HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 27-SEP-10 3P04 TITLE CRYSTAL STRUCTURE OF THE BCR PROTEIN FROM CORYNEBACTERIUM GLUTAMICUM. TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET CGR8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED BCR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 64-141; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM; SOURCE 3 ORGANISM_TAXID: 1718; SOURCE 4 GENE: CG2363, CGL2152; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) +MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 21-23C; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: CGR8-64-141-21.27 KEYWDS SEPF HOMOLOG, DUF552, PSI-BIOLOGY, NESG, STRUCTURAL GENOMICS, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, CELL KEYWDS 3 DIVISION, CYTOPLASMA, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR S.VOROBIEV,S.LEW,J.SEETHARAMAN,H.HAMILTON,R.XIAO,D.J.PATEL, AUTHOR 2 C.CICCOSANTI,D.LEE,J.K.EVERETT,R.NAIR,T.B.ACTON,B.ROST, AUTHOR 3 G.T.MONTELIONE,L.TONG,J.F.HUNT,NORTHEAST STRUCTURAL GENOMICS AUTHOR 4 CONSORTIUM (NESG) REVDAT 3 08-NOV-17 3P04 1 REMARK REVDAT 2 22-FEB-12 3P04 1 VERSN KEYWDS REVDAT 1 13-OCT-10 3P04 0 JRNL AUTH S.VOROBIEV,S.LEW,J.SEETHARAMAN,H.HAMILTON,R.XIAO,D.J.PATEL, JRNL AUTH 2 C.CICCOSANTI,D.LEE,J.K.EVERETT,R.NAIR,T.B.ACTON,B.ROST, JRNL AUTH 3 G.T.MONTELIONE,L.TONG,J.F.HUNT JRNL TITL CRYSTAL STRUCTURE OF THE BCR PROTEIN FROM CORYNEBACTERIUM JRNL TITL 2 GLUTAMICUM. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET JRNL TITL 3 CGR8. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6_289 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.640 REMARK 3 FREE R VALUE TEST SET COUNT : 702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : 16.334 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 26.0973 33.3295 39.0424 REMARK 3 T TENSOR REMARK 3 T11: 0.0727 T22: 0.0676 REMARK 3 T33: 0.0772 T12: 0.0210 REMARK 3 T13: 0.0048 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.1810 L22: 0.2750 REMARK 3 L33: 0.1130 L12: 0.0467 REMARK 3 L13: 0.3042 L23: 0.2194 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: -0.0044 S13: -0.0563 REMARK 3 S21: -0.0548 S22: -0.0278 S23: 0.0176 REMARK 3 S31: -0.0356 S32: -0.0118 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 25.2954 25.1356 21.9482 REMARK 3 T TENSOR REMARK 3 T11: 0.0297 T22: 0.0217 REMARK 3 T33: 0.0001 T12: -0.0135 REMARK 3 T13: 0.0107 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 0.1848 L22: 0.7541 REMARK 3 L33: 0.8367 L12: -0.6984 REMARK 3 L13: 0.1460 L23: 0.0259 REMARK 3 S TENSOR REMARK 3 S11: -0.0400 S12: -0.0601 S13: 0.0093 REMARK 3 S21: -0.0160 S22: 0.0414 S23: 0.0231 REMARK 3 S31: 0.0540 S32: 0.0039 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3P04 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061789. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97899 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15202 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.30600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SNB REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M AMMONIUM CITRATE, REMARK 280 PH 5.1, MICROBATCH UNDER PARAFFIN OIL, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.43350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.21200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.94250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.21200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.43350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.94250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 63 REMARK 465 SER A 141 REMARK 465 LEU A 142 REMARK 465 GLU A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 HIS A 147 REMARK 465 HIS A 148 REMARK 465 HIS A 149 REMARK 465 MSE B 63 REMARK 465 SER B 64 REMARK 465 TYR B 65 REMARK 465 GLN B 66 REMARK 465 SER B 67 REMARK 465 THR B 68 REMARK 465 ILE B 69 REMARK 465 VAL B 70 REMARK 465 LEU B 142 REMARK 465 GLU B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 HIS B 146 REMARK 465 HIS B 147 REMARK 465 HIS B 148 REMARK 465 HIS B 149 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CGR8 RELATED DB: TARGETDB DBREF 3P04 A 64 141 UNP Q8NNN6 Q8NNN6_CORGL 64 141 DBREF 3P04 B 64 141 UNP Q8NNN6 Q8NNN6_CORGL 64 141 SEQADV 3P04 MSE A 63 UNP Q8NNN6 INITIATING METHIONINE SEQADV 3P04 HIS A 120 UNP Q8NNN6 ARG 120 ENGINEERED MUTATION SEQADV 3P04 LEU A 142 UNP Q8NNN6 EXPRESSION TAG SEQADV 3P04 GLU A 143 UNP Q8NNN6 EXPRESSION TAG SEQADV 3P04 HIS A 144 UNP Q8NNN6 EXPRESSION TAG SEQADV 3P04 HIS A 145 UNP Q8NNN6 EXPRESSION TAG SEQADV 3P04 HIS A 146 UNP Q8NNN6 EXPRESSION TAG SEQADV 3P04 HIS A 147 UNP Q8NNN6 EXPRESSION TAG SEQADV 3P04 HIS A 148 UNP Q8NNN6 EXPRESSION TAG SEQADV 3P04 HIS A 149 UNP Q8NNN6 EXPRESSION TAG SEQADV 3P04 MSE B 63 UNP Q8NNN6 INITIATING METHIONINE SEQADV 3P04 HIS B 120 UNP Q8NNN6 ARG 120 ENGINEERED MUTATION SEQADV 3P04 LEU B 142 UNP Q8NNN6 EXPRESSION TAG SEQADV 3P04 GLU B 143 UNP Q8NNN6 EXPRESSION TAG SEQADV 3P04 HIS B 144 UNP Q8NNN6 EXPRESSION TAG SEQADV 3P04 HIS B 145 UNP Q8NNN6 EXPRESSION TAG SEQADV 3P04 HIS B 146 UNP Q8NNN6 EXPRESSION TAG SEQADV 3P04 HIS B 147 UNP Q8NNN6 EXPRESSION TAG SEQADV 3P04 HIS B 148 UNP Q8NNN6 EXPRESSION TAG SEQADV 3P04 HIS B 149 UNP Q8NNN6 EXPRESSION TAG SEQRES 1 A 87 MSE SER TYR GLN SER THR ILE VAL PRO VAL GLU LEU HIS SEQRES 2 A 87 SER PHE GLU ASP ALA GLN VAL ILE GLY GLY ALA PHE ARG SEQRES 3 A 87 ASP GLY ASP ALA VAL VAL PHE ASP MSE SER LEU LEU SER SEQRES 4 A 87 ARG GLU GLU ALA ARG ARG ILE VAL ASP PHE ALA ALA GLY SEQRES 5 A 87 LEU CYS PHE ALA LEU HIS GLY LYS MSE GLN LYS ILE ASP SEQRES 6 A 87 SER VAL THR PHE ALA VAL VAL PRO GLU LEU SER ASN ILE SEQRES 7 A 87 SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 87 MSE SER TYR GLN SER THR ILE VAL PRO VAL GLU LEU HIS SEQRES 2 B 87 SER PHE GLU ASP ALA GLN VAL ILE GLY GLY ALA PHE ARG SEQRES 3 B 87 ASP GLY ASP ALA VAL VAL PHE ASP MSE SER LEU LEU SER SEQRES 4 B 87 ARG GLU GLU ALA ARG ARG ILE VAL ASP PHE ALA ALA GLY SEQRES 5 B 87 LEU CYS PHE ALA LEU HIS GLY LYS MSE GLN LYS ILE ASP SEQRES 6 B 87 SER VAL THR PHE ALA VAL VAL PRO GLU LEU SER ASN ILE SEQRES 7 B 87 SER LEU GLU HIS HIS HIS HIS HIS HIS MODRES 3P04 MSE A 97 MET SELENOMETHIONINE MODRES 3P04 MSE A 123 MET SELENOMETHIONINE MODRES 3P04 MSE B 97 MET SELENOMETHIONINE MODRES 3P04 MSE B 123 MET SELENOMETHIONINE HET MSE A 97 8 HET MSE A 123 8 HET MSE B 97 8 HET MSE B 123 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 HOH *91(H2 O) HELIX 1 1 SER A 76 GLU A 78 5 3 HELIX 2 2 ASP A 79 ASP A 89 1 11 HELIX 3 3 SER A 101 LEU A 119 1 19 HELIX 4 4 SER B 76 GLU B 78 5 3 HELIX 5 5 ASP B 79 ASP B 89 1 11 HELIX 6 6 SER B 101 LEU B 119 1 19 SHEET 1 A 4 VAL A 70 GLU A 73 0 SHEET 2 A 4 VAL A 93 ASP A 96 1 O ASP A 96 N VAL A 72 SHEET 3 A 4 THR A 130 VAL A 134 -1 O VAL A 133 N VAL A 93 SHEET 4 A 4 LYS A 122 ASP A 127 -1 N ILE A 126 O THR A 130 SHEET 1 B 4 VAL B 72 GLU B 73 0 SHEET 2 B 4 VAL B 93 ASP B 96 1 O ASP B 96 N VAL B 72 SHEET 3 B 4 THR B 130 VAL B 134 -1 O VAL B 133 N VAL B 93 SHEET 4 B 4 LYS B 122 ASP B 127 -1 N LYS B 122 O VAL B 134 LINK C ASP A 96 N MSE A 97 1555 1555 1.33 LINK C MSE A 97 N SER A 98 1555 1555 1.33 LINK C LYS A 122 N MSE A 123 1555 1555 1.33 LINK C MSE A 123 N GLN A 124 1555 1555 1.33 LINK C ASP B 96 N MSE B 97 1555 1555 1.33 LINK C MSE B 97 N SER B 98 1555 1555 1.33 LINK C LYS B 122 N MSE B 123 1555 1555 1.33 LINK C MSE B 123 N GLN B 124 1555 1555 1.32 CRYST1 34.867 57.885 76.424 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028680 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017276 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013085 0.00000