362 EXPRESSION TAG SEQADV 3OZ7 HIS B -1 UNP P27362 EXPRESSION TAG SEQADV 3OZ7 HIS B 0 UNP P27362 EXPRESSION TAG SEQADV 3OZ7 HIS B 1 UNP P27362 EXPRESSION TAG SEQRES 1 A 417 HIS HIS HIS LEU GLY ASN LYS LEU SER ILE SER ASP LEU SEQRES 2 A 417 LYS ASP ILE LYS ASN LYS LYS VAL LEU VAL ARG VAL ASP SEQRES 3 A 417 PHE ASN VAL PRO ILE GLU ASN GLY ILE ILE LYS ASP THR SEQRES 4 A 417 ASN ARG ILE THR ALA THR LEU PRO THR ILE ASN HIS LEU SEQRES 5 A 417 LYS LYS GLU GLY ALA SER LYS ILE ILE LEU ILE SER HIS SEQRES 6 A 417 CYS GLY ARG PRO ASP GLY LEU ARG ASN GLU LYS TYR THR SEQRES 7 A 417 LEU LYS PRO VAL ALA GLU THR LEU LYS GLY LEU LEU GLY SEQRES 8 A 417 GLU GLU VAL LEU PHE LEU ASN ASP CYS VAL GLY LYS GLU SEQRES 9 A 417 VAL GLU ASP LYS ILE ASN ALA ALA LYS GLU ASN SER VAL SEQRES 10 A 417 ILE LEU LEU GLU ASN LEU ARG PHE HIS ILE GLU GLU GLU SEQRES 11 A 417 GLY LYS GLY VAL ASP ALA ASN GLY ASN LYS VAL LYS ALA SEQRES 12 A 417 ASN LYS GLU ASP VAL GLU LYS PHE GLN ASN ASP LEU THR SEQRES 13 A 417 LYS LEU ALA ASP VAL PHE ILE ASN ASP ALA PHE GLY THR SEQRES 14 A 417 ALA HIS ARG ALA HIS SER SER MET VAL GLY VAL LYS LEU SEQRES 15 A 417 ASN VAL LYS ALA SER GLY PHE LEU MET LYS LYS GLU LEU SEQRES 16 A 417 GLU TYR PHE SER LYS ALA LEU GLU ASN PRO GLN ARG PRO SEQRES 17 A 417 LEU LEU ALA ILE LEU GLY GLY ALA LYS VAL SER ASP LYS SEQRES 18 A 417 ILE GLN LEU ILE LYS ASN LEU LEU ASP LYS VAL ASP ARG SEQRES 19 A 417 MET ILE ILE GLY GLY GLY MET ALA TYR THR PHE LYS LYS SEQRES 20 A 417 VAL LEU ASN ASN MET LYS ILE GLY THR SER LEU PHE ASP SEQRES 21 A 417 GLU ALA GLY SER LYS ILE VAL GLY GLU ILE MET GLU LYS SEQRES 22 A 417 ALA LYS ALA LYS ASN VAL GLN ILE PHE LEU PRO VAL ASP SEQRES 23 A 417 PHE LYS ILE ALA ASP ASN PHE ASP ASN ASN ALA ASN THR SEQRES 24 A 417 LYS PHE VAL THR ASP GLU GLU GLY ILE PRO ASP ASN TRP SEQRES 25 A 417 MET GLY LEU ASP ALA GLY PRO LYS SER ILE GLU ASN TYR SEQRES 26 A 417 LYS ASP VAL ILE LEU THR SER LYS THR VAL ILE TRP ASN SEQRES 27 A 417 GLY PRO GLN GLY VAL PHE GLU MET PRO ASN PHE ALA LYS SEQRES 28 A 417 GLY SER ILE GLU CYS LEU ASN LEU VAL VAL GLU VAL THR SEQRES 29 A 417 LYS LYS GLY ALA ILE THR ILE VAL GLY GLY GLY ASP THR SEQRES 30 A 417 ALA SER LEU VAL GLU GLN GLN ASN LYS LYS ASN GLU ILE SEQRES 31 A 417 SER HIS VAL SER THR GLY GLY GLY ALA SER LEU GLU LEU SEQRES 32 A 417 LEU GLU GLY LYS GLU LEU PRO GLY VAL LEU ALA LEU SER SEQRES 33 A 417 ASN SEQRES 1 B 417 HIS HIS HIS LEU GLY ASN LYS LEU SER ILE SER ASP LEU SEQRES 2 B 417 LYS ASP ILE LYS ASN LYS LYS VAL LEU VAL ARG VAL ASP SEQRES 3 B 417 PHE ASN VAL PRO ILE GLU ASN GLY ILE ILE LYS ASP THR SEQRES 4 B 417 ASN ARG ILE THR ALA THR LEU PRO THR ILE ASN HIS LEU SEQRES 5 B 417 LYS LYS GLU GLY ALA SER LYS ILE ILE LEU ILE SER HIS SEQRES 6 B 417 CYS GLY ARG PRO ASP GLY LEU ARG ASN GLU LYS TYR THR SEQRES 7 B 417 LEU LYS PRO VAL ALA GLU THR LEU LYS GLY LEU LEU GLY SEQRES 8 B 417 GLU GLU VAL LEU PHE LEU ASN ASP CYS VAL GLY LYS GLU SEQRES 9 B 417 VAL GLU ASP LYS ILE ASN ALA ALA LYS GLU ASN SER VAL SEQRES 10 B 417 ILE LEU LEU GLU ASN LEU ARG PHE HIS ILE GLU GLU GLU SEQRES 11 B 417 GLY LYS GLY VAL ASP ALA ASN GLY ASN LYS VAL LYS ALA SEQRES 12 B 417 ASN LYS GLU ASP VAL GLU LYS PHE GLN ASN ASP LEU THR SEQRES 13 B 417 LYS LEU ALA ASP VAL PHE ILE ASN ASP ALA PHE GLY THR SEQRES 14 B 417 ALA HIS ARG ALA HIS SER SER MET VAL GLY VAL LYS LEU SEQRES 15 B 417 ASN VAL LYS ALA SER GLY PHE LEU MET LYS LYS GLU LEU SEQRES 16 B 417 GLU TYR PHE SER LYS ALA LEU GLU ASN PRO GLN ARG PRO SEQRES 17 B 417 LEU LEU ALA ILE LEU GLY GLY ALA LYS VAL SER ASP LYS SEQRES 18 B 417 ILE GLN LEU ILE LYS ASN LEU LEU ASP LYS VAL ASP ARG SEQRES 19 B 417 MET ILE ILE GLY GLY GLY MET ALA TYR THR PHE LYS LYS SEQRES 20 B 417 VAL LEU ASN ASN MET LYS ILE GLY THR SER LEU PHE ASP SEQRES 21 B 417 GLU ALA GLY SER LYS ILE VAL GLY GLU ILE MET GLU LYS SEQRES 22 B 417 ALA LYS ALA LYS ASN VAL GLN ILE PHE LEU PRO VAL ASP SEQRES 23 B 417 PHE LYS ILE ALA ASP ASN PHE ASP ASN ASN ALA ASN THR SEQRES 24 B 417 LYS PHE VAL THR ASP GLU GLU GLY ILE PRO ASP ASN TRP SEQRES 25 B 417 MET GLY LEU ASP ALA GLY PRO LYS SER ILE GLU ASN TYR SEQRES 26 B 417 LYS ASP VAL ILE LEU THR SER LYS THR VAL ILE TRP ASN SEQRES 27 B 417 GLY PRO GLN GLY VAL PHE GLU MET PRO ASN PHE ALA LYS SEQRES 28 B 417 GLY SER ILE GLU CYS LEU ASN LEU VAL VAL GLU VAL THR SEQRES 29 B 417 LYS LYS GLY ALA ILE THR ILE VAL GLY GLY GLY ASP THR SEQRES 30 B 417 ALA SER LEU VAL GLU GLN GLN ASN LYS LYS ASN GLU ILE SEQRES 31 B 417 SER HIS VAL SER THR GLY GLY GLY ALA SER LEU GLU LEU SEQRES 32 B 417 LEU GLU GLY LYS GLU LEU PRO GLY VAL LEU ALA LEU SER SEQRES 33 B 417 ASN HET SO4 A 501 5 HET SO4 A 601 5 HET SO4 B 502 5 HET SO4 B 602 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *22(H2 O) HELIX 1 1 SER A 7 LEU A 11 5 5 HELIX 2 2 THR A 37 ALA A 42 1 6 HELIX 3 3 THR A 43 GLY A 54 1 12 HELIX 4 4 ASN A 72 THR A 76 5 5 HELIX 5 5 LEU A 77 GLY A 89 1 13 HELIX 6 6 GLY A 100 ALA A 110 1 11 HELIX 7 7 ASN A 120 HIS A 124 5 5 HELIX 8 8 ASN A 142 LYS A 155 1 14 HELIX 9 9 ALA A 164 ALA A 168 5 5 HELIX 10 10 HIS A 172 GLY A 177 1 6 HELIX 11 11 GLY A 186 GLU A 201 1 16 HELIX 12 12 LYS A 219 ASP A 228 1 10 HELIX 13 13 GLY A 238 ASN A 249 1 12 HELIX 14 14 GLY A 261 LYS A 275 1 15 HELIX 15 15 GLY A 316 THR A 329 1 14 HELIX 16 16 ALA A 348 GLY A 365 1 18 HELIX 17 17 GLY A 372 GLN A 382 1 11 HELIX 18 18 LYS A 384 ILE A 388 5 5 HELIX 19 19 GLY A 395 GLU A 403 1 9 HELIX 20 20 LEU A 407 ALA A 412 1 6 HELIX 21 21 SER B 7 LEU B 11 5 5 HELIX 22 22 THR B 37 ALA B 42 1 6 HELIX 23 23 THR B 43 GLU B 53 1 11 HELIX 24 24 ASN B 72 THR B 76 5 5 HELIX 25 25 LYS B 78 GLY B 89 1 12 HELIX 26 26 GLY B 100 ALA B 110 1 11 HELIX 27 27 ASN B 120 HIS B 124 5 5 HELIX 28 28 ASN B 142 LYS B 155 1 14 HELIX 29 29 ALA B 164 ALA B 168 5 5 HELIX 30 30 HIS B 172 GLY B 177 1 6 HELIX 31 31 GLY B 186 GLU B 201 1 16 HELIX 32 32 VAL B 216 ASP B 218 5 3 HELIX 33 33 LYS B 219 VAL B 230 1 12 HELIX 34 34 GLY B 238 ASN B 249 1 12 HELIX 35 35 GLY B 261 LYS B 275 1 15 HELIX 36 36 GLY B 316 THR B 329 1 14 HELIX 37 37 MET B 344 PHE B 347 5 4 HELIX 38 38 ALA B 348 GLY B 365 1 18 HELIX 39 39 GLY B 372 ASN B 383 1 12 HELIX 40 40 LYS B 384 ILE B 388 5 5 HELIX 41 41 GLY B 395 GLU B 403 1 9 HELIX 42 42 LEU B 407 ALA B 412 1 6 SHEET 1 A 6 LEU A 93 LEU A 95 0 SHEET 2 A 6 SER A 114 LEU A 118 1 O LEU A 117 N LEU A 93 SHEET 3 A 6 LYS A 57 ILE A 61 1 N LEU A 60 O ILE A 116 SHEET 4 A 6 LYS A 18 ARG A 22 1 N VAL A 21 O ILE A 59 SHEET 5 A 6 VAL A 159 ASN A 162 1 O ILE A 161 N LEU A 20 SHEET 6 A 6 LYS A 183 SER A 185 1 O ALA A 184 N ASN A 162 SHEET 1 B 2 ILE A 29 GLU A 30 0 SHEET 2 B 2 ILE A 33 ILE A 34 -1 O ILE A 33 N GLU A 30 SHEET 1 C 2 LYS A 130 VAL A 132 0 SHEET 2 C 2 LYS A 138 LYS A 140 -1 O VAL A 139 N GLY A 131 SHEET 1 D 6 GLN A 278 PHE A 280 0 SHEET 2 D 6 ARG A 232 GLY A 236 1 N MET A 233 O PHE A 280 SHEET 3 D 6 LEU A 207 GLY A 212 1 N LEU A 211 O ILE A 234 SHEET 4 D 6 THR A 332 ASN A 336 1 O ILE A 334 N ILE A 210 SHEET 5 D 6 ILE A 367 VAL A 370 1 O ILE A 369 N TRP A 335 SHEET 6 D 6 HIS A 390 VAL A 391 1 O HIS A 390 N VAL A 370 SHEET 1 E 3 THR A 297 THR A 301 0 SHEET 2 E 3 ASP A 284 ALA A 288 -1 N ILE A 287 O LYS A 298 SHEET 3 E 3 MET A 311 ALA A 315 -1 O ASP A 314 N LYS A 286 SHEET 1 F 6 LEU B 93 LEU B 95 0 SHEET 2 F 6 SER B 114 LEU B 118 1 O LEU B 117 N LEU B 93 SHEET 3 F 6 LYS B 57 ILE B 61 1 N LEU B 60 O ILE B 116 SHEET 4 F 6 LYS B 18 VAL B 23 1 N VAL B 21 O ILE B 59 SHEET 5 F 6 VAL B 159 ASP B 163 1 O ILE B 161 N LEU B 20 SHEET 6 F 6 VAL B 182 SER B 185 1 O VAL B 182 N PHE B 160 SHEET 1 G 2 ILE B 29 GLU B 30 0 SHEET 2 G 2 ILE B 33 ILE B 34 -1 O ILE B 33 N GLU B 30 SHEET 1 H 2 LYS B 130 VAL B 132 0 SHEET 2 H 2 LYS B 138 LYS B 140 -1 O VAL B 139 N GLY B 131 SHEET 1 I 6 GLN B 278 PHE B 280 0 SHEET 2 I 6 ARG B 232 ILE B 235 1 N MET B 233 O PHE B 280 SHEET 3 I 6 LEU B 207 LEU B 211 1 N LEU B 211 O ILE B 234 SHEET 4 I 6 THR B 332 ASN B 336 1 O THR B 332 N LEU B 208 SHEET 5 I 6 ILE B 367 VAL B 370 1 O ILE B 369 N TRP B 335 SHEET 6 I 6 HIS B 390 VAL B 391 1 O HIS B 390 N VAL B 370 SHEET 1 J 3 THR B 297 THR B 301 0 SHEET 2 J 3 ASP B 284 ALA B 288 -1 N ILE B 287 O LYS B 298 SHEET 3 J 3 MET B 311 ALA B 315 -1 O ASP B 314 N LYS B 286 CISPEP 1 ARG A 205 PRO A 206 0 1.45 CISPEP 2 ARG B 205 PRO B 206 0 1.51 SITE 1 AC1 4 GLY A 213 ALA A 214 LYS A 215 LYS A 219 SITE 1 AC2 4 HIS A 63 ARG A 66 ARG A 122 ARG A 170 SITE 1 AC3 4 GLY B 213 ALA B 214 LYS B 215 LYS B 219 SITE 1 AC4 3 HIS B 63 ARG B 66 ARG B 122 CRYST1 131.386 131.386 262.617 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007611 0.004394 0.000000 0.00000 SCALE2 0.000000 0.008789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003808 0.00000