HEADER HYDROLASE 27-SEP-10 3P06 TITLE CRYSTAL STRUCTURE OF TELLINA VIRUS 1 VP4 PROTEASE IN THE FORM OF AN TITLE 2 INTRA-MOLECULAR(CIS)ACYL-ENZYME COMPLEX. COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP4 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 637-830; COMPND 5 EC: 3.4.21.115; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TELLINA VIRUS 1; SOURCE 3 ORGANISM_TAXID: 321302; SOURCE 4 GENE: VIRAL PROTEIN 4 (VP4); SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TUNER (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B+ KEYWDS CIS-CLEAVAGE, INTRAMOLECULAR ACYL-ENZYME, ESTER-LINKAGE, ALPHA/BETA KEYWDS 2 PROTEIN, PROTEASE, POLYPROTEIN PROCESSING, ACYL-ENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.Y.W.CHUNG,M.PAETZEL REVDAT 3 20-APR-11 3P06 1 JRNL REVDAT 2 16-FEB-11 3P06 1 JRNL REVDAT 1 02-FEB-11 3P06 0 JRNL AUTH I.Y.CHUNG,M.PAETZEL JRNL TITL CRYSTAL STRUCTURE OF A VIRAL PROTEASE INTRAMOLECULAR JRNL TITL 2 ACYL-ENZYME COMPLEX: INSIGHTS INTO CIS-CLEAVAGE AT THE JRNL TITL 3 VP4/VP3 JUNCTION OF TELLINA BIRNAVIRUS. JRNL REF J.BIOL.CHEM. V. 286 12475 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21288899 JRNL DOI 10.1074/JBC.M110.198812 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.Y.CHUNG,M.PAETZEL REMARK 1 TITL EXPRESSION, PURIFICATION AND CRYSTALLIZATION OF VP4 PROTEASE REMARK 1 TITL 2 FROM TELLINA VIRUS 1. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 67 157 2011 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 21206051 REMARK 1 DOI 10.1107/S1744309110048803 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 12743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 662 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 867 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1424 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.221 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1471 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1993 ; 1.979 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 193 ; 6.422 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 51 ;39.944 ;26.078 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 248 ;15.683 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;17.371 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 240 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1064 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 968 ; 1.186 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1555 ; 2.126 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 502 ; 3.965 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 437 ; 6.446 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 637 A 657 REMARK 3 ORIGIN FOR THE GROUP (A): -8.4734 14.2418 -18.0287 REMARK 3 T TENSOR REMARK 3 T11: 0.0983 T22: 0.0840 REMARK 3 T33: 0.0944 T12: 0.0225 REMARK 3 T13: -0.0484 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 2.4647 L22: 3.5219 REMARK 3 L33: 1.8471 L12: -1.6644 REMARK 3 L13: -0.5737 L23: 0.2362 REMARK 3 S TENSOR REMARK 3 S11: 0.0648 S12: 0.1334 S13: -0.2991 REMARK 3 S21: -0.0673 S22: -0.0676 S23: 0.4071 REMARK 3 S31: 0.0658 S32: -0.3428 S33: 0.0027 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 658 A 748 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1444 14.2549 -10.6512 REMARK 3 T TENSOR REMARK 3 T11: 0.1142 T22: 0.0242 REMARK 3 T33: 0.1014 T12: 0.0108 REMARK 3 T13: -0.0400 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.1936 L22: 1.1832 REMARK 3 L33: 2.3123 L12: -0.2706 REMARK 3 L13: 0.2426 L23: 0.1719 REMARK 3 S TENSOR REMARK 3 S11: 0.0773 S12: -0.0973 S13: -0.0910 REMARK 3 S21: 0.1745 S22: 0.0277 S23: -0.0532 REMARK 3 S31: 0.0904 S32: 0.1115 S33: -0.1050 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 749 A 814 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3892 15.3881 -25.9335 REMARK 3 T TENSOR REMARK 3 T11: 0.0823 T22: 0.0532 REMARK 3 T33: 0.0981 T12: 0.0126 REMARK 3 T13: -0.0006 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 2.8957 L22: 2.5618 REMARK 3 L33: 2.2086 L12: -0.6013 REMARK 3 L13: -0.0588 L23: 0.2021 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.0121 S13: 0.0862 REMARK 3 S21: -0.0892 S22: 0.0794 S23: -0.4584 REMARK 3 S31: -0.0171 S32: 0.2152 S33: -0.0800 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 815 A 830 REMARK 3 ORIGIN FOR THE GROUP (A): -8.9064 15.6744 -21.8862 REMARK 3 T TENSOR REMARK 3 T11: 0.0869 T22: 0.0949 REMARK 3 T33: 0.0814 T12: 0.0172 REMARK 3 T13: -0.0216 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 2.6124 L22: 15.7599 REMARK 3 L33: 6.2677 L12: -1.4949 REMARK 3 L13: 1.4984 L23: -7.4892 REMARK 3 S TENSOR REMARK 3 S11: 0.0196 S12: 0.1674 S13: -0.1219 REMARK 3 S21: -0.1192 S22: 0.4434 S23: 0.8148 REMARK 3 S31: 0.2270 S32: -0.3866 S33: -0.4630 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3P06 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-10. REMARK 100 THE RCSB ID CODE IS RCSB061791. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97893 REMARK 200 MONOCHROMATOR : A DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 (DCM) REMARK 200 OPTICS : DCM WITH CRYO-COOLED 1ST CRYSTAL REMARK 200 SAGITTALLY BENT 2ND CRYSTAL REMARK 200 FOLLOWED BY VERTICALLY FOCUSING REMARK 200 MIRROR. REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13466 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 52.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.400 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : 0.30000 REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 21% PEG8000, 0.55M AMMONIUM REMARK 280 SULFATE. DROP: ON A COVERSLIP, 1 MICROLITER OF VP4 WAS MIXED WITH REMARK 280 1 MICROLITER OF RESERVOIR REAGENT(21% PEG8000, 0.55M AMMONIUM REMARK 280 SULFATE) AND 1 MICROLITER OF 0.2M UREA AS ADDITIVE. TO AID IN REMARK 280 CRYSTAL NUCLEATION, THIS DROP WAS SEEDED WITH 1 MICROLITER OF REMARK 280 SELENOMETHIONINE- LABELLED CRYSTAL FROM AN OLDER DROP, PH 5.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.38067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 138.76133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.38067 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 138.76133 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.38067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 138.76133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 69.38067 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 138.76133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -155.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -69.38067 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -69.38067 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 654 N ARG A 656 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 672 CG GLU A 672 CD 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 654 62.67 -109.34 REMARK 500 ASN A 679 46.06 -90.81 REMARK 500 PHE A 736 -165.99 75.13 REMARK 500 GLN A 752 3.72 81.13 REMARK 500 LEU A 757 135.89 -170.75 REMARK 500 VAL A 781 -61.92 -126.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE URE A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 106 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PNL RELATED DB: PDB REMARK 900 BIRNAVIRUS VP4 PROTEASE REMARK 900 RELATED ID: 2PNM RELATED DB: PDB REMARK 900 BIRNAVIRUS VP4 PROTEASE REMARK 900 RELATED ID: 2GEF RELATED DB: PDB REMARK 900 BIRNAVIRUS VP4 PROTEASE DBREF 3P06 A 637 830 UNP Q2PBR5 Q2PBR5_9VIRU 637 830 SEQRES 1 A 194 ASN GLY VAL GLU LEU SER ALA VAL GLY VAL LEU LEU PRO SEQRES 2 A 194 VAL LEU MSE ASP SER GLY ARG ARG ILE SER GLY GLY ALA SEQRES 3 A 194 PHE MSE ALA VAL LYS GLY ASP LEU SER GLU HIS ILE LYS SEQRES 4 A 194 ASN PRO LYS ASN THR ARG ILE ALA GLN THR VAL ALA GLY SEQRES 5 A 194 GLY THR ILE TYR GLY LEU SER GLU MSE VAL ASN ILE ASP SEQRES 6 A 194 GLU ALA GLU LYS LEU PRO ILE LYS GLY ALA ILE THR VAL SEQRES 7 A 194 LEU PRO VAL VAL GLN ALA THR ALA THR SER ILE LEU VAL SEQRES 8 A 194 PRO ASP ASN GLN PRO GLN LEU ALA PHE ASN SER TRP GLU SEQRES 9 A 194 ALA ALA ALA CYS ALA ALA ASP THR LEU GLU SER GLN GLN SEQRES 10 A 194 THR PRO PHE LEU MSE VAL THR GLY ALA VAL GLU SER GLY SEQRES 11 A 194 ASN LEU SER PRO ASN LEU LEU ALA VAL GLN LYS GLN LEU SEQRES 12 A 194 LEU VAL ALA LYS PRO ALA GLY ILE GLY LEU ALA ALA ASN SEQRES 13 A 194 SER ASP ARG ALA LEU LYS VAL VAL THR LEU GLU GLN LEU SEQRES 14 A 194 ARG GLN VAL VAL GLY ASP LYS PRO TRP ARG LYS PRO MSE SEQRES 15 A 194 VAL THR PHE SER SER GLY LYS ASN VAL ALA GLN ALA MODRES 3P06 MSE A 652 MET SELENOMETHIONINE MODRES 3P06 MSE A 664 MET SELENOMETHIONINE MODRES 3P06 MSE A 697 MET SELENOMETHIONINE MODRES 3P06 MSE A 758 MET SELENOMETHIONINE MODRES 3P06 MSE A 818 MET SELENOMETHIONINE HET MSE A 652 8 HET MSE A 664 8 HET MSE A 697 8 HET MSE A 758 8 HET MSE A 818 8 HET SO4 A 100 5 HET GOL A 101 6 HET GOL A 102 6 HET GOL A 103 6 HET BME A 104 4 HET URE A 105 4 HET CL A 106 1 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM BME BETA-MERCAPTOETHANOL HETNAM URE UREA HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 SO4 O4 S 2- FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 BME C2 H6 O S FORMUL 7 URE C H4 N2 O FORMUL 8 CL CL 1- FORMUL 9 HOH *47(H2 O) HELIX 1 1 LEU A 670 ILE A 674 5 5 HELIX 2 2 ASN A 699 GLU A 704 1 6 HELIX 3 3 TRP A 739 THR A 748 1 10 HELIX 4 4 LEU A 773 VAL A 781 1 9 HELIX 5 5 VAL A 781 GLY A 786 1 6 HELIX 6 6 THR A 801 GLY A 810 1 10 SHEET 1 A 4 GLY A 638 SER A 642 0 SHEET 2 A 4 SER A 724 PRO A 728 -1 O VAL A 727 N VAL A 639 SHEET 3 A 4 GLN A 719 ALA A 720 -1 N GLN A 719 O LEU A 726 SHEET 4 A 4 VAL A 819 THR A 820 -1 O VAL A 819 N ALA A 720 SHEET 1 B 7 ARG A 681 GLN A 684 0 SHEET 2 B 7 THR A 690 LEU A 694 -1 O ILE A 691 N ALA A 683 SHEET 3 B 7 ALA A 711 VAL A 717 1 O ILE A 712 N TYR A 692 SHEET 4 B 7 ARG A 657 LYS A 667 -1 N VAL A 666 O THR A 713 SHEET 5 B 7 GLY A 645 SER A 654 -1 N LEU A 648 O PHE A 663 SHEET 6 B 7 ALA A 828 GLN A 829 -1 O GLN A 829 N LEU A 651 SHEET 7 B 7 LEU A 734 ALA A 735 1 N ALA A 735 O ALA A 828 SHEET 1 C 3 MSE A 758 VAL A 759 0 SHEET 2 C 3 LEU A 789 ALA A 791 1 O ALA A 790 N MSE A 758 SHEET 3 C 3 LEU A 797 LYS A 798 1 O LEU A 797 N LEU A 789 SHEET 1 D 2 VAL A 763 GLU A 764 0 SHEET 2 D 2 ASN A 767 LEU A 768 -1 O ASN A 767 N GLU A 764 LINK C LEU A 651 N MSE A 652 1555 1555 1.34 LINK C MSE A 652 N ASP A 653 1555 1555 1.33 LINK C PHE A 663 N MSE A 664 1555 1555 1.31 LINK C MSE A 664 N ALA A 665 1555 1555 1.32 LINK C GLU A 696 N MSE A 697 1555 1555 1.33 LINK C MSE A 697 N VAL A 698 1555 1555 1.32 LINK C LEU A 757 N MSE A 758 1555 1555 1.32 LINK C MSE A 758 N VAL A 759 1555 1555 1.32 LINK C PRO A 817 N MSE A 818 1555 1555 1.32 LINK C MSE A 818 N VAL A 819 1555 1555 1.34 LINK OG SER A 738 C ALA A 830 1555 1555 1.34 SITE 1 AC1 8 SER A 738 THR A 760 GLY A 761 ASN A 771 SITE 2 AC1 8 LEU A 772 LEU A 773 ALA A 774 LYS A 777 SITE 1 AC2 4 HOH A 7 HOH A 12 LYS A 783 GLY A 786 SITE 1 AC3 2 ASN A 637 HIS A 673 SITE 1 AC4 8 GLY A 660 GLY A 661 LEU A 780 VAL A 781 SITE 2 AC4 8 ALA A 785 THR A 820 PHE A 821 SER A 822 SITE 1 AC5 8 GLY A 661 ALA A 662 PRO A 716 VAL A 717 SITE 2 AC5 8 PRO A 732 SER A 822 SER A 823 GLY A 824 SITE 1 AC6 5 HOH A 15 GLN A 753 VAL A 809 GLY A 810 SITE 2 AC6 5 LYS A 812 SITE 1 AC7 1 LYS A 798 CRYST1 59.140 59.140 208.142 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016909 0.009762 0.000000 0.00000 SCALE2 0.000000 0.019525 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004804 0.00000